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Module 4: MouseMine at MGI
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Introduction to MouseMine
Online computational platform to access MGI data
flexible queries from templates or fully customizable
queries
iterative refinement
point-and-click visual interface
list analysis tools, including enrichment statistics
integrated and compatible with other InterMOD
platforms (cross-species analysis)
downloadable reports, saving to online accounts or
forwarding to Galaxy
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Locating MouseMine
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Performing a template query
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Search for all GO terms
associated with Mmp9
mmp9
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Search results table
sort
removevisibility
column statistics
√
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Search results table
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Search results table
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Iterative result
Filtered to only those GO
associations with “IDA /
Inferred by direct assay”
as the evidence code
Added a column for
positional coordinates
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Working with lists
MGI:87853 MGI:1352629 MGI:87874 …
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Confirm list matches
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List tools 1: view and manipulate
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List tools 2: enrichment analysis
widgets
Human disease
(MEDIC) AnatomyMammalian
phenotype
Gene Ontology
(GO)Chromosome
distribution
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List tools 3: template quick links
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Summary
MouseMine allows straightforward, flexible batch-scale querying of MGI data
Multiple useful list analysis tools
contact [email protected] with any questions