cvrg presenter disclosure information joel saltz md, phd director comprehensive informatics center...
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CVRGCVRG
Presenter Disclosure InformationPresenter Disclosure Information
Joel Saltz MD, PhDJoel Saltz MD, PhDDirector Comprehensive Informatics CenterDirector Comprehensive Informatics CenterEmory UniversityEmory University
Translational Research Informatics and CVRGTranslational Research Informatics and CVRG
FINANCIAL DISCLOSURE:FINANCIAL DISCLOSURE:NoneNone
UNLABELED/UNAPPROVED USES DISCLOSURE:UNLABELED/UNAPPROVED USES DISCLOSURE:NoneNone
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Translational Research Informatics Gender Ethnicity Age Weight Diagnosis Medical History
Literature Databases Terminologies Ontologies Lab Tests
Genes Proteins
Biological Models Technologies Algorithms
Integration, Management, Analysis, and Dissemination
Integration, Management, Analysis, and Dissemination
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Translational Research Continuum
SNPIdentification
SNPIdentification
ClinicalData
Correlation
ClinicalData
Correlation
ExpressionAnalysis
ExpressionAnalysis
TissueBankingTissue
Banking
StudyCreation
StudyCreation
PatientEnrollment
PatientEnrollment
ClinicalData
Collection
ClinicalData
Collection
ImageSharing &Analysis
ImageSharing &Analysis
Slide from Ken Buetow
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Transcontinental Railway: The Golden Spike - Triumph of Standards
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Translation: Same ideas, different words
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Biomedical Informatics Services
• Security• Semantic interoperability – common vocabulary and meaning• Data structure interoperability• Interoperability with existing standards for clinical and imaging
systems (e.g. HL-7, DICOM)• Ability to compose services to create application• Ability to efficiently invoke high end computing services• Coordinated query to obtain data from many datasources
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Biomedical Grid Organizations
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Distinguishing Informatics Aspects of CVRG
• Annotation, markup and query of time dependent imagery• Electrophysiology• ECG: grid based data storage, query and analysis• Cardiac research related semantics
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caBIG Organization Structure
Architecture
Vocabulary & Common
Data Elements
General ContractorGeneral Contractor
Strategic Working GroupsStrategic Working Groups
Clinical TrialsIntegrative Cancer Research
Tissue Banks & Pathology Tools
caBIG OversightcaBIG Oversight
Imaging
Open to all, not just funded participants.Open to all, not just funded participants.
190 institutions, 2000 people involved thus far190 institutions, 2000 people involved thus far..
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caBIG Middleware: caGrid
caGrid Components• Advertisement and Discovery• Workflow• Security (GAARDS)• Language (metadata,
ontologies)• Grid Service Graphical
Development Toolkit (Introduce)
• Wrapping executables (gRavi)• Efficient Bulk Data Transport
(IVI middleware)• DICOM compatability (IVI
middleware)
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caGrid Service
caGrid Service
Common Application Services
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caGrid Service
MRI/CT Images
DICOM/AIM Model
CVRG GridInfrastructure
caGrid Service
Taqman Data
JHU SNP Model
caGrid Service
ECG XML
HL7 aECG Model
caGrid Service
Physionet WFDB
WFDB Metadata Model
caGrid Service
OpenClinica Data
OpenClinica Model
caGrid Service
ProteinDB Data
ProteinDB Model
PhysionetAlgorithms
Berger QTAlgorithm
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CVRG Challenge: Temporal Data
• ECG, Cardiac MRI, Multi-slice Cardiac CT, Cardiac PET/CT, Nuclear Perfusion Imaging …
• Analysis and integration of cardiac electrical, mechanical activity, perfusion and hemodynamics
• Temporal query and analysis across patient populations• Integration with clinical and “omic” data