![Page 1: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/1.jpg)
1
Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an
acidic carboxyl group Joined as amides between the NH2 of one amino
acid and the CO2H to the next amino acid Chains with fewer than 50 units are called peptides Protein: large chains that have structural or catalytic
functions in biology
![Page 2: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/2.jpg)
2
26.1 Structures of Amino Acids
In neutral solution, the COOH is ionized and the NH2 is protonated
The resulting structures have “+” and “-” charges (a dipolar ion, or zwitterion)
They are like ionic salts in solution
![Page 3: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/3.jpg)
3
![Page 4: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/4.jpg)
4
![Page 5: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/5.jpg)
5
![Page 6: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/6.jpg)
6
Abbreviations and Codes
Alanine A, Ala
Arginine R, Arg
Asparagine N, Asn
Aspartic acid D, Asp
Cysteine C, Cys
Glutamine Q, Gln
Glutamic Acid E, Glu
Glycine G, Gly
Histidine H, His
Isoleucine I, Ile
Leucine L, Leu
Lysine K, Lys
Methionine M, Met
Phenylalanine F, Phe
Proline P, Pro
Serine S, Ser
Threonine T, Thr
Tryptophan W, Trp
Tyrosine Y, Tyr
Valine V, Val
![Page 7: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/7.jpg)
7
Chirality of Amino Acids
Glycine, 2-amino-acetic acid, is achiral In all the others, the carbons of the amino acids are
centers of chirality The stereochemical reference for amino acids is the
Fischer projection of L-serine Proteins are derived exclusively from L-amino acids
![Page 8: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/8.jpg)
8
Histidine
Contains an imidazole ring that is partially protonated in neutral solution
Only the pyridine-like, doubly bonded nitrogen in histidine is basic. The pyrrole-like singly bonded nitrogen is nonbasic because its lone pair of electrons is part of the 6 electron aromatic imidazole ring.
![Page 9: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/9.jpg)
9
26.2 Amino Acids, the Henderson Hasselbalch Equation, and Isoelectric Points In acidic solution, the carboxylate and amine are in
their conjugate acid forms, an overall cation In basic solution, the groups are in their base forms,
an overall anion In neutral solution cation and anion forms are present This pH where the overall charge is 0 is the
isoelectric point, pI
![Page 10: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/10.jpg)
10
Titration Curve on an Amino Acid
50%
50%50%
50%
![Page 11: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/11.jpg)
11
Enantioselective Synthesis of Amino Acids Amino acids (except glycine) are chiral and pure
enantiomers are required for any protein or peptide synthesis
Resolution of racemic mixtures is inherently inefficient since at least half the material is discarded
An efficient alternative is enantioselective synthesis Chiral metal catalysts are popular tools More recently using enzymes to do non-natural
reactions is popular.
![Page 12: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/12.jpg)
12
William Knowles won Noble Prize in 2001 (Monsanto Company)(FYI-one of the few non-academic scientists to ever win the award)
![Page 13: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/13.jpg)
13
Amide bond is Planar
![Page 14: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/14.jpg)
14
Disulfide Linkages
(Peptidal hormone)
![Page 15: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/15.jpg)
15
-Helix
-helix stabilized by H-bonds between amide N–H groups and C=O groups four residues away -helical segments in their chains
![Page 16: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/16.jpg)
16
-Pleated Sheet b-pleated sheet secondary structure is exhibited by
polypeptide chains lined up in a parallel arrangement, and held together by hydrogen bonds between chains
![Page 17: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/17.jpg)
17
Denaturation of Proteins The tertiary structure of a globular protein is the result of many
intramolecular attractions that can be disrupted by a change of the environment, causing the protein to become denatured
Solubility is drastically decreased as in heating egg white, where the albumins unfold and coagulate
Enzymes also lose all catalytic activity when denatured
![Page 18: 1 Proteins – Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl group Joined as amides between the NH 2 of one amino](https://reader035.vdocuments.site/reader035/viewer/2022062519/56649efd5503460f94c11e82/html5/thumbnails/18.jpg)
18
Enzyme Catalysis