crown gall and the diversity and detection of its … · crown gall and the diversity and detection...
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CROWN GALL AND THE DIVERSITY AND DETECTION OF ITS CAUSAL
AGENT
Joanna Puławska Research Institute of Horticulture, Skierniewice, Poland
COST FA1104 Meeting 13-15. 10.2014 Bordeaux, France
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http://rasbinbasnet.blogspot.com/
Agrobacterium/Rhizobium spp
CROWN GALL
Caused by tumorigenic Agrobacterium/Rhizobium spp on
over 640 plant species
• Genetic character of the disease
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Economic significance The disease seldom kills plants, but it can elicit lack of vigour
and reduced growth and crop
Highest losses occur in young plants
Infected plants, especially those with tumors on the main
roots and collar, are unfit for marketing
Losses of 10-30% of nursery stock of fruit trees caused by
crown gall are common - In exceptional cases they can reach
80% (Schroth et al., 1971; New and Kerr, 1972; Garret, 1987)
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Crown gall is caused NOT by ONE bacterial species but by up to now by 8
species:
Agrobacterium radiobacter
Agrobacterium rhizogenes
Agrobacterium larrymoorei
Agrobacterium rubi
Agrobacterium vitis
Rhizobium skierniewicense (Puławska et al. 2012)
Rhizobium nepotum (Puławska et al. 2012)
Rhizobium pusense
+ 9 genomospecies within A. tumefaciens complex (biovar 1)
Causal agent
Rhizobium
Allorhizobium
Agrobacterium tumefaciens
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AIM: detection, identification and characteristics of bacteria causing crown gall on stone fruits in Poland
39/79
Isolation on media: MG+Te, 1A+2E
•Phenotypic characteristics •16S rRNA, atpD, glnA, gyrB, recA i rpoB;
PCR with primers tms2F1 i tms2R2 complementary to gene tms2 on pTi
Puławska et al., System. Appl. Microbiol. 2006
Puławska & Sobiczewski, J. Appl. Microbiol. 2005
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Results
1200 isolates 418 pre-identified as Agrobacterium (Rhizobium) spp
307 – PCR = test on sunflower
9 – PCR „+” but sunflower „-”
2 – PCR „-” but sunflower „+”
318 pathogenic in plant test or PCR 380 – biovar 2/Rhizobium rhizogenes
18 – biovar 1/Agrobacterium tumefaciens complex
4 – Rhizobium nepotum
1 – Rhizobium skierniewicense
15 – not classfied
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pTi
1200 isolates 418 pre-identified as Agrobacterium (Rhizobium) spp
307 – PCR = test on sunflower
9 – PCR „+” but sunflower „-”
2 – PCR „-” but sunflower „+”
309 pathogenic in plant test or PCR
Nopaline type pTi
12 T-DNA RFLP groups
Mutations?
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R.giardinii/R.herbae relatives
pTi
pTi
recA ML tree
F5.1, AL5.1.8 T-DNA PCRs – negative
virC - positive
test on plants - positive
lack of symbiotic genes
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F5.1 genome sequencing
ANI between F5.1 and R. giardinii H152 ~90%
different species
No mapping of sequencing reads to any known T-DNA sequence
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Conclusions In Poland crown gall of stone fruit is caused
mostly by nopaline strains of R. rhizogenes (biovar 2)
Two new species – R. skierniewicense and R. nepotum of tumorigenic bacteria were discovered and validly published
Novel species of bacteria causing crown gall will be desribed
Unknown mechanism of pathogenicity of F5.1
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ACKNOWLEDGEMENTS
This work was done in the frame of COST FA1104 “Sustainable production of high-quality cherries for the European market”
Support by National Science Centre grant No UMO-2013/08/M/NZ9/00138
Technical help – Halina Kijańska
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THANK YOU!