cytogenetics 2003-2007
TRANSCRIPT
CYTOGENETICS
CYTOGENETICS Study of chromosomes and related
diseases caused by abnormality in its structure and number
Study of concepts related to the study of heredity, genetic phenomenon, sex determination and disorders in relation to human inheritance.
HUMAN G E N E
Segment of DNA that codes for a polypeptide.
CHROMOSOMES – the three-dimensional structure within the nucleus of the cell made up of a continuous molecule of DNA and proteins wrapped around it.
CHROMATIN – composed mainly of coiled strands of DNA and its associated histone protein . They represent chromosomes in different degrees of uncoiling
COMPONENTS OF CHROMATIN
1. DNA2. Histones3. DNA binding proteins4. RNA
TYPES OF CHROMATIN
HETEROCHROMATIN EUCHROMATIN1. Transcriptionally
inactive2. Highly condensed form
3. Located near centromeres & telomeres
4. Makes up 10% of the chromatin present in an interphase cell
5. DNA replicated late in S phase
1. Transcriptionally active
2. Less condensed ,loosely packed
3. Located near the nuclear pore complex
4. Comprises 90% of chromatin in a interphase cell
5. DNA replicated early in S phase
HUMAN DNA CONTAINS TWO COPIES OF EVERY DNA SEQUENCE; IS ORGANIZED INTO CHROMOSOMES W/C SERVE TO MANEUVER DNA THROUGH CELL DIVISION
ESSENTIAL PARTS OF A CHROMOSOMES
1. TELOMERES – Chromosome tips containing many repeats of the sequence TTAGGG.
2. CENTROMERES- largest constriction of a chromosome ; the site where spindle fibers attach.
3. ORIGIN OF REPLICATION SITES – where replicaton fork begin to form
HOW IS DNA CONDENSED INTO A CHROMOSOMES ?
By wrapping around histone proteins and forms compressed loops of DNA
CLASSIFICATION OF CHROMOSOMES
1. TELOCENTRIC - has the centromere at one end
2. ACROCENTRIC - has the centromere near an end of chromosomes
3. SUBMETACENTRIC – centromere creates a long q arm and a short p arm
4. METACENTRIC – centromere establishes equal sized p and q arms.
TYPES OF CHROMOSOMES
A. METACENTRIC B. SUBMETACENTRICC. ACROCENTRICD. TELOCENTRIC
KARYOTYPE
Standard chart of chromosomesisolated from a cell at metaphase arranged in order by size and structure or physical landmark
SPECIMENS USED FOR OBTAINING CHROMOSOMES PREPARATION :
1. Peripheral blood 2. Bone Marrow3. Cultured skin fibroblasts4.Amniotic fluid5. Products of Conception – Chorionic villi
PROTOCOLS FOR KARYOTYPING
1. A sample of blood is drawn and placed in a tube containing heparin as anticoagulant.
2.Through density gradient centrifugation technique, mononuclear cells are isolated are isolated and purified
3. Mononuclear cells are then cultured for 3-4 days in a medium containing phytohemagglutinin.
4. At the end of the culture period, the large population of dividing cells is treated with a drug e.g. Colcemid.
PROTOCOLS FOR KARYOTYPING
5. The lymphocytes are harvested and treated briefly with a hypotonic solution
6.The swollen cells are fixed, dropped onto a microscope slides, dried and stained to induce a banding pattern .
7. Stained slides are scanned to identify good chromosome spread and they are then photographed.
8. Photos showing images of each chromosomes are cut out and pasted to a backing sheet in an orderly manner.
PROTOCOLS FOR KARYOTYPING
CONSTRUCTING A KARYOTYPE
The stained metaphase chromosomes preparations are examined microscopically with 15-20 cells scanned and counted. At least five cells are fully analyzed.
In doing a full analysis each chromosome is critically compared band-for-band with its homolog.
BANDING TECHNIQUES
1. Q BANDING – chromosomes are stained with quinacrine
2. G BANDING – chromosomes are first digested with trypsin then stained with Giemsa
3. C BANDING – chromosomes are treated with acid & base solutions then stained with Giemsa
4. R BANDING – Uses olivomycin or acridine orange
HUMAN MALE & FEMALE CHROMOSOMES
IDEOGRAM
A simple cartoon of a chromosomes, often used in genomics to show the over-all physical structure of a chromosomes
IDEOGRAM
CLASSIFICATION OF CHROMOSOMES FOR KARYOTYPING
GROUP A – Chromosomes 1-3 , largest, metacentric chromosomes
GROUP B – Chromosomes 4-5, large with submedian centromeres
GROUP C –chromosomes 6-12, medium sized with sub-median centromere
GROUP D – Chromosomes 13-15, medium sized with acrocentric centromere
GROUP E – Chromosomes 16-18, short with median or submedian centromere
GROUP F – chromosomes 19-20, short with median centromere
GROUP G- chromosomes 21-22, very short with acrocentric centromere
CHROMOSOME X similar to Group CCHROMOSOME Y similar to Group G
CLASSIFICATION OF CHROMOSOMES FOR KARYOTYPING