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Leukemia diagnostics with �ow
cytometry
G. Ciuperca1, M. Mafouz1, C. Dumontet2, V.Louvet1, A. Plesa2
1Institut Camille JordanUniversité Lyon 1
2Laboratoire d'Hématologie cellulaireHôpital Edouard Herriot
Mathematical Methods and Models in Biology andMedicine, Bedlewo, 2005
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Plan de l'exposé
Hematopoiesis and leukemias
Flow cytometry
Leukemias classi�cation and Medical diagnosis
Mathematical Models for diagnosis and classi�cationof acute myeloid leukemia
![Page 3: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/3.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Hematopoiesis and leukemiasDescriptionAntigen expressionCluster of Di�erentiation
Flow cytometry
Leukemias classi�cation and Medical diagnosis
Mathematical Models for diagnosis and classi�cationof acute myeloid leukemia
![Page 4: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/4.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Hematopoiesis and leukemias
I Hematopoiesis : development of blood cells,which occurs in marrow and lymphatic tissues.
Immature cells (called blasts) ☞functional maturecells
I Acute Leukemias : clonal disorder of maturationat an early phase of hematopoieticdi�erentiation.
Acute lymphoblastic leukemia, ALL : lymphoid cellsAcute myelogenous leukemia, AML : myeloid cells
![Page 5: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/5.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Hematopoiesis and leukemias
I Hematopoiesis : development of blood cells,which occurs in marrow and lymphatic tissues.
Immature cells (called blasts) ☞functional maturecells
I Acute Leukemias : clonal disorder of maturationat an early phase of hematopoieticdi�erentiation.
Acute lymphoblastic leukemia, ALL : lymphoid cellsAcute myelogenous leukemia, AML : myeloid cells
![Page 6: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/6.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Hematopoiesis and leukemias
I Hematopoiesis : development of blood cells,which occurs in marrow and lymphatic tissues.
Immature cells (called blasts) ☞functional maturecells
I Acute Leukemias : clonal disorder of maturationat an early phase of hematopoieticdi�erentiation.
Acute lymphoblastic leukemia, ALL : lymphoid cellsAcute myelogenous leukemia, AML : myeloid cells
![Page 7: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/7.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Hematopoiesis and leukemias
I Hematopoiesis : development of blood cells,which occurs in marrow and lymphatic tissues.
Immature cells (called blasts) ☞functional maturecells
I Acute Leukemias : clonal disorder of maturationat an early phase of hematopoieticdi�erentiation.
Acute lymphoblastic leukemia, ALL : lymphoid cells
Acute myelogenous leukemia, AML : myeloid cells
![Page 8: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/8.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Hematopoiesis and leukemias
I Hematopoiesis : development of blood cells,which occurs in marrow and lymphatic tissues.
Immature cells (called blasts) ☞functional maturecells
I Acute Leukemias : clonal disorder of maturationat an early phase of hematopoieticdi�erentiation.
Acute lymphoblastic leukemia, ALL : lymphoid cellsAcute myelogenous leukemia, AML : myeloid cells
![Page 9: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/9.jpg)
Stages of Hematopoiesis
![Page 10: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/10.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Normal and leukemic marrow
Normal marrow Leukemic cells
![Page 11: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/11.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Antigen expression
I During the process ofdi�erentiation andmaturation, some genesare turned on whileothers are disabled
I The use of multiplecellular markerssimultaneously allows todistinguish one type ofcell as distinctlydi�erent from another
Antigen-antibody reaction
![Page 12: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/12.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Cluster of Di�erentiation
Cluster of Di�erentiation (CD) molecules are markerson the cell surface, as recognized by speci�c sets ofantibodies, used to identify the cell type, stage ofdi�erentiation and activity state of a cell
☞groups of antigens
![Page 13: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/13.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Hematopoiesis and leukemias
Flow cytometryPrincipleFlow cytometerFlow cytometer datas
Leukemias classi�cation and Medical diagnosis
Mathematical Models for diagnosis and classi�cationof acute myeloid leukemia
![Page 14: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/14.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Principle
Flow cytometry is a technique for analyzing largepopulations of single cells.
1. Cells are labeled with a �uorescent dye which iscoupled to a monoclonal antibody and binds tothose cells coated with the antigen for which theantibody is speci�c.
2. Cells travel in suspension one by one and a laserbeam is directed at the stream.
3. As each labeled cell passes through the beam, itsresulting �uorescence and angle di�usion isdetected by a photocell.
☞Flow cytometers can be considered to bespecialised �uorescence microscopes.
![Page 15: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/15.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Principle
Flow cytometry is a technique for analyzing largepopulations of single cells.
1. Cells are labeled with a �uorescent dye which iscoupled to a monoclonal antibody and binds tothose cells coated with the antigen for which theantibody is speci�c.
2. Cells travel in suspension one by one and a laserbeam is directed at the stream.
3. As each labeled cell passes through the beam, itsresulting �uorescence and angle di�usion isdetected by a photocell.
☞Flow cytometers can be considered to bespecialised �uorescence microscopes.
![Page 16: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/16.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Principle
Flow cytometry is a technique for analyzing largepopulations of single cells.
1. Cells are labeled with a �uorescent dye which iscoupled to a monoclonal antibody and binds tothose cells coated with the antigen for which theantibody is speci�c.
2. Cells travel in suspension one by one and a laserbeam is directed at the stream.
3. As each labeled cell passes through the beam, itsresulting �uorescence and angle di�usion isdetected by a photocell.
☞Flow cytometers can be considered to bespecialised �uorescence microscopes.
![Page 17: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/17.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Principle
Flow cytometry is a technique for analyzing largepopulations of single cells.
1. Cells are labeled with a �uorescent dye which iscoupled to a monoclonal antibody and binds tothose cells coated with the antigen for which theantibody is speci�c.
2. Cells travel in suspension one by one and a laserbeam is directed at the stream.
3. As each labeled cell passes through the beam, itsresulting �uorescence and angle di�usion isdetected by a photocell.
☞Flow cytometers can be considered to bespecialised �uorescence microscopes.
![Page 18: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/18.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Principle
Flow cytometry is a technique for analyzing largepopulations of single cells.
1. Cells are labeled with a �uorescent dye which iscoupled to a monoclonal antibody and binds tothose cells coated with the antigen for which theantibody is speci�c.
2. Cells travel in suspension one by one and a laserbeam is directed at the stream.
3. As each labeled cell passes through the beam, itsresulting �uorescence and angle di�usion isdetected by a photocell.
☞Flow cytometers can be considered to bespecialised �uorescence microscopes.
![Page 19: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/19.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Flow cytometer
![Page 20: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/20.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Flow cytometer datas
Each particle is characterized by di�erent variables
I FCS : Forward Angle Light Scatter related to thecell size
I SSC : Side Scatter related to the cell granularityand complexity
I FL1, FL2, FL3, FL4 : �uorescence
☞For each biological sample, �ow cytometer producea �le (FCS normalized format) which contain 6
variables per particle.
![Page 21: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/21.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Flow cytometer datas
Each particle is characterized by di�erent variables
I FCS : Forward Angle Light Scatter related to thecell size
I SSC : Side Scatter related to the cell granularityand complexity
I FL1, FL2, FL3, FL4 : �uorescence
☞For each biological sample, �ow cytometer producea �le (FCS normalized format) which contain 6
variables per particle.
![Page 22: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/22.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Flow cytometer datas
Each particle is characterized by di�erent variables
I FCS : Forward Angle Light Scatter related to thecell size
I SSC : Side Scatter related to the cell granularityand complexity
I FL1, FL2, FL3, FL4 : �uorescence
☞For each biological sample, �ow cytometer producea �le (FCS normalized format) which contain 6
variables per particle.
![Page 23: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/23.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Flow cytometer datas
Each particle is characterized by di�erent variables
I FCS : Forward Angle Light Scatter related to thecell size
I SSC : Side Scatter related to the cell granularityand complexity
I FL1, FL2, FL3, FL4 : �uorescence
☞For each biological sample, �ow cytometer producea �le (FCS normalized format) which contain 6
variables per particle.
![Page 24: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/24.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Hematopoiesis and leukemias
Flow cytometry
Leukemias classi�cation and Medical diagnosisLeukemias classi�cationMedical diagnosis
Mathematical Models for diagnosis and classi�cationof acute myeloid leukemia
![Page 25: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/25.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Leukemias classi�cation
Accurate classi�cation of AML at diagnostic iscritically important to the management of patient :
I Classi�cation of the malignant cell with regard tolineage imperative for the implementation oftherapy
I speci�c subclassi�cation important to understandthe prognosis of the patient, selection of morespeci�c therapeuthic approaches ...
☞ FAB classi�cation (French American British) :correlation with morphologic classi�cation
☞ WHO classi�cation : the main di�erence with theFAB classi�cation is that this new classi�cationtake into account cytogenetic abnormalitites
![Page 26: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/26.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Leukemias classi�cation
Accurate classi�cation of AML at diagnostic iscritically important to the management of patient :
I Classi�cation of the malignant cell with regard tolineage imperative for the implementation oftherapy
I speci�c subclassi�cation important to understandthe prognosis of the patient, selection of morespeci�c therapeuthic approaches ...
☞ FAB classi�cation (French American British) :correlation with morphologic classi�cation
☞ WHO classi�cation : the main di�erence with theFAB classi�cation is that this new classi�cationtake into account cytogenetic abnormalitites
![Page 27: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/27.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Leukemias classi�cation
Accurate classi�cation of AML at diagnostic iscritically important to the management of patient :
I Classi�cation of the malignant cell with regard tolineage imperative for the implementation oftherapy
I speci�c subclassi�cation important to understandthe prognosis of the patient, selection of morespeci�c therapeuthic approaches ...
☞ FAB classi�cation (French American British) :correlation with morphologic classi�cation
☞ WHO classi�cation : the main di�erence with theFAB classi�cation is that this new classi�cationtake into account cytogenetic abnormalitites
![Page 28: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/28.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Leukemias classi�cation
Accurate classi�cation of AML at diagnostic iscritically important to the management of patient :
I Classi�cation of the malignant cell with regard tolineage imperative for the implementation oftherapy
I speci�c subclassi�cation important to understandthe prognosis of the patient, selection of morespeci�c therapeuthic approaches ...
☞ FAB classi�cation (French American British) :correlation with morphologic classi�cation
☞ WHO classi�cation : the main di�erence with theFAB classi�cation is that this new classi�cationtake into account cytogenetic abnormalitites
![Page 29: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/29.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Leukemias classi�cation
Accurate classi�cation of AML at diagnostic iscritically important to the management of patient :
I Classi�cation of the malignant cell with regard tolineage imperative for the implementation oftherapy
I speci�c subclassi�cation important to understandthe prognosis of the patient, selection of morespeci�c therapeuthic approaches ...
☞ FAB classi�cation (French American British) :correlation with morphologic classi�cation
☞ WHO classi�cation : the main di�erence with theFAB classi�cation is that this new classi�cationtake into account cytogenetic abnormalitites
![Page 30: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/30.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
FAB AML classi�cation
![Page 31: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/31.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
FAB AML classi�cation
![Page 32: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/32.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Medical diagnosis
Di�erents analysis on biological sample of peripheralblood or marrow to obtain a valid diagnosis :
I Morphologic
I Cytochemic
I Flow cytometry
I Cytogenetic
For Flow cytometry, the diagnostician has to analyzemultiple bivariate dot plots from the cytometer.
![Page 33: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/33.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Medical diagnosis
Di�erents analysis on biological sample of peripheralblood or marrow to obtain a valid diagnosis :
I Morphologic
I Cytochemic
I Flow cytometry
I Cytogenetic
For Flow cytometry, the diagnostician has to analyzemultiple bivariate dot plots from the cytometer.
![Page 34: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/34.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Medical diagnosis
Di�erents analysis on biological sample of peripheralblood or marrow to obtain a valid diagnosis :
I Morphologic
I Cytochemic
I Flow cytometry
I Cytogenetic
For Flow cytometry, the diagnostician has to analyzemultiple bivariate dot plots from the cytometer.
![Page 35: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/35.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Manual analysis of cytometrical datas :
control sample
Used of CD45 which characterize the maturation ofcells to evaluate the particular auto�uorescence of thesample
![Page 36: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/36.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Manual analysis of cytometrical datas :
antigens expression
![Page 37: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/37.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Hematopoiesis and leukemias
Flow cytometry
Leukemias classi�cation and Medical diagnosis
Mathematical Models for diagnosis and classi�cationof acute myeloid leukemia
![Page 38: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/38.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Goals of this work
1. Diagnosis help and statistical approach
I Find a methodology to help the clinician to
analyze the cytometer datas more systematicalyI Build a data base on an important number of
casesI Use this datas to understand quantitatively the
relations between themselves
2. Subpopulations of cells discrimination
I Try to �nd more precisely sub-population of
blasts at di�erent stage of maturation : to take
into account quantitative antigen expression.I COmparison between this result and the exiting
and emergent classi�cations.
![Page 39: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/39.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Goals of this work
1. Diagnosis help and statistical approach
I Find a methodology to help the clinician to
analyze the cytometer datas more systematicalyI Build a data base on an important number of
casesI Use this datas to understand quantitatively the
relations between themselves
2. Subpopulations of cells discrimination
I Try to �nd more precisely sub-population of
blasts at di�erent stage of maturation : to take
into account quantitative antigen expression.I COmparison between this result and the exiting
and emergent classi�cations.
![Page 40: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/40.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Goals of this work
1. Diagnosis help and statistical approach
I Find a methodology to help the clinician to
analyze the cytometer datas more systematicaly
I Build a data base on an important number of
casesI Use this datas to understand quantitatively the
relations between themselves
2. Subpopulations of cells discrimination
I Try to �nd more precisely sub-population of
blasts at di�erent stage of maturation : to take
into account quantitative antigen expression.I COmparison between this result and the exiting
and emergent classi�cations.
![Page 41: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/41.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Goals of this work
1. Diagnosis help and statistical approach
I Find a methodology to help the clinician to
analyze the cytometer datas more systematicalyI Build a data base on an important number of
cases
I Use this datas to understand quantitatively the
relations between themselves
2. Subpopulations of cells discrimination
I Try to �nd more precisely sub-population of
blasts at di�erent stage of maturation : to take
into account quantitative antigen expression.I COmparison between this result and the exiting
and emergent classi�cations.
![Page 42: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/42.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Goals of this work
1. Diagnosis help and statistical approach
I Find a methodology to help the clinician to
analyze the cytometer datas more systematicalyI Build a data base on an important number of
casesI Use this datas to understand quantitatively the
relations between themselves
2. Subpopulations of cells discrimination
I Try to �nd more precisely sub-population of
blasts at di�erent stage of maturation : to take
into account quantitative antigen expression.I COmparison between this result and the exiting
and emergent classi�cations.
![Page 43: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/43.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Goals of this work
1. Diagnosis help and statistical approach
I Find a methodology to help the clinician to
analyze the cytometer datas more systematicalyI Build a data base on an important number of
casesI Use this datas to understand quantitatively the
relations between themselves
2. Subpopulations of cells discrimination
I Try to �nd more precisely sub-population of
blasts at di�erent stage of maturation : to take
into account quantitative antigen expression.I COmparison between this result and the exiting
and emergent classi�cations.
![Page 44: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/44.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Goals of this work
1. Diagnosis help and statistical approach
I Find a methodology to help the clinician to
analyze the cytometer datas more systematicalyI Build a data base on an important number of
casesI Use this datas to understand quantitatively the
relations between themselves
2. Subpopulations of cells discriminationI Try to �nd more precisely sub-population of
blasts at di�erent stage of maturation : to take
into account quantitative antigen expression.
I COmparison between this result and the exiting
and emergent classi�cations.
![Page 45: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/45.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Goals of this work
1. Diagnosis help and statistical approach
I Find a methodology to help the clinician to
analyze the cytometer datas more systematicalyI Build a data base on an important number of
casesI Use this datas to understand quantitatively the
relations between themselves
2. Subpopulations of cells discriminationI Try to �nd more precisely sub-population of
blasts at di�erent stage of maturation : to take
into account quantitative antigen expression.I COmparison between this result and the exiting
and emergent classi�cations.
![Page 46: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/46.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Data treatment
1. Data conversion :
I Conversion of FCS to ASCII format �leI Conversion of �uorescence data in logarithm
scale
2. Determination of blasts sub-population and cellsauto�uorescence
I auto�uorescence with control �leI blasts sup-population for all �les
3. Determination of all CD positive rate for theblasts sub-population
![Page 47: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/47.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Data treatment
1. Data conversion :I Conversion of FCS to ASCII format �leI Conversion of �uorescence data in logarithm
scale
2. Determination of blasts sub-population and cellsauto�uorescence
I auto�uorescence with control �leI blasts sup-population for all �les
3. Determination of all CD positive rate for theblasts sub-population
![Page 48: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/48.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Data treatment
1. Data conversion :I Conversion of FCS to ASCII format �leI Conversion of �uorescence data in logarithm
scale
2. Determination of blasts sub-population and cellsauto�uorescence
I auto�uorescence with control �leI blasts sup-population for all �les
3. Determination of all CD positive rate for theblasts sub-population
![Page 49: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/49.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Data treatment
1. Data conversion :I Conversion of FCS to ASCII format �leI Conversion of �uorescence data in logarithm
scale
2. Determination of blasts sub-population and cellsauto�uorescence
I auto�uorescence with control �leI blasts sup-population for all �les
3. Determination of all CD positive rate for theblasts sub-population
![Page 50: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/50.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Statistical analysis
1. Principal Component Analysis
I show that the variables are not correlatedI allow the detection of singular data
2. Ascendant Hierarchical Classi�cation
I try to group patient in terms of similarityI First results give a encouraging dendrogramm
where we can detect some groups form the FAB
classi�cation
![Page 51: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/51.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Statistical analysis
1. Principal Component AnalysisI show that the variables are not correlatedI allow the detection of singular data
2. Ascendant Hierarchical Classi�cation
I try to group patient in terms of similarityI First results give a encouraging dendrogramm
where we can detect some groups form the FAB
classi�cation
![Page 52: Leukemia diagnostics with flow cytometry - Claude …math.univ-lyon1.fr/~louvet/documents/leucemies_bedle… · · 2012-10-04Leukemia diagnostics with ow cytometry G. Ciuperca,](https://reader031.vdocuments.site/reader031/viewer/2022030504/5ab11c647f8b9aea528bfb48/html5/thumbnails/52.jpg)
Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Statistical analysis
1. Principal Component Analysis
I show that the variables are not correlatedI allow the detection of singular data
2. Ascendant Hierarchical Classi�cationI try to group patient in terms of similarityI First results give a encouraging dendrogramm
where we can detect some groups form the FAB
classi�cation
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Leukemia diagnosticswith �ow cytometry
G. Ciuperca, M.Mafouz, C.
Dumontet, V. Louvet,A. Plesa
Hematopoiesis andleukemiasDescriptionAntigen expressionCluster ofDi�erentiationFlow cytometryPrincipleFlow cytometerFlow cytometer datasLeukemiasclassi�cation andMedical diagnosisLeukemias classi�cationMedical diagnosisMathematical Modelsfor diagnosis andclassi�cation of acutemyeloid leukemia
Statistical analysis : AHC result