development of microsatellite markers for puccinia psidii, a rust fungus threatening ohia...
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Development of microsatellite markers for Puccinia psidii, a rust fungus threatening ohia
(Metrosideros polymorpha) and other Myrtaceae in Hawaii
Shaobin Zhong and Baojun Yang
Department of Plant & Environmental Protection SciencesUniversity of Hawaii at Manoa
Honolulu, Hawaii
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Life cycle and host range of Puccinia psidii
Host range: 20 genera and 71 species from Myrtaceae: Eucalypteae, Leptospermeae, Melaleuceae, Metrosidereae, Myrteae, Syncarpieae and Syzygieae (Glen et al. 2007)
(Glen M et al. 2007. Australasian Plant Pathology 36: 1–16)
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origin
1977
2005
Origin and Distribution of Puccinia psidii
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2005
Puccinia psidii in Hawaii
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Rhodomyrtus tormentosaMetrosidero polymorpha
Eugenia koolauensis Melaleuca quinquenervia
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Ohia is often one of the first plants to colonize new lava flows and is the major component in Hawaiian forest
Photo by C. Elevitch
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The native Hawaiian honeycreeper ‘apapane on an ‘Ohi‘a lehua
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Questions to be answered:
How many races (or strains) have been introduced into Hawaii?
Where were these races from?
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SSR-enriched DNA library
DNA sequencing
Primer design
Evaluation of SSR markers
Population genetics
216 clones
80 primer pairs
15 SSRs
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1 2 4 5 6 7 8 10 12 13 14 15 16 17 19 20 22 23 24 C
HI Florida HI HIBrazil
PsSSR12
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1 2 4 5 6 7 8 10 12 13 14 1516 17 19 20 22 23 24 C
HI Florida HI HIBrazil
PsSSR195
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1 2 4 5 6 7 8 10 12 13 14 1516 17 19 20 22 23 24 C
HI Florida HI HIBrazil
PsSSR208
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100
85
100
100
93
Dendrogram based on 71 alleles from 15 SSR loci
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Summary:
Fifteen microsatellite markers were developed
Seventy one alleles were identified among 19 isolates analyzed
Three genotypes found in four isolates from Florida and two genotypes detected in four Brazil isolates
Only one genotype was found in 12 Hawaiian isolates
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Acknowledgements:
Acelino Alfenas (Federal University of Viosa, Brazil)
Robert Hauff (Hawaii Department of Agriculture, Hawaii)
Eloise Killgore (Hawaii Department of Agriculture, Hawaii)
Min Rayachhetry (US Forest Service, Florida)
Les Szabo (CDL-USDA, Minnesota)
Janice Uchida (University of Hawaii, Hawaii)