curriculum vitae jan kubíček › upload_path › kindeditor › 201810 › jan... · working...

Curriculum Vitae – Jan Kubíček

Personal Data:

Email: [email protected]

Researchgate: https://www.researchgate.net/profile/Jan_Kubicek4

Linkedin: https://www.linkedin.com/in/jan-kub%C3%AD%C4%8Dek-b969b58a/

Education:

2012 – 2018

VŠB – Technical University of Ostrava, Faculty of Electrical Engineering and

Computer Science VŠB-TUO

Technical Cybernetic

Doctoral studies

2010-2012 VŠB – Technical University of Ostrava, Faculty of Electrical Engineering and


Biomedical Engineering

master's degree - M.Sc.

2008-2010 VŠB – Technical University of Ostrava, Faculty of Electrical Engineering and


Biomedical Technics

Bachelor's degree

Areas of Interest:

Biomedical signal processing

Biomedical image processing

Biological systems modeling

Employment History:

1/2017 – present: VSB-TUO – research assistant

Teaching:

Technical University of Ostrava, Czech Republic

2013 - up to now

2012 - up to now

2014 - up to now

2017 - up to now

Medical Imaging Systems I

MATLAB and Simulations

Biocybernetic

Applied Artificial Inteligence

Supervisor of Graduate work:

Bachelor thesis - 18 defended (5 ongoing)

Master thesis - 1 defended (8 ongoing)

Consultant: 6 bachelor thesis and 14 master thesis

mailto:[email protected]

Projects – main supervisor:

Year Project reference

2015/2016 TACR GAMA, PP1: Pre SEED, (Technology Agency of Czech Republic), Project

TG01010137, Sub-project: Segmentation of image data of articular cartilage and

vascular system to extract pathological findings, CZ: Segmentace obrazových dat

artikulární chrupavky a cévního systému s cílem extrakce patologických nálezů,

VSB-Technical university of Ostrava, Member of working group. 2015-2016 (684

767 CZK, 26 337 €)

Projects – team member:

Year project reference

2015

2014

2013

2012

2011

Biomedical engineers systems XI, Intern grants system, SP2015/179, 2015 Faculty of Elec-

trical Engineering and Computer Science, VSB - TU Ostrava. Applicant and Leader of

working group of VSB - TU Ostrava (1 490 000, CZK, 59 000 €)

Biomedical engineers systems X, Intern grants system, SP2014/194, 2014 Faculty of Elec-

trical Engineering and Computer Science, VSB - TU Ostrava. Applicant and Leader of


Biomedical engineers systems IX, Intern grants system, SP42013/35, 2013, Faculty of Elec-

trical Engineering and Computer Science VSB - TU Ostrava. Applicant and Leader of


Biomedical engineers systems VIII, Intern grants system, SP2012/114, Faculty of Electrical

Engineering and Computer Science, VSB - TU Ostrava. Applicant and Leader of working

group of VSB - TU Ostrava (800 000, CZK, 32 000 €)

Biomedical engineers systems VII, Intern grants system, SP2011/21, Faculty of Electrical

Engineering and Computer Science, VSB - TU Ostrava. Applicant and Leader of working

group of VSB - TU Ostrava (177 000,- CZK, 7 800 €)

Educating Publications:

2014/1

2014/2

KUBÍČEK, J. Zpracování medicínských obrazových dat. Opava: SLEZSKÁ UNIVERZITA

v Opavě, Filozoficko-přírodovědecká fakulta, Ústav fyziky, 2014, 141 s. ISBN 978-80-

7248-941-1.

PENHAKER, M.; KUBÍČEK, J.; SLEZSKÁ UNIVERZITA. Ústav fyziky. Matematické

modelování dat pro vědecké účely. 1. vyd. Opava: Slezská univerzita v Opavě, Filozoficko-

přírodovědecká fakulta, Ústav fyziky, 2014. 327 s. p. ISBN 978-80-7248-942-8.

3

2014/3

PENHAKER, M.; KUBÍČEK, J.; SLEZSKÁ UNIVERZITA. Ústav fyziky. Snímače a sen-

zory v biomedicíně. 1. vyd. Opava: Slezská univerzita v Opavě, Filozoficko-přírodovědecká

fakulta, Ústav fyziky, 2014. 129 s. p. ISBN 978-80-7248-943-5

Indexed Publications Summary:

SCOPUS: 74 documents, h-index: 6

Web of Science: 37 documents, h-index: 4

Indexed Publications - SCOPUS:

2018/74 Kubicek, J., Bryjova, I., Penhaker, M., Oczka, D., Augustynek, M., Cerny, M. Fuzzy seg-

mentation driven by modified ABC algorithm using cartilage features completed by spatial

aggregation: Modeling of early cartilage loss (2018) Lecture Notes in Computer Science

(including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinfor-

matics), 11056 LNAI, pp. 479-488.

2018/73 Kubicek, J., Cerny, M., Penhaker, M., Augustynek, M., Molnarova, K., Kosturikova, J.,

Baleja, L., Oczka, D., Timkovic, J. Modeling and Features Extraction of Blood Vessels

based on Soft Regional Segmentation (2018) IFAC-PapersOnLine, 51 (6), pp. 366-371.

2018/72 Kubicek, J., Bryjova, I., Somek, M., Penhaker, M., Augustynek, M., Cerny, M., Oczka, D.,

Timkovic, J. Optimization of Laser Therapy Parameters in Dependence of Spot Size (2018)

IFAC-PapersOnLine, 51 (6), pp. 360-365.

2018/71 Bryjova, I., Kubicek, J., Kasik, V., Kamensky, D., Klosova, H., Penhaker, M., Cerny, M.

Objective measurement of hypertrophic scars using skin colorimeter (2017) BIODEVICES

2017 - 10th International Conference on Biomedical Electronics and Devices, Proceedings;

Part of 10th International Joint Conference on Biomedical Engineering Systems and Tech-

nologies, BIOSTEC 2017, 2017-January, pp. 126-133.

2018/70 Kubicek, J., Bryjova, I., Penhaker, M., Kasik, V., Labza, Z., Cerny, M., Augustynek, M.

Modeling of blood perfusion in dependence of scanning angle from LDPI data (2017)

BIODEVICES 2017 - 10th International Conference on Biomedical Electronics and Devic-

es, Proceedings; Part of 10th International Joint Conference on Biomedical Engineering

Systems and Technologies, BIOSTEC 2017, 2017-January, pp. 110-117.

2018/69 Penhaker, M., Polomik, J., Kubicek, J., Kasik, V. Biopotential conducting polymer elec-

trodes design and realization for ECG measurement (2017) BIODEVICES 2017 - 10th In-

ternational Conference on Biomedical Electronics and Devices, Proceedings; Part of 10th

International Joint Conference on Biomedical Engineering Systems and Technologies,

BIOSTEC 2017, 2017-January, pp. 134-141.

2018/68 Kubicek, J., Penhaker, M., Cerny, M., Augustynek, M., Korhelik, K., Vodakova, A., Oczka,

D. Analysis and modeling of secondary X-ray effect on structure of skiagraphy images

(2018) BIODEVICES 2018 - 11th International Conference on Biomedical Electronics and

Devices, Proceedings; Part of 11th International Joint Conference on Biomedical Engineer-

ing Systems and Technologies, BIOSTEC 2018, 1, pp. 30-38.

2018/67 Kubicek, J., Faure-Brac, B., Penhaker, M., Scurek, R., Cerny, M., Augustynek, M., Oczka,

D. Modeling of blood alcohol content using multiregional segmentation from ir images




2018/66 Kasik, V., Kahankova, R., Chvostkova, Z., Kubicek, J., Penhaker, M., Oczka, D. Real-time

analysis of semiconductor memories under the influence of ionizing radiation (2018) SAMI

2018 - IEEE 16th World Symposium on Applied Machine Intelligence and Informatics

Dedicated to the Memory of Pioneer of Robotics Antal (Tony) K. Bejczy, Proceedings,

2018-February, pp. 81-84.

2018/65 Kutalek, F., Pustkova, R., Oczka, D., Penhaker, M., Kubicek, J. Visualization of transient

characteristics of warming with thermal cameras (2018) SAMI 2018 - IEEE 16th World

Symposium on Applied Machine Intelligence and Informatics Dedicated to the Memory of

Pioneer of Robotics Antal (Tony) K. Bejczy, Proceedings, 2018-February, pp. 37-42.

2018/64 Kubicek, J., Bryjova, I., Augustynek, M., Penhaker, M. The light conditions influence upon

blood perfusion in the duplex mode (2018) Journal of Engineering and Applied Sciences, 13

(Specialissue3), pp. 3221-3225.

2018/63 Oczka, D., Penhaker, M., Knybel, L., Kubíček, J. Evaluation application for tracking and

statistical analysis of patient data from hospital real time location system (2019) IFMBE

Proceedings, 68 (3), pp. 805-808.

2018/62 Kubicek, J., Augustynek, M., Penhaker, M., Cerny, M., Oczka, D. Analysis and modeling of

alcohol intoxication from IR images based on multiregional image segmentation and corre-

lation with breath analysis (2018) 2017 IEEE Conference on Big Data and Analytics,

ICBDA 2017, 2018-January, pp. 49-54.

2018/61 Kubicek, J., Augustynek, M., Vodakova, A., Penhaker, M., Cerny, M., Oczka, D.

Segmentation and modeling of scattered RTG irradiation on quality of skiagraphy images in

clinical conditions (2018) 2017 IEEE Conference on Big Data and Analytics, ICBDA 2017,

2018-January, pp. 105-110.

2018/60 Kubicek, J., Timkovic, J., Krestanova, A., Augustynek, M., Penhaker, M., Bryjova, I.

Morphological segmentation of retinal blood vessels and consequent tortuosity extraction

(2018) Journal of Telecommunication, Electronic and Computer Engineering, 10 (1-4), pp.

73-77.

2018/59 Kubicek, J., Penhaker, M., Augustynek, M., Bryjova, I., Valosek, J. Utilization of medical

image soft segmentation based on fuzzy sets classification process modified by local aggre-

gation approach (2018) Journal of Telecommunication, Electronic and Computer Engineer-

ing, 10 (1-8), pp. 109-113.

2018/58 Kubicek, J., Penhaker, M., Augustynek, M., Cerny, M. Mouse tracking algorithm based on

the multiple model kalman filter: Design and implementation of ophthalmological corrector

(2018) Journal of Telecommunication, Electronic and Computer Engineering, 10 (1-8), pp.

5

105-108.

2018/57 Kubicek, J., Penhaker, M., Augustynek, M., Cerny, M., Oczka, D. Multiregional Soft Seg-

mentation Driven by Modified ABC Algorithm and Completed by Spatial Aggregation: Vol-

umetric, Spatial Modelling and Features Extraction of Articular Cartilage Early Loss

(2018) Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial

Intelligence and Lecture Notes in Bioinformatics), 10752 LNAI, pp. 385-394.

2018/56 Kubicek, J., Augustynek, M., Vodakova, A., Penhaker, M. Modelling and Objectification of

Secondary X ray Irradiation on Skiagraphy Images in Clinical Conditions (2018) Lecture

Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and

Lecture Notes in Bioinformatics), 10752 LNAI, pp. 367-375.

2018/55 Kubicek, J., Penhaker, M., Oczka, D., Augustynek, M., Cerny, M., Maresova, P. Analysis

and Modelling of Heel Bone Fracture with Using of Active Contour Driven by Gaussian

Energy and Features Extraction (2018) Lecture Notes in Computer Science (including sub-

series Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 10752

LNAI, pp. 405-414.

2018/54 Kubicek, J., Penhaker, M., Augustynek, M., Cerny, M., Oczka, D., Maresova, P. Detection

and Dynamical Tracking of Temperature Facial Distribution Caused by A cohol Intoxica-

tion with Using of Modified OTSU Regional Segmentation (2018) Lecture Notes in Com-

puter Science (including subseries Lecture Notes in Artificial Intelligence and Lecture

Notes in Bioinformatics), 10752 LNAI, pp. 357-366.

2018/53 Kubicek, J., Michalek, L., Urbanczyk, T., Konecny, J., Tomis, M., Benes, F., Svub, J.,

Stasa, P., Pleva, L. Novel Aproach for Localization of Patients in Urgent Admission De-

partment (2018) Studies in Computational Intelligence, 769, pp. 455-464.

2018/52 Augustýnek, M., Laryš, D., Kubíček, J., Marešová, P., Kuča, K. Use Effectiveness of Medi-

cal Devices: A Case Study on the Deployment of Ultrasonographic Devices (2018) Thera-

peutic Innovation and Regulatory Science, 52 (4), pp. 499-506.

2018/51 Kubicek, J., Augustynek, M., Penhaker, M. Dynamical Modelling of Pulmonary Compart-

ment Response Using Differential Approach (2017) Proceedings - IEEE Symposium on

Computer-Based Medical Systems, 2017-June, art. no. 8104150, pp. 25-29.

2017/50 Kubicek, J., Bryjova, I., Faltynova, K., Penhaker, M., Augustynek, M., Maresova, P.

Evaluation of Gama Analysis Results Significance Within Verification of Radiation IMRT

Plans in Radiotherapy (2017) Lecture Notes in Computer Science (including subseries Lec-

ture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 10449 LNAI, pp.

541-548.

2017/49 Bryjova, I., Kubicek, J., Molnarova, K., Peter, L., Penhaker, M., Kuca, K. Multiregional

Segmentation Modeling in Medical Ultrasonography: Extraction, Modeling and Quantifica-

tion of Skin Layers and Hypertrophic Scars (2017) Lecture Notes in Computer Science (in-

cluding subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformat-

ics), 10449 LNAI, pp. 182-192.

2017/48 Kubicek, J., Penhaker, M., Ondraczka, T., Machacek, Z., Cerny, M., Augustynek, M.,

Maresova, P. Automated extraction and modeling of calcifications and blood stream volu-

metric parameters (2017) Frontiers in Artificial Intelligence and Applications, 297, pp. 256-

269.

2017/47 Kubicek, J., Kosturikova, J., Penhaker, M., Augustynek, M., Kuca, K. Segmentation based

on gabor transformation with machine learning: Modeling of retinal blood vessels system

from retcam images and tortuosity extraction (2017) Frontiers in Artificial Intelligence and

Applications, 297, pp. 270-283.

2017/46 Kubicek, J., Vicianova, V., Penhaker, M., Augustynek, M. Time deformable segmentation

model based on the active contour driven by Gaussian energy distribution: Extraction and

modeling of early articular cartilage pathological interuptions (2017) Frontiers in Artificial

Intelligence and Applications, 297, pp. 242-255.

2017/45 Kubicek, J., Augustynek, M., Penhaker, M., Cerny, M., Bryjova, I. Analysis and dynamical

simulation of heart rate influence upon physical load (2017) Lecture Notes in Computer

Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in

Bioinformatics), 10486 LNCS, pp. 325-333.

2017/44

Kubicek, J., Augustynek, M., Penhaker, M., Bryjova, I., Peter, L. Multiregional fuzzy

thresholding segmentation completed by spatial median aggregation: Modeling and seg-

mentation of early pathological findings of articular cartilage (2018) IFMBE Proceedings,

65, pp. 876-879.

2017/43

Kubicek, J., Bryjova, I., Valosek, J., Penhaker, M., Augustynek, M., Cerny, M., Kasik, V.

Segmentation of vascular calcifications and statistical analysis of calcium score (2017)

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelli-

gence and Lecture Notes in Bioinformatics), 10192 LNAI, pp. 455-464.

2017/42 Kubicek, J., Timkovic, J., Penhaker, M., Augustynek, M., Bryjova, I., Kasik, V.

Extraction of optical disc geometrical parameters with using of active snake model with

gradient directional information (2017) Lecture Notes in Computer Science (including sub-

series Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 10192

LNAI, pp. 445-454.

2017/41 Kubicek, J., Penhaker, M., Bryjova, I., Augustynek, M., Zapletal, T., Kasik, V.

Tracking of Bone Reparation Process with Using of Periosteal Callus Extraction Based o

Fuzzy C-means Algorithm (2017) Studies in Computational Intelligence, 710, pp. 271-280.

2017/40 Penhaker, M., Novakova, M., Knybel, J., Kubicek, J., Grepl, J., Kasik, V., Zapletal, T.

Breathing Movement Analysis for Adjustment of Radiotherapy Planning (2017) Studies in

Computational Intelligence, 710, pp. 105-116.

2017/39 Svobodova, B., Penhaker, M., Kasik, V., Augustynek, M., Kubicek, J. Design of spectro-

photometer for neonatal phototherapy (2017) SAMI 2017 - IEEE 15th International Sym-

posium on Applied Machine Intelligence and Informatics, Proceedings, art. no. 7880345,

pp. 417-422.

2017/38 Kubicek, J., Bryjova, I., Klosova, H., Stetinsky, J., Penhaker, M. The modelling of the post-

7

operative perfusion in burns from LDI data (2017) Advances in Electrical and Electronic

Engineering, 15 (1), pp. 63-70.

2017/37 Ondraczka, T., Machacek, Z., Kubicek, J., Bryjova, I., Cerny, M., Koziorek, J., Prochazka,

V. Automated image detection of the main bloodstream stem from CT angiography image

(2016) IFAC-PapersOnLine, 49 (25), pp. 109-114.

2017/36 Bryjová, I., Kubíček, J., Kašík, V., Peter, L., Kamenský, D., Klosová, H. Design of the

DSC1 Skin Colorimeter: Pilot Testing on Hypertrophic Burn Scars (2016) IFAC-

PapersOnLine, 49 (25), pp. 499-504.

2016/35

Bryjova, I., Kubicek, J., Moravec, J., Stetinsky, J., Penhaker, M. The evaluation of light

conditions influence and corrections upon Doppler blood perfusion imagining (2016) Ad-

vances in Electrical and Electronic Engineering, 14 (4Special Issue), pp. 421-428.

2016/34 Kubicek, J., Timkovic, J., Slonka, J., Penhaker, M., Augustynek, M. & Bryjova, I. 2016,

"Optical nerve segmentation using the active shape method", Lekar a Technika, vol. 46, no.

1, pp. 13-20.

2016/33 Bryjova, I., Kubicek, J. The sofware application for the contrast agent optimization within

radiodiagnostic examination (2016) Proceedings - 2016 5th IIAI International Congress on

Advanced Applied Informatics, IIAI-AAI 2016, art. no. 7557567, pp. 7-12.

2016/32

Kubicek, J., Bryjova, I., Penhaker, M., Augustynek, M. Extraction of myocardial fibrosis

from MR using fuzzy soft thresholding algorithm (2016) Proceedings - 2016 5th IIAI Inter-

national Congress on Advanced Applied Informatics, IIAI-AAI 2016, art. no. 7557566, pp.

1-6.

2016/31

Penhaker, M., Geyerova, R., Kubicek, J., Augustynek, M., Panackova, K., Novak, V.

Weariness and vigilance data mining using mobile platform assessment (2016) Proceedings

- 2016 5th IIAI International Congress on Advanced Applied Informatics, IIAI-AAI 2016,

art. no. 7557568, pp. 13-18.

2016/30

Bryjová, I., Kubicek, J., Skutova, H. Comparison and classification of acoustic levels of

MRI sequences (2016) IFMBE Proceedings, 57, pp. 768-772.

2016/29

Kubicek, J., Penhaker, M., Bryjova, I., Augustynek, M. Classification method for macular

lesions using fuzzy thresholding method (2016) IFMBE Proceedings, 57, pp. 239-244.

2016/28

Oczka, D., Penhaker, M., Knybel, L., Kubicek, J., Selamat, A. Design and implementation

of an algorithm for system of exposure limit in radiology (2016) Studies in Computational

Intelligence, 642, pp. 433-443.

2016/27

Kubicek, J., Bryjova, I., Penhaker, M., Kodaj, M., Augustynek, M. Surface of articular car-

tilage extraction using fuzzy C-means segmentation (2016) Studies in Computational Intel-

ligence, 642, pp. 209-219.

2016/26

Peter, L., Vorek, I., Massot, B., Kubicek, J. Determining the state of cardiovascular system

using non-invasive multichannel photoplethysmography (2016) Lecture Notes of the Insti-

tute for Computer Sciences, Social-Informatics and Telecommunications Engineering,

LNICST, 165, pp. 404-412.

2016/25

Peter, L., Vorek, I., Massot, B., Kubicek, J. Multichannel photoplethysmography: Develop-

ing of precise measuring device for analysis of cardiovascular systém (2016) Lecture Notes

of the Institute for Computer Sciences, Social-Informatics and Telecommunications Engi-

neering, LNICST, 165, pp. 413-419.

2016/24

Augustynek, M., Sterba, J., Cihak, J., Kubicek, J., Penhaker, M. Diagnosis of vascular ac-

cess for hemodialysis using software application (2016) Lecture Notes of the Institute for

Computer Sciences, Social-Informatics and Telecommunications Engineering, LNICST,

165, pp. 420-427.

2016/23

Kubicek, J., Rehacek, T., Penhaker, M., Bryjova, I. Software simulation of CT reconstruc-

tions and artifacts (2016) Lecture Notes of the Institute for Computer Sciences, Social-

Informatics and Telecommunications Engineering, LNICST, 165, pp. 428-437

2016/22

Kubicek, J., Bryjova, I., Penhaker, M. Macular lesions extraction using active appearance

method (2016) Lecture Notes of the Institute for Computer Sciences, Social-Informatics and

Telecommunications Engineering, LNICST, 165, pp. 438-447.

2016/21

Kubicek, J., Valosek, J., Penhaker, M., Bryjova, I. Extraction of chondromalacia knee carti-

lage using multi slice thresholding method (2016) Lecture Notes of the Institute for Com-

puter Sciences, Social-Informatics and Telecommunications Engineering, LNICST, 165, pp.

395-403.

2016/20

Augustynek, M., Kubicek, J., Cerny, M., Bachrata, M. Model kidney function in stabilizing

of blood pressure (2016) Lecture Notes in Computer Science (including subseries Lecture

Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 9621, pp. 430-439.

2016/19

Kubicek, J., Bryjova, I., Penhaker, M., Kodaj, M., Augustynek, M. Extraction of myocardial

fibrosis using iterative active shape method (2016) Lecture Notes in Computer Science (in-

cluding subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformat-

ics), 9621, pp. 698-707.

2015/18

Kubicek, J., Bryjova, I., Penhaker, M., Javurkova, J., Kolarcik, L. Segmentation of macular

lesions using active shape contour method, (2016) Advances in Intelligent Systems and

Computing, 423, pp. 213-221.

2015/17

Bryjova, I., Kubicek, J., Dembowski, M., Kodaj, M., Penhaker, M. Reconstruction of 4D

CTA brain perfusion images using transformation methods, (2016) Advances in Intelligent

Systems and Computing, 423, pp. 203-211.

2015/16

Kubicek, J., Valosek, J., Penhaker, M., Bryjova, I., Grepl, J. Extraction of blood vessels

using multilevel thresholding with color coding (2016) Lecture Notes in Electrical Engi-

9

neering, 362, pp. 397-406.

2015/15

Augustynek, M., Zemanova, A., Kubicek, J., Penhaker, M. Model of drugs penetration

through biological membrane (2016) Lecture Notes in Electrical Engineering, 362, pp. 481-

492.

2015/14

Kubicek, J., Timkovic, J., Augustynek, M., Penhaker, M., Pokrývková, M. Optical nerve

disc segmentation using circual integro differencial operator (2016) Lecture Notes in Elec-

trical Engineering, 362, pp. 387-396.

2015/13

Grepl, J., Penhaker, M., Kubicek, J., Liberda, A., Mashinchi, R. Real time signal detection

and computer visualization of the patient respiration (2016) Lecture Notes in Electrical

Engineering, 362, pp. 783-793.

2015/12

Kubicek, J., Penhaker, M., Grepl, J., Selamat, A., Majernik, J., Hudak, R., Snorik, J., Au-

gustynek, M. Hemodynamic parameters measurement using pulsed doppler effect (2015)

IFAC Proceedings Volumes (IFAC-PapersOnline), 48 (4), pp. 409-412.

2015/11

Penhaker, M., Kubicek, J., Grepl, J., Heczko, M., Augustynek, M. Implementation of con-

trolled pacemaker (2015) IFAC Proceedings Volumes (IFAC-PapersOnline), 48 (4), pp.

413-417.

2015/10

Grepl, J., Penhaker, M., Kubícek, J., Liberda, A., Selamat, A., Majerník, J., Hudák, R. Real

time breathing signal measurement: Current methods (2015) IFAC Proceedings Volumes

(IFAC-PapersOnline), 48 (4), pp. 153-158.

2015/9

Kubicek J., Penhaker M., Pavelova K., Selamat A., Hudak R., Majernik J. Segmentation of

MRI data to extract the blood vessels based on fuzzy thresholding (2015), Studies in Com-

putational Intelligence, 598, pp. 43-52.

2014/8

Kubicek, J., Penhaker, M., Measurement and simulation of pacemaker supply management

(2014), Studies in Computational Intelligence, 551, pp. 265-273.

2014/7

Kubicek, J., Penhaker, M., Kahankova, R., Design of a synthetic ECG signal based on the

Fourier series (2014), Proceedings of the 2014 International Conference on Advances in

Computing, Communications and Informatics, ICACCI 2014, art. no. 6968312, pp. 1881-

1885.

2014/6

Kubicek, J., Penhaker, M., Fuzzy algorithm for segmentation of images in extraction of ob-

jects from MRI (2014), Proceedings of the 2014 International Conference on Advances in


1427.

2014/5

Kubicek, J., Penhaker, M., Bryjova, I., Kodaj, M., Articular cartilage defect detection based

on image segmentation with colour mapping (2014), Lecture Notes in Computer Science


matics), 8733, pp. 214-222.

2014/4

Kubicek, J., Creation of the beam hardening artifact (2014), IFMBE Proceedings, 43, pp.

196-198.

2014/3

Grepl, J., Penhaker, M., Kubicek, J., Prokop, J., Peter, L., Pressure distribution measure-

ment of close fitting clothes on human body (2014), IFMBE Proceedings, 43, pp. 436-439.

2014/2

Kubicek, J., Penhaker, M., Guidelines for modelling BED in simultaneous radiotherapy

(2014), IFMBE Proceedings, 43, pp. 271-274.

2013/1

Kubicek, J., Penhaker, M., Feltl, D., Cvek, J., Guidelines for modelling BED in simultane-

ous radiotherapy of two volumes: Tpv1 and tpv2 (2013), SAMI 2013 - IEEE 11th Interna-

tional Symposium on Applied Machine Intelligence and Informatics, Proceedings, art. no.

6480960, pp. 131-135.

Indexed Publications – Web of Science:

2018/37 Kubicek, J., Bryjova, I., Somek, M., Penhaker, M., Augustynek, M., Cerny, M., Oczka, D.,

Timkovic, J. Optimization of Laser Therapy Parameters in Dependence of Spot Size (2018)

IFAC-PapersOnLine, 51 (6), pp. 360-365.

2018/36 Kubicek, J., Cerny, M., Penhaker, M., Augustynek, M., Molnarova, K., Kosturikova, J.,

Baleja, L., Oczka, D., Timkovic, J. Modeling and Features Extraction of Blood Vessels

based on Soft Regional Segmentation (2018) IFAC-PapersOnLine, 51 (6), pp. 366-371.

2018/35 Bryjova, I., Kubicek, J., Kasik, V., Kamensky, D., Klosova, H., Penhaker, M., Cerny, M.

Objective measurement of hypertrophic scars using skin colorimeter (2017) BIODEVICES

2017 - 10th International Conference on Biomedical Electronics and Devices, Proceedings;

Part of 10th International Joint Conference on Biomedical Engineering Systems and Tech-

nologies, BIOSTEC 2017, 2017-January, pp. 126-133.

2018/34 Kubicek, J., Bryjova, I., Penhaker, M., Kasik, V., Labza, Z., Cerny, M., Augustynek, M.

Modeling of blood perfusion in dependence of scanning angle from LDPI data (2017)

BIODEVICES 2017 - 10th International Conference on Biomedical Electronics and Devic-

es, Proceedings; Part of 10th International Joint Conference on Biomedical Engineering

Systems and Technologies, BIOSTEC 2017, 2017-January, pp. 110-117.

2018/33 Penhaker, M., Polomik, J., Kubicek, J., Kasik, V. Biopotential conducting polymer elec-

trodes design and realization for ECG measurement (2017) BIODEVICES 2017 - 10th In-

ternational Conference on Biomedical Electronics and Devices, Proceedings; Part of 10th

International Joint Conference on Biomedical Engineering Systems and Technologies,

BIOSTEC 2017, 2017-January, pp. 134-141.

2018/32 Kubicek, J., Penhaker, M., Cerny, M., Augustynek, M., Korhelik, K., Vodakova, A., Oczka,

D. Analysis and modeling of secondary X-ray effect on structure of skiagraphy images




2018/31 Kubicek, J., Faure-Brac, B., Penhaker, M., Scurek, R., Cerny, M., Augustynek, M., Oczka,

11

D. Modeling of blood alcohol content using multiregional segmentation from ir images




2018/30 Augustýnek, M., Laryš, D., Kubíček, J., Marešová, P., Kuča, K. Use Effectiveness of Medi-

cal Devices: A Case Study on the Deployment of Ultrasonographic Devices (2018) Thera-

peutic Innovation and Regulatory Science, 52 (4), pp. 499-506.

2018/29 Kubicek, J., Augustynek, M., Vodakova, A., Penhaker, M., Cerny, M., Oczka, D. Segmenta-

tion and modeling of scattered RTG irradiation on quality of skiagraphy images in clinical

conditions (2018) 2017 IEEE Conference on Big Data and Analy-tics, ICBDA 2017, 2018-

January, pp. 105-110.

2018/28 Kubicek, J., Augustynek, M., Penhaker, M., Cerny, M., Oczka, D. Analysis and modeling of

alcohol intoxication from IR images based on multiregional image segmentation and corre-

lation with breath analysis (2018) 2017 IEEE Conference on Big Data and Analytics,

ICBDA 2017, 2018-January, pp. 49-54.

2017/27 Kubicek, J., Bryjova, I., Klosova, H., Stetinsky, J., Penhaker, M. The modelling of the post-

operative perfusion in burns from LDI data (2017) Advances in Electrical and Electronic

Engineering, 15 (1), pp. 63-70.

2017/26 Kubicek, J., Augustynek, M., Penhaker, M. Dynamical Modelling of Pulmonary Compart-

ment Response Using Differential Approach (2017) Proceedings - IEEE Symposium on

Computer-Based Medical Systems, 2017-June, art. no. 8104150, pp. 25-29.

2017/25 Svobodova, B., Penhaker, M., Kasik, V., Augustynek, M., Kubicek, J. Design of spectro-

photometer for neonatal phototherapy (2017) SAMI 2017 - IEEE 15th International Sym-

posium on Applied Machine Intelligence and Informatics, Proceedings, art. no. 7880345,

pp. 417-422.

2017/24 Penhaker, M., Novakova, M., Knybel, J., Kubicek, J., Grepl, J., Kasik, V., Zapletal, T.

Breathing Movement Analysis for Adjustment of Radiotherapy Planning (2017) Studies in

Computational Intelligence, 710, pp. 105-116.

2017/23 Kubicek, J., Penhaker, M., Bryjova, I., Augustynek, M., Zapletal, T., Kasik, V. Tracking of

Bone Reparation Process with Using of Periosteal Callus Extraction Based o Fuzzy C-

means Algorithm (2017) Studies in Computational Intelligence, 710, pp. 271-280.

2017/22 Kubicek, J., Timkovic, J., Penhaker, M., Augustynek, M., Bryjova, I., Kasik, V. Extraction

of optical disc geometrical parameters with using of active snake model with gradient direc-

tional information (2017) Lecture Notes in Computer Science (including subseries Lecture

Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 10192 LNAI, pp. 445-

454.

2017/21 Kubicek, J., Bryjova, I., Valosek, J., Penhaker, M., Augustynek, M., Cerny, M., Kasik, V.

Segmentation of vascular calcifications and statistical analysis of calcium score (2017)

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelli-

gence and Lecture Notes in Bioinformatics), 10192 LNAI, pp. 455-464.

2016/20 Bryjova, I., Kubicek, J., Moravec, J., Stetinsky, J., Penhaker, M. The evaluation of light

conditions influence and corrections upon Doppler blood perfusion imagining (2016) Ad-

vances in Electrical and Electronic Engineering, 14 (4Special Issue), pp. 421-428.

2016/19 Ondraczka, T., Machacek, Z., Kubicek, J., Bryjova, I., Cerny, M., Koziorek, J., Prochazka,

V. Automated image detection of the main bloodstream stem from CT angiography image

(2016) IFAC-PapersOnLine, 49 (25), pp. 109-114.

2016/18 Bryjová, I., Kubíček, J., Kašík, V., Peter, L., Kamenský, D., Klosová, H. Design of the

DSC1 Skin Colorimeter: Pilot Testing on Hypertrophic Burn Scars (2016) IFAC-

PapersOnLine, 49 (25), pp. 499-504.

2016/17 Kubicek, J., Bryjova, I., Penhaker, M., Kodaj, M., Augustynek, M. Surface of articular car-

tilage extraction using fuzzy C-means segmentation (2016) Studies in Computational Intel-

ligence, 642, pp. 209-219.

2016/16 Oczka, D., Penhaker, M., Knybel, L., Kubicek, J., Selamat, A. Design and implementation

of an algorithm for system of exposure limit in radiology (2016) Studies in Computational

Intelligence, 642, pp. 433-443.

2016/15 Kubicek, J., Bryjova, I., Penhaker, M., Augustynek, M. Extraction of myocardial fibrosis

from MR using fuzzy soft thresholding algorithm (2016) Proceedings - 2016 5th IIAI Inter-

national Congress on Advanced Applied Informatics, IIAI-AAI 2016, art. no. 7557566, pp.

1-6.

2016/14 Bryjova, I., Kubicek, J. The sofware application for the contrast agent optimization within

radiodiagnostic examination (2016) Proceedings - 2016 5th IIAI International Congress on

Advanced Applied Informatics, IIAI-AAI 2016, art. no. 7557567, pp. 7-12.

2016/13 Penhaker, M., Geyerova, R., Kubicek, J., Augustynek, M., Panackova, K., Novak, V. Wea-

riness and vigilance data mining using mobile platform assessment (2016) Pro-ceedings -

2016 5th IIAI International Congress on Advanced Applied Informatics, IIAI-AAI 2016,

art. no. 7557568, pp. 13-18.

2016/12 Augustynek, M., Kubicek, J., Cerny, M., Bachrata, M. Model kidney function in stabilizing

of blood pressure (2016) Lecture Notes in Computer Science (including subseries Lecture

Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 9621, pp. 430-439.

2016/11 Kubicek, J., Bryjova, I., Penhaker, M., Kodaj, M., Augustynek, M. Extraction of myocardi-

al fibrosis using iterative active shape method (2016) Lecture Notes in Computer Science


13

matics), 9621, pp. 698-707.

2016/10 Kubicek, J., Penhaker, M., Bryjova, I., Augustynek, M. Classification method for macular

lesions using fuzzy thresholding method (2016) IFMBE Proceedings, 57, pp. 239-244.

2016/9 Bryjová, I., Kubicek, J., Skutova, H. Comparison and classification of acoustic levels of

MRI sequences (2016) IFMBE Proceedings, 57, pp. 768-772.

2015/8 Kubicek J., Penhaker M., Pavelova K., Selamat A., Hudak R., Majernik J. Segmentation of

MRI data to extract the blood vessels based on fuzzy thresholding (2015), Studies in Com-

putational Intelligence, 598, pp. 43-52.

2015/7 Grepl, J., Penhaker, M., Kubicek, J., Liberda, A., Selamat, A., Majerník, J., Hudák, R. Real

time breathing signal measurement: Current methods (2015) IFAC Procee-dings Volumes

(IFAC-PapersOnline), 48 (4), pp. 153-158.

2015/6 Kubicek, J., Penhaker, M., Grepl, J., Selamat, A., Majernik, J., Hudak, R., Snorik, J., Au-

gustynek, M. Hemodynamic parameters measurement using pulsed doppler effect (2015)

IFAC Proceedings Volumes (IFAC-PapersOnline), 48 (4), pp. 409-412.

2015/5 Penhaker, M., Kubicek, J., Grepl, J., Heczko, M., Augustynek, M. Implementation of con-

trolled pacemaker (2015) IFAC Proceedings Volumes (IFAC-PapersOnline), 48 (4), pp.

413-417.

2014/4 Kubicek, J., Penhaker, M., Fuzzy algorithm for segmentation of images in extraction of ob-

jects from MRI (2014), Proceedings of the 2014 International Conference on Advances in


1427.

2014/3 Kubicek, J., Penhaker, M., Kahankova, R., Design of a synthetic ECG signal based on the

Fourier series (2014), Proceedings of the 2014 International Conference on Advances in


1885.

2014/2 Kubicek, J., Penhaker, M., Bryjova, I., Kodaj, M., Articular cartilage defect detection based

on image segmentation with colour mapping (2014), Lecture Notes in Computer Science


matics), 8733, pp. 214-222.

2014/1 1. Kubicek, J., Penhaker, M., Feltl, D., Cvek, J., Guidelines for modelling BED in simultane-

ous radiotherapy of two volumes: Tpv1 and tpv2 (2013), SAMI 2013 - IEEE 11th Interna-

tional Symposium on Applied Machine Intelligence and Informatics, Proceedings, art. no.

6480960, pp. 131-135.

Conference Membership

SOMET 2017, 2018 International Conference on Intelligent Software Methodologies,

Tools, and Techniques

ACIIDS 2018, 2019 Asian Conference on Intelligent Information and Database Systems

YBERC 2016 Biomedical Conference of Young Biomedical Engineers and Re-

searchers

ICITS 2018, 2019 International Conference on Information Technology & Systems

Healthcom 2018 EEE International Conference on E-health Networking, Application

& Services

ALLSENSORS 2018,

2019

International Conference on Advances in Sensors, Actuators, Meter-

ing and Sensing

BIOTECHNO 2018 International Conference on Bioinformatics, Biocomputational Sys-

tems and Biotechnologies

ICSP-AS 2018 3rd International Conference on Intelligent Computing and Signal

Processing-Autumn Session

WorldCist 2018, 2019 World Conference on Information Systems and Technologies

ICICT 2019 The 9th Annual International Conference of Information and Com-

munication Technology

ICGIP 2018 The 2018 10th International Conference on Graphics and Image Pro-

cessing

Organization of Special Section:

Main organisator of ISaMiB 2018 - Special Session on Intelligent Systems and Methods in Bio-

medicine in conference ACIIDS 2018 – Best special Section Award

Main organisator of IMAIBDSS 2019 - Special Session on Intelligent Methods and Artificial

Itelligence for Biomedical Decision Support Systems ACIIDS 2019

Journal Reviewer:

Artificial Intelligence in Medicine (Elsevier)

Journal of Visual Languages and Computing (Elsevier)

Swarm and Evolutionary Computation (Elsevier)

Journal of Thrombosis and Circulation

Internships:

2013 Centre of English Studies, Stroke Abbott Road 12, Worthing, West Sussex,

BN11 1HE, England, August 27, 2013 – September 10, 2013

Awarding:

WOFEX (Ph.D. Workshop of Faculty of Electrical Engineering and Com-

puter Science): Motivational scholarship for doctoral students in VŠB –

Technical University of Ostrava for the best paper in WOFEX 2015,

WOFEX 2016

15

Best special Section Award: ISaMiB 2018 - Special Session on Intelligent

Systems and Methods in Biomedicine in conference ACIIDS 2018

Language Skills:

English language – B2

Computer Skills:

MATLAB

Mathematica

Python

C#, C++, Java

MS Office (Word, Excel, Powerpoint)

curriculum vitae jan kubíček › upload_path › kindeditor › 201810 › jan... · working...

Documents