contribution of sequence variation in drosophila actins to ... · introduction actin is one of the...

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Introduction Actin is one of the most abundant and highly conserved proteins in eukaryotes (Sheterline et al., 1999). As a major cytoskeletal component it is essential for a variety of cellular functions including determination of cell shape, cell motility, cytokinesis, intracellular transport and muscle contractility. Filamentous actin, F-actin, occurs in many different forms: as cortical actin found in all cells, as bundled or branched assemblies building up filopodia and lamellipodia, as thin filaments found in muscle sarcomeres, and many more. We are interested in understanding what determines the organisation of actin into these different filamentous structures. Several studies have shown that certain accessory proteins are only associated with specific actin structures, and some studies indicate that these proteins can even dictate the type of filamentous actin-based structure that will be formed, e.g. filopodia versus lamellipodia (Mejillano et al., 2004; Revenu et al., 2004). Alternatively, the formation of particular actin structures could be dictated by the actin protein itself, since multicellular organisms contain several actin proteins. If this were the case, the difference in actin proteins could be used as a simple tool to label distinct actin structures, e.g. by expressing fluorescent protein-tagged versions of certain actins. The genomes of mouse, human and fly contain six actin gene loci (Fig. 1A). Actin proteins differ in only a few amino acids within a species and even between distant species such as fly and mouse. The high conservation at the protein level raises the question as to why multiple actin genes have been retained through evolution. In many cases, multigene families arise through duplication of ancestral (single copy) genes and often diverge in the function of the encoded proteins or the regulation of the genes or both, making all copies essential over time (Meyer and Van De Peer, 2003). For actin proteins, it is not clear which of these options has occurred. In the mouse, two of the muscle actins are specifically expressed in striated muscles (-skeletal and -cardiac) and two in smooth muscles (-vascular and -enteric); the other two actins are non-muscle actins, also termed cytoplasmic actins (Sheterline et al., 1999). Similarly to mouse, Drosophila has four muscle-specific actins, with actin 87E being expressed throughout life, actin 57B being expressed in embryonic and larval muscles and actins 79B and 88F being mostly expressed in pupal and adult muscles (Fig. 1C). In addition to the temporal restriction of expression, the fly actins are also restricted in their spatial expression patterns (Fyrberg et al., 1983). As well as regulation of actins in different cells by transcriptional control, actin production at specific locations within a cell can also be regulated, by subcellular localisation of actin mRNAs. For example, the mRNA for vertebrate - actin is selectively enriched at the motile cell periphery (Hill and Gunning, 1993), and a short cis-acting ‘zipcode’ in the 3 untranslated region of this mRNA is necessary for enrichment (Kislauskis et al., 1994). Similarly, in immature cortical 3937 Actin is a highly conserved protein important for many cellular functions including motility, contraction in muscles and intracellular transport. Many eukaryotic genomes encode multiple actin protein isoforms that differ from each other by only a few residues. We addressed whether the sequence differences between actin paralogues in one species affect their ability to integrate into the large variety of structures generated by filamentous actin. We thus ectopically expressed all six Drosophila actins as fusion proteins with green fluorescent protein (GFP) in a variety of embryonic, larval and adult fly tissues. We found that each actin was able to integrate into most actin structures analysed. For example, in contrast to studies in mammalian cells, the two Drosophila cytoplasmic actins were incorporated into muscle sarcomeres. However, there were differences in the efficiency with which each actin was incorporated into specific actin structures. The most striking difference was observed within the Z-lines of the sarcomeres: one actin was specifically excluded and we mapped this feature to one or both of two residues within the C-terminal half of the protein. Thus, in Drosophila, the primary sequence of different actins does affect their ability to incorporate into actin structures, and so specific GFPactins may be used to label certain actin structures particularly well. Key words: Cytoskeleton, Muscle, Sarcomere, Filopodia, Oogenesis Summary Contribution of sequence variation in Drosophila actins to their incorporation into actin-based structures in vivo Katja Röper, Yanlan Mao and Nicholas H. Brown* Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Anatomy, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK *Author for correspondence (e-mail: [email protected]) Accepted 3 June 2005 Journal of Cell Science 118, 3937-3948 Published by The Company of Biologists 2005 doi:10.1242/jcs.02517 Research Article Journal of Cell Science

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Page 1: Contribution of sequence variation in Drosophila actins to ... · Introduction Actin is one of the most abundant and highly conserved proteins in eukaryotes (Sheterline et al., 1999)

IntroductionActin is one of the most abundant and highly conservedproteins in eukaryotes (Sheterline et al., 1999). As a majorcytoskeletal component it is essential for a variety of cellularfunctions including determination of cell shape, cell motility,cytokinesis, intracellular transport and muscle contractility.Filamentous actin, F-actin, occurs in many different forms: ascortical actin found in all cells, as bundled or branchedassemblies building up filopodia and lamellipodia, as thinfilaments found in muscle sarcomeres, and many more. We areinterested in understanding what determines the organisationof actin into these different filamentous structures. Severalstudies have shown that certain accessory proteins are onlyassociated with specific actin structures, and some studiesindicate that these proteins can even dictate the type offilamentous actin-based structure that will be formed, e.g.filopodia versus lamellipodia (Mejillano et al., 2004; Revenuet al., 2004). Alternatively, the formation of particular actinstructures could be dictated by the actin protein itself, sincemulticellular organisms contain several actin proteins. If thiswere the case, the difference in actin proteins could be used asa simple tool to label distinct actin structures, e.g. byexpressing fluorescent protein-tagged versions of certainactins.

The genomes of mouse, human and fly contain six actin geneloci (Fig. 1A). Actin proteins differ in only a few amino acidswithin a species and even between distant species such as fly

and mouse. The high conservation at the protein level raisesthe question as to why multiple actin genes have been retainedthrough evolution. In many cases, multigene families arisethrough duplication of ancestral (single copy) genes and oftendiverge in the function of the encoded proteins or the regulationof the genes or both, making all copies essential over time(Meyer and Van De Peer, 2003). For actin proteins, it is notclear which of these options has occurred. In the mouse, twoof the muscle actins are specifically expressed in striatedmuscles (�-skeletal and �-cardiac) and two in smooth muscles(�-vascular and �-enteric); the other two actins are non-muscleactins, also termed cytoplasmic actins (Sheterline et al., 1999).Similarly to mouse, Drosophila has four muscle-specificactins, with actin 87E being expressed throughout life, actin57B being expressed in embryonic and larval muscles andactins 79B and 88F being mostly expressed in pupal and adultmuscles (Fig. 1C). In addition to the temporal restriction ofexpression, the fly actins are also restricted in their spatialexpression patterns (Fyrberg et al., 1983).

As well as regulation of actins in different cells bytranscriptional control, actin production at specific locationswithin a cell can also be regulated, by subcellular localisationof actin mRNAs. For example, the mRNA for vertebrate �-actin is selectively enriched at the motile cell periphery (Hilland Gunning, 1993), and a short cis-acting ‘zipcode’ in the 3�untranslated region of this mRNA is necessary for enrichment(Kislauskis et al., 1994). Similarly, in immature cortical

3937

Actin is a highly conserved protein important for manycellular functions including motility, contraction in musclesand intracellular transport. Many eukaryotic genomesencode multiple actin protein isoforms that differ fromeach other by only a few residues. We addressed whetherthe sequence differences between actin paralogues in onespecies affect their ability to integrate into the large varietyof structures generated by filamentous actin. We thusectopically expressed all six Drosophila actins as fusionproteins with green fluorescent protein (GFP) in a varietyof embryonic, larval and adult fly tissues. We found thateach actin was able to integrate into most actin structuresanalysed. For example, in contrast to studies in mammaliancells, the two Drosophila cytoplasmic actins were

incorporated into muscle sarcomeres. However, there weredifferences in the efficiency with which each actin wasincorporated into specific actin structures. The moststriking difference was observed within the Z-lines of thesarcomeres: one actin was specifically excluded and wemapped this feature to one or both of two residues withinthe C-terminal half of the protein. Thus, in Drosophila, theprimary sequence of different actins does affect theirability to incorporate into actin structures, and so specificGFPactins may be used to label certain actin structuresparticularly well.

Key words: Cytoskeleton, Muscle, Sarcomere, Filopodia, Oogenesis

Summary

Contribution of sequence variation in Drosophilaactins to their incorporation into actin-basedstructures in vivoKatja Röper, Yanlan Mao and Nicholas H. Brown*Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Anatomy, University of Cambridge, Tennis Court Road,Cambridge CB2 1QN, UK*Author for correspondence (e-mail: [email protected])

Accepted 3 June 2005Journal of Cell Science 118, 3937-3948 Published by The Company of Biologists 2005doi:10.1242/jcs.02517

Research Article

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neurons �-actin mRNA and protein are enriched in growthcones, whereas �-actin mRNA is found in the cell body andthe protein is spread uniformly throughout the cell (Bassell etal., 1998). Thus, the different actin genes are certainlyregulated differently, at both transcriptional and post-transcriptional levels. Nonetheless, even small differences inprimary sequence could affect the function of actins.

If the type of actin has an influence on the type of actinstructure formed, in addition to the effects of actin-bindingproteins, then we would expect several actins to be co-expressed within one cell. In vertebrate and mammalian tissueculture cells at least two to four appear to be present in eachcell (Song et al., 2000). In Drosophila, one cytoplasmic actin,5C, is thought to be expressed in every cell plus an additional

Journal of Cell Science 118 (17)

Hs β-actin

Hs γ1-actin

Hs α1-actin

Hs α−cardiac-actin

Hs α2-actin

Hs γ2-actin

Dm actin5C

Dm actin42A

Dm actin57B

Dm actin87E

Dm actin88F

Dm actin79B

99100100100100100100100

199200200200200200200200

299300300300300300300300

375376376376376376376376

Hs β-actin 1Dm actin5C 1Dm actin42A 1Dm actin57B 1Dm actin79B 1Dm actin87E 1Dm actin88F 1Hs γ2-actin 1

Hs β-actin 100Dm actin5C 101Dm actin42A 101Dm actin57B 101Dm actin79B 101Dm actin87E 101Dm actin88F 101Hs γ2-actin 101

Hs β-actin 200Dm actin5C 201Dm actin42A 201Dm actin57B 201Dm actin79B 201Dm actin87E 201Dm actin88F 201Hs γ2-actin 201

Hs β-actin 300Dm actin5C 301Dm actin42A 301Dm actin57B 301Dm actin79B 301Dm actin87E 301Dm actin88F 301Hs γ2-actin 301

MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEMCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEMCDEEASALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILSLKYPIEHGIITNWDDMEKVWHHTFYNELRVAPEMCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEMCDDDAGALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEMCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPE

EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFALPHAILRLDLAGRDLTDYLMKILTERGYSEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYS

FTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANIVMFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRTPEALFQPSFLGMESCGIHETVYQSIMKCDVDIRKDLYANNVLFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANIVMFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANSVLFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVL

SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCFSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCFSGGTTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCFSGGTTMYPGIADRMQKEITSLAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCFSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCFSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCFSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCFSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKPEYDEAGPSIVHRKCF

*

stage tissue

embryo

actin 5C

actin 42A

actin 57B

actin 79B

actin 87E

actin 88F

cytoplasmic, ubiquitous

cytoplasmic

body wall muscle

thorax /leg muscle, wing

body wall muscle

indirect flight muscle

larva pupa adult

CB

A

Fig. 1. Sequence, phylogenetic analysis and timing of expression of all actin proteins inDrosophila. (A) Alignment of the six Drosophila and two human actin proteins. Nomenclature ofthe fly actins indicates the chromosome location of the gene, e.g. actin5C is located at 5C on the X.Hs �-actin: human cytoplasmic �-actin; Hs �2-actin: human enteric �2-actin. Colours indicateresidues conserved between groups of actins in flies or human (see also B): blue indicates

cytoplasmic actin-specific residues; red indicates residues specific to fly cytoplasmic actins; yellow, human cytoplasmic actins (including in Hs�1-actin, which is not shown); green, fly muscle-actin-specific residues; pink and purple, residues specific for actin79B and 88F, respectively;orange, human muscle-specific residues (conserved within the other human muscle actins not shown); grey, all other non-conserved residues.The asterisk indicates the single amino acid exchange in the mutant GFPactin79BR291H (see Fig. 7); the arrowhead, the point of domainswapping for the chimeric actins (see Fig. 8). (B) The phylogenetic relationship between all fly and human actins. Note that all fly actins aremore closely related to vertebrate cytoplasmic actins than to vertebrate muscle actins. Coloured bars correspond to the highlighting ofconserved residues in A. Hs �-actin: human cytoplasmic �-actin; Hs �1-actin: human cytoplasmic �1-actin; Hs �2-actin: human enteric �2-actin; Hs �1-actin: human skeletal �1-actin; Hs �2-actin: human smooth muscle �2-actin; Hs �-cardiac-actin: human cardiac �-actin.(C) Diagram of the timing of expression of actins during development of Drosophila as defined by Fyrberg et al. using northern blot analysis(Fyrberg et al., 1983). White equals no expression, and the darker the boxes are shaded, the higher the expression level.

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3939Comparison of Drosophila actins

muscle-specific actin isoform in every muscle cell (Fyrberg etal., 1983), but recent studies indicate that low levels of otheractins are present in various tissues (Nongthomba et al., 2001).

Data from mammalian cells have produced conflicting resultsas to the influence of the actin protein sequence on its ability toincorporate into different actin structures. Amongst endogenousactins there seems to be a preference for cytoplasmic actins tobe incorporated into the motile cell edges rather than stress fibres(DeNofrio et al., 1989; Hoock et al., 1991), but actin fibresisolated from smooth muscles have been shown by electronmicroscopic analysis to have both smooth muscle andcytoplasmic actins present within the same filament (Drew et al.,1991). Incorporation of ectopic actins produced varied results.For example, one study found that injected muscle and non-muscle actins showed identical patterns of distribution in bothfibroblasts and myocytes (McKenna et al., 1985), whilst anotherstudy showed that transfected muscle and non-muscle actins aredifferentially distributed in cultured smooth muscle and non-muscle cells (Mounier et al., 1997). These and other studies aredifficult to compare as they use very different methodologies andhave only addressed subsets of the actins present in one species.

In Drosophila, all six actins are more closely related tovertebrate cytoplasmic actins than to any of the muscle-specificvertebrate actins, with the two fly cytoplasmic actins being themost similar to the two vertebrate cytoplasmic actins (Fig. 1B).Despite the higher similarity between muscle and non-muscleactins in the fly, the actin structures found in Drosophila do notappear significantly different from those observed in mammals.Even though all fly actins are closely related, functionalsubstitution tests have shown that some can compensate forloss of another actin while others cannot. The deleterious lackof cytoplasmic actin5C can be rescued by reintroducing thecoding sequence of the second cytoplasmic actin, 42A, underthe regulatory control of act5C elements (Wagner et al., 2002).By contrast, lack of the indirect flight muscle-specific actin88F,which renders flies flightless, can only be rescued byexpression of one out of the five other actins, with the failureto substitute correlating with the extent of sequence differencebetween actin88F and the actin used to rescue (Fyrberg et al.,1998). The underlying mechanistic reasons for thesedifferences in the functional equivalence are unclear.

The goal of this work was to perform a single comprehensivestudy to compare the ability of all the actins from one speciesto incorporate into different actin structures, using the samemethodology throughout and analysing a large variety oftissues. At the same time, we tested the usefulness of thetransgenic fly lines we generated as tools to selectively labelsubsets of actin structures. To this end, we have expressed allsix actin genes in Drosophila as green fluorescent protein (GFP)fusion proteins using the UAS-Gal4 system (Brand andPerrimon, 1993) to drive expression in various tissues. Wefound that, with only a few exceptions, each actin wasefficiently incorporated into all of the different structuresformed by the endogenous actins that we analysed. The mostdrastic difference in the site of incorporation of the actins wasobserved in the sarcomeres of muscles. In contrast to some ofthe mammalian cell culture studies we found no large differencein incorporation between cytoplasmic and muscle-specificactins, and did not observe strong dominant-negative effects ofthe overexpression. We hope that in addition to aiding in theunderstanding of the effect of actin sequence variability on the

formation of actin structures, the tools presented here will proveuseful for subsequent studies on actin dynamics in Drosophila.

Materials and MethodsFly husbandryTransgenic lines of GFPactins were crossed to the following Gal4-drivers for tissue-specific expression: ptc-Gal4 (Hinz et al., 1994),mef2-Gal4 (Ranganayakulu et al., 1996), CY2-Gal4 (Queenan et al.,1997), nanos-Gal4 (Van Doren et al., 1998) and 24B-Gal4 (Brand andPerrimon, 1993). The UASp-GFPactin lines generated in this studyare available from the Bloomington Drorophila Stock Center(http://flystocks.bio.indiana.edu).

Test of flight abilityFlight ability was tested by comparing actin-expressing flies to fliescarrying the GFPactin but not the Gal4-driver transgene for theirability to fly up in a transparent cylindrical cage after being shaken tothe bottom: wild-type flies fly up to the top of the cage whereasflightless flies have to climb up the sides.

Cloning of GFPactin constructsActin gene sequences were amplified with specific primers in the 5�-and 3�-UTRs from genomic DNA [prepared as described previously(Huang et al., 2000)] and subcloned into pCR TOPOII. Using primersspecific for the coding sequences that added NotI and XbaI sites (ora BamHI site in the case of actin79B) the actin sequences were re-amplified and cloned into a pUASp(mGFP6) vector (Röper andBrown, 2003; Rørth, 1998). The GFP was fused to the actin N-terminally, with a short linker sequence of SSSAAA in between theGFP and the first methionine of the actin protein sequence. Allsequences were verified by sequencing.

Immunofluorescence and confocal microscopyEmbryos were collected on apple-juice agar plates at stage 14-15 ofdevelopment, and processed for immunofluorescence using standardprocedures. Ovaries were dissected from well-fed females andprocessed for fluorescence using standard procedures. Third instarlarvae were either imaged live, or opened, fixed in 4% formaldehydeand stained with phalloidin in PBT (PBS plus 0.5% bovine serumalbumin and 0.3% Triton X-100). Indirect flight muscles weredissected from well-fed 1- to 3-day-old adult flies, fixed in 4%formaldehyde and stained with phalloidin in PBT. Confocal imageswere obtained using a Radiance 2000 confocal microscope (Bio-Rad,Hemel Hempstead, UK). Confocal laser, iris and amplificationsettings in experiments comparing intensities of labelling were set toidentical values. Confocal pictures were assembled in AdobePhotoshop.

ResultsThe coding region of each of the six actin genes in Drosophilawas amplified by PCR and cloned (see Materials and Methodsfor details). Constructs were then generated containing themodified UASp promoter (Brand and Perrimon, 1993; Rørth,1998), the GFP coding sequence and actin protein codingsequence. GFP was fused to the N terminus of each actin, astagging at this end has been shown to be less disruptive forpolymerization in a study using His-tagged actin88F (Brault etal., 1999a). Also, the function of the widely used UAS-GPFactin5C (Verkhusha et al., 1999) confirms that tagging atthe N terminus allows tagged monomers to be incorporated

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into actin filaments. For each GFPactin construct, severalindependent transgenic lines were generated.

We then tested the ability of each GFPactin to beincorporated into a variety of the actin based structures formedby the endogenous actins in Drosophila: (1) branched networksand parallel bundles of actin filaments such as lamellipodia andfilopodia, which are easily seen in the embryonic epidermisand amnioserosa; (2) cortical actin and stress fibre-likestructures, found for instance in the ovarian follicle epithelium;(3) specialized actin structures found in the female germlinesuch as ring canals and actin cages; (4) highly ordered actin-myosin assemblies found in the sarcomeric structures ofembryonic, larval and adult muscles. To do this, we expressedeach GFPactin in the relevant tissue with the appropriate Gal4driver, and visualized GFP expression in fixed and livesamples. All GFPactins appeared to be expressed at similarlevels, judging by the brightness of the fluorescence andwestern blot analysis (data not shown). We also examinedwhether the expression of each GFPactin perturbed theendogenous actin structures by double-labelling withrhodamine-phalloidin to reveal the overall distribution offilamentous actin. Actin overexpression did not detectablyimpair normal filamentous actin assembly, because in alltissues analysed, the phalloidin-labelling in wild-type cells andthose expressing GFPactin was indistinguishable. In mostcases GFPactin overexpression did not interfere with cellularfunction, but the few exceptions that we noted are describedbelow.

Lamellipodia and filopodia in the embryonic epidermisand amnioserosaLamellipodia and filopodia are actin-based cellular extensionsimportant for cell-cell contact and cell migration (Jacinto andWolpert, 2001; Small et al., 2002; Svitkina et al., 2003). Actinfilaments are arranged in parallel bundles in filopodia andbranched networks in lamellipodia. A variety of accessoryproteins have been discovered that can determine which of thetwo structures is formed (Mejillano et al., 2004; Revenu et al.,2004), but the contribution of actins has not been examined. Inthe fly embryo, elaborate filopodia and lamellipodia are foundat the interface between the embryonic epidermis and theamnioserosa (Fig. 2A). The amnioserosa is an extraembryonictissue covering the dorsal region of the embryo, which iseventually displaced by the embryonic epidermis (Jacinto etal., 2002). The amnioserosa cells also have numerouslamellipodia and filopodia.

Expression of the GFPactins was driven in the embryonicepidermis using the patched-Gal4 driver (Hinz et al., 1994),leading to expression in segmentally repeated stripes within theepidermis and ‘patchy’ expression within the amnioserosa. Thetwo cytoplasmic GFPactins, actin 5C and 42A, and the muscle-specific actin88F highlighted the leading edge filopodia verystrongly compared with the overall cytoplasmic labelling (Fig.2B,C,G), with GFPactin88F showing the most strikingenrichment in the filopodia (Fig. 2G). The other threeGFPactins, actin57B, 79B and 87E, displayed a higher level ofcytoplasmic staining (Fig. 2D-F) compared to the amount inthe filopodia. GFPactin79B was the only actin that did notappear to be incorporated into lamellipodia and filopodiawithin the amnioserosa (Fig. 2E), whereas all other GFPactins

Journal of Cell Science 118 (17)

Fig. 2. Actin isoform incorporation into filopodia and lamellipodia.Using the ptc-Gal4 driver all six actins were expressed in theembryonic epidermis and amnioserosa, an extraembryonicmembrane covering the dorsal region of the embryo, which isdisplaced by the embryonic epidermis moving dorsally (Jacinto etal., 2002). (A) Diagram illustrating the contact between embryonicepidermis and amnioserosa during stage 14 of embryogenesis. Thebox indicates the approximate area of scanning shown in the panelsbelow. The row of epidermal cells contacting the amnioserosa (theleading edge cells) display numerous filopodia and somelamellipodia (highlighted by the staining with phalloidin in B�-G�).The amioserosa cells also have many lamellipodia and filopodiacontacting neighbouring cells. (B-G) Most actins strongly label theleading edge filopodia and F-actin-rich cellular protrusions withinthe amnioserosa. Only actin79B (E) did not appear to be stronglyincorporated into these but rather filled the cytoplasm moreuniformly.

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3941Comparison of Drosophila actins

labeled lamellipodia to varying degrees, with 42A and 88Fbeing the strongest (Fig. 2C,G). Of the two cytoplasmic actins,GFPactin42A appeared to be the one that was betterincorporated into filopodia and lamellipodia. Comparison ofthe phalloidin labelling of GFPactin-expressing and non-expressing cells showed that the overall distribution offilamentous actin was identical and that cell morphology wasnot altered.

Cortical actin and stress-fibre like actin arrangements inthe female germlineThe follicular epithelial cells, which surround the maturingoocyte and nurse cells, provided good examples of two otheractin structures: the cortical actin cytoskeleton and stress fibres(Fig. 3A). Cortical actin is the actin associated with the plasmamembrane and is thought to perform diverse functions, such asanchoring of transmembrane and peripheral membraneproteins, cell adhesion and endocytosis (Arpin et al., 1994;Bretscher, 1991; Schafer, 2002; Vasioukhin and Fuchs, 2001).

Stress fibres are particularly prominent in cells in culture thatare well spread on an extracellular matrix. They consist ofbundles of actin filaments spanning the cell that areinterspersed with myosin II and are thus thought to becontractile (Kolega et al., 1991). One of the few examples ofsimilar structures that can be found within Drosophila are theparallel arrays of actin fibres at the basal surface of the folliclecells. Like stress fibres, these fibres terminate at a membranestructure containing integrins (Bateman et al., 2001).

When we expressed GFPactins in the follicle epitheliumusing the CY2-Gal4 driver (Queenan et al., 1997), each actinwas incorporated into both structures, but with differingefficiency (Fig. 3). Actin87E showed especially strong corticalactin labelling (Fig. 3F), whereas actin79B was mostlycytoplasmic and only weakly labelled the cortex (Fig. 3E). Thefour other actins labelled the cell cortex at intermediate levels(Fig. 3B-D,G). Incorporation into the basal stress fibres wasstrongest for the cytoplasmic GFPactin42A (Fig. 3I), strong for5C, 87E and 88F (Fig. 3H,M,N), and only weak for 57B (Fig.3K). GFPactin79B very poorly incorporated into the basal actin

Fig. 3. Actin isoform incorporationinto cortical actin and stress-fibre-likeassemblies. Using the CY2-Gal4driver all six actins were ectopicallyexpressed in the follicular epitheliumduring oogenesis. (A) Diagramillustrating the level of the confocalsections in B-G� and H-N�.(B-G�) Confocal sections through thefollicle epithelium; the apical surfaceof the epithelium facing the oocyte isup, basal surface is down, as depictedin A. In the colour panels, GFPactinsare green, labelling with phalloidin isred (B-G), the individual GFPactinchannels are also shown as black andwhite images (B�-G�). The arrows inB,C,F,G indicate phalloidin-labellingof the muscle sheet surrounding theegg chambers, the arrowhead in Bindicates the strong phalloidinlabelling within the oocyte. Bothstructures were not labelled with theGFPactins as the CY2-Gal4 driver isonly expressed in the follicle cells.Different actins varied in the level oftheir incorporation into the apicalterminal web and microvilli [e.g.strong incorporation for actin5C (B�)and actin42A (C�)] and incorporationinto the cortical actin cytoskeletonlining the lateral sides of follicle cells[e.g. strong labelling for actin87E(F�)]. (H-N�) Confocal scans of abasal face-on view of the follicle cells(with the muscle sheath removed),showing the basal actin stress fibresas depicted in A. In the colour panels,GFPactins are green, labelling withphalloidin is red (H-N) and the individual GFPactin channels are shown as black and white images (H�-N�). Levels of incorporation into thebundles vary, with actin42A being highly concentrated (I�) and actin79B being only weakly incorporated (L�) into the fibres.

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fibres (Fig. 3L). For both actin structures present in folliclecells, the cortical actin and the stress fibre-like arrangements,the cytoplasmic actin42A appeared a better marker than thewidely used actin5C.

Specialized actin structures in the female germline: ringcanals and actin cagesWe next examined two actin structures within the femalegermline that are specializations of this particular tissue, butnonetheless related to actin-based structures in other tissues.Ring canals are stable cytoplasmic bridges betweenneighbouring germ cells that are formed from an arrestedcleavage furrow by addition of several actin-binding proteins

(Mahowald, 1971; Robinson et al., 1997; Sokol and Cooley,1999). At stage 10-11 of oogenesis, actin struts form ‘cages’around the nurse cell nuclei and are thought to hold these nucleiin place during the pumping of cytoplasmic content of thenurse cells into the oocyte (Guild et al., 1997). The struts arebuilt up of smaller overlapping bundles of actin filaments, eachof which resembles actin bundles in microvilli (DeRosier andTilney, 2000).

When expressed in the germline using the nanos-Gal4-VP16 driver (Van Doren et al., 1998), all GFPactinsstrongly labelled the ring canals within the germarium andearly egg chambers (Fig. 4A-F) and also at late stages ofoogenesis (some ring canals at these stages are visible in Fig.4I-O). All actins except actin79B were incorporated into theactin struts around nurse cell nuclei (compare Fig. 4M withI,K,L,N,O).

Overexpression of two of the GFPactins interfered withnormal germline development. Expression of eitherGFPactin5C or 57B caused a failure in formation of germlinecysts with the correct number of germ cells in a fraction of

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Fig. 4. Actin isoform incorporation into ringcanals and actin cages. Using the nanosVP16-Gal4 driver all six actins were expressed in thegermline during oogenesis. (A-F�) Confocalsections through germaria of GFPactin-expressing ovarioles showing actinincorporation into ring canals. In the colourpanels, GFPactins are green, labelling withphalloidin is red (A-F) and the individualGFPactin channels are shown as black andwhite images (A�-F�). Arrows in A�-F� indicateindividual ring canals. (G,H) High levels ofactin overexpression can disrupt cyst formationduring oogenesis. Overexpression of eitheractin5C or actin57B in the germline resulted ina fraction of ovarioles failing to form cystscontaining 16 cells. The actins localized to cellcortices and ring canals, but these ring canalsappeared to contain excess actin and cystocyteswere multinucleate (G; GFPactin is shown ingreen, phalloidin in red and DNA labelled withTOTO-3 is blue; the arrow indicates a ringcanal). Despite the reduced cell number, severalstage 10-11 egg chambers showed amorphologically distinct oocyte (H; GFPactin isin green, phalloidin in red; the numbers indicatethe three nurse cells of this egg chamber, theasterisk denotes the oocyte). (I-O�) Confocalsections through the nurse cell part of a stage10B egg chamber. Egg chambers at this stage,prior to dumping of their cytoplasmic contentsinto the oocyte, develop a specialized array ofactin filaments, ‘cages’, around each nurse cellnucleus. GFPactins are incorporated to varyingdegrees into these actin cages, e.g. actin87Ebeing incorporated very strongly (N,N�) andactin79B only being incorporated at a very lowlevel (M,M�). In the colour panels, GFPactinsare green, labelling with phalloidin is red (I-O)and the individual GFPactin channels are shownas black and white images (I�-O�).

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ovarioles (Fig. 4C,G,H), indicating that the mitotic divisionsgenerating the germline cysts were perturbed. Germ cells weremultinucleate and ring canals appeared to contain excess actin(Fig. 4G). Nonetheless, late stage egg chambers could be foundthat contained a morphologically identifiable oocyte despitehaving too few germ cells (Fig. 4H, asterisk).

Sarcomeric actin assemblies in larval musclesOne of the most prominent actin-based structures in animals isthe sarcomeric assembly found in striated muscles. In a nearlycrystalline array, actin-based thin filaments and myosin-basedthick filaments are arranged in a hexagonal lattice. The actinfilaments originate and overlap in the Z-lines, where multipleactin binding and capping proteins help to anchor the barbedends of actin filaments (Clark et al., 2002). The Z-lines are alsoanchored to the plasma membrane where the ends of musclesare linked to the tendon matrix on the outside of the musclevia integrin junctions forming an enlarged ‘modified’ Z-line(Reedy and Beall, 1993b). Phalloidin staining is stronglyenriched in Z-lines, indicating a concentration of filamentousactin.

GFPactins were expressed in muscles using the mef2-Gal4

driver (Hinz et al., 1994). In the larval visceral (Fig. 5A) andbody wall muscles (Fig. 5B,C) all actins were incorporated intothe striated sarcomeric structure (Fig. 5A, compare GFPactinto phalloidin labelling). No difference in the overall efficiencyof incorporation was detected between cytoplasmic andmuscle-specific actins (Fig. 5A-C, compare a,b with c-f). Also,at the light-microscopic level, muscle architecture or functionin larvae was not disrupted (see phalloidin labelling in Fig.5A). This is in strong contrast to mammalian muscle cells inculture, in which overexpression of cytoplasmic actins led tostrong dominant negative effects (von Arx et al., 1995). Thedistribution of both fly cytoplasmic actins (5C and 42A) wasindistinguishable from the distribution of F-actin (Fig. 5A,aand b), indicating that the majority of GFPactin wasincorporated into the sarcomeres.

We next analysed more closely how the different actins wereincorporated into striated muscles (Fig. 5B). All but one actinisoform appeared to be incorporated into the thin filamentsalong their entire length; actin79B was slightly more enrichedin the Z-lines compared to the other actins (Fig. 5B,d).GFPactin88F expressed in larval muscles appeared to bespecifically excluded from Z-lines, but strongly presentthroughout the rest of the thin filaments (Fig. 5B,f).

Fig. 5. Actin isoform incorporation into sarcomeric assemblies in larval muscles. Using the mef2-Gal4 driver all six actins were expressed inthe visceral and body wall musculature of third larval instar. (A) The incorporation patterns for each actin into the visceral muscles. Thecoloured panels are the merged images of the GFP channel (green and left column) and phalloidin (red and middle column). (B) Lateral viewsof the individual GFPactins in a single longitudinal third instar body wall muscle, with a diagram indicating the sarcomeric localization on theright (Z indicates Z-lines). Note that GFPactin88F is excluded from Z-lines. (C) The muscle ends that interdigitate with the tendon cells (notvisible) within the epidermis to anchor the muscle. This end of the sarcomeric structure of a muscle is a modified and enlarged Z-line (Reedyand Beall, 1993b).

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Highly ordered sarcomeric actin assemblies in the adultindirect flight musclesThe muscles that move the wings of adult flies and enable flight,the indirect flight muscles, reside within the thorax. Eachindirect flight muscle is a single multinucleate cell containingmany myofibrils with especially regular sarcomeres (Reedy andBeall, 1993a). This highly ordered structure allows for the high-frequency contractions that are necessary to power the beatingwing and thus enable flight (Bate, 1993). The major actinisoform expressed in the indirect flight muscles is actin88F(Fyrberg et al., 1983). Indirect flight muscles appear especiallysensitive to interference with the sarcomeric components, andmost manipulations result in an inability to fly (Brault et al.,1999a; Brault et al., 1999b; Fyrberg et al., 1998).

Expression of GFPactins in the adult indirect flight muscleshowed the most striking differences in incorporation, and alsorevealed unexpected patterns of actin incorporation (Fig. 6).Independent of the actin isoform expressed, all flight musclesshowed a core of elevated levels of GFPactin (Fig. 6A). As seenin Fig. 6, the size of the core varied between individual fliesanalysed, but none of the specimens showed homogeneouslabelling of the thin filaments. The core staining must representstronger incorporation into the forming sarcomeres during earlypupal stages of indirect flight muscle assembly. The individualsarcomeres grow continuously in length and diameter duringpupal development, with thin filaments growing in length andlayers of thin filaments being added around the periphery(Mardahl-Dumesnil and Fowler, 2001) (see diagram in Fig. 6C).The stronger incorporation into the core was not specific to thelevel of GFPactin production driven by mef2-Gal4, as two otherdrivers, CY2 and 24B, produced similar patterns but areexpressed at different levels (Fig. 6B and data not shown). Alikely explanation for the labelling of the core is that there is atemporal change in the ratio of the GFPactin to endogenousactin. For example, a large increase in the expression of

endogenous actin88F at the end of flight muscle assembly coulddilute the GFPactin. Regardless of the cause of the corelabelling, our results highlight a difference between the Z-lines,which homogeneously incorporated the GFPactin, and the thinfilaments, which did not, even though the Z-lines and thinfilaments are assembled at the same time (Reedy and Beall,1993a).

Apart from the unexpected enrichment of ectopic GFPactinin the core structure, incorporation of different actins differedmost within the Z-line. The most extreme cases were actin79B,which was highly enriched in the Z-line, and actin88F, whichwas excluded from Z-lines. The exclusion of actin88F from Z-lines was the more surprising, as actin88F is the primary actinisoform expressed in these indirect flight muscles (Fyrberg etal., 1983). The exclusion of GFPactin88F from Z-lines wasfound in all muscles analysed: the larval visceral muscles (Fig.5), the larval body wall muscles (Fig. 5), the adult indirectflight muscles (Fig. 6), as well as the adult direct flight musclesand adult leg muscles (data not shown).

The indirect flight muscle was the only muscle in which thefunction was affected by overexpression of GFPactins.Expression of any of the muscle-specific or cytoplasmic actinsin this tissue led to flightless adults that were otherwise healthyand fertile (data not shown). This is most probably due to animbalance in the relative amounts of actin and myosin (Beallet al., 1989). In some cases the disruption of the flight musclestructure could be observed in dissected flight muscles fibres(Fig. 6D for GFPactin5C, arrows). Nonetheless, the overallassembly of thin filaments into sarcomeres appearedindistinguishable from wild-type as judged by phalloidin-labelling (Fig. 6A, phalloidin).

A mutant actin, actin79BR291H, exclusively in Z-linesIn the process of generating the GFPactin-transgenic flies, we

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Fig. 6. Actin isoform incorporation intosarcomeric assemblies in adult indirectflight muscles. (A) Using the mef2-Gal4driver all six actins were expressed in theadult indirect flight muscles. A singlemuscle myofibril of an adult indirect flightmuscle is shown for each actin. GFP isshown in the left column and in green in thecolour images, and phalloidin is shown inthe middle column and in red in the colourimages. Note that, apart from the Z-lines,GFPactins appear to be more stronglyincorporated into a ‘core’ structure of theindirect flight muscle. (B) The ‘core’incorporation pattern of GFPactins ispreserved when actins are expressed withother Gal4-drivers that have different levelsand timing of expression; shown areGFPactin5C and GFPactin42A using CY2-Gal4, and GFPactin88F using 24B-Gal4(colour panels show GFP in green andphalloidin in red and the black and whitepanels show GFP alone). (C) Schematic showing the continuous assembly of indirect flight muscle myofibrils during pupal stages (Reedy andBeall, 1993a). A section through thin filaments of a sarcomere is shown and a cross section of an individual sarcomere between two Z-lines.The darker the colour, the earlier the corresponding thin filaments have been assembled. (D) Disorganisation of the indirect flight musclescaused by GFPactin overexpression. Overview of a field of indirect flight muscle fibres expressing actin5C. Note that some fibres appear to splitand fuse irregularly (arrows), a feature not observed in wild-type fibres.

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realized that one expression construct of actin79B harboured apoint mutation in a highly conserved residue: R291 waschanged into a histidine (Fig. 7A). Expressed in fly muscles,this mutant, actin79BR291H, was almost exclusivelyincorporated into the Z-lines of sarcomeres, with very lowlevels in the rest of the thin filaments. This Z-line-specificincorporation was found in all muscle types analysed: larvalvisceral muscles (Fig. 7B), larval body wall muscles (Fig. 7Cand D), adult indirect flight muscles (Fig. 7E,F), adult directflight muscles and adult leg muscles (data not shown).Similarly to wild-type actin79B, actin79BR291H was notincorporated into filopodia and lamellipodia in the amnioserosa(Fig. 7G), and did not label the cortex of follicular epithelial

cells, though it labelled the apical microvilli (Fig. 7H).However, in contrast to the wild-type actin79B, the mutantstrongly labelled the basal actin stress fibres in the follicle cells(Fig. 7I).

Analysis of chimerae between actin79BR291H and actin88FTo address the molecular basis of the specific exclusion ofactin88F from Z-lines, and the preferential incorporation ofactin79BR291H into Z-lines, we constructed chimeric GFP-fusion proteins. Comparing the position of the mutation inactin79BR291H with the crystal structure of actin (Kabsch et al.,1990), it appeared to be in a position that might affect packingof monomers into the filament. Overall, actin79BR291H andactin88F differ from each other in 12 positions at the aminoacid level (see Fig. 1A). Four of the changes are clustered inthe very N terminus, the most divergent region for all actinproteins (see Fig. 1A). The other differences are spread overthe length of the protein. We therefore exchanged the first 149amino acids of actin79BR291H with those of actin88F and viceversa and fused them to GFP as done for the others (Fig. 8).Expression analysis in larval and adult muscles revealed thatlocalization within the sarcomeric structure was determined bythe C-terminal half. This half contains the R291H mutation andthere are only two residues in this half that are unique toactin88F: F170, which is a Y in all other actins, and S298,which is variably I, N, or T in the others.

DiscussionIn this study we set out to address whether the small variationin amino acid sequence found in the six different actins ofDrosophila affected their ability to associate with certain actinstructures formed by endogenous actins. Actins were expressed

Fig. 7. A point-mutant form of GFPactin79B, actin79BR291H, isspecifically incorporated only into Z-lines. (A) In the process ofcloning actin79B we also recovered and expressed a point-mutantversion of the protein that leads to an R-H amino acid exchange inposition 291 of the protein. (B-F) This single amino acid change hadstriking consequences on the localization of actin79BR291H inmuscles: the protein is nearly exclusively incorporated into Z-lines(most dramatically seen in the indirect flight muscles; E,F).(B-F) Incorporation into (B) larval visceral muscles, (C,D) thirdinstar larval body wall muscles (D shows the modified Z-line at thetendon ends of the muscles) and (E-F) indirect flight muscles (Fshows the modified Z-line at the muscle end). Analysis in epithelialtissues showed that actin79BR291H is not enriched in the filopodia ofthe leading edge or the amnioserosa in embryos (G shows GFPactin;G�, phalloidin). (H-I�) Within the follicle epithelium, actin79BR291H

was only weakly found in the cell cortex (H,H�), but wasincorporated into apical microvilli and the basal actin bundles (I,I�).In all colour panels GFPactins is shown in green, labelling withphalloidin is in red. All black and white panels show either GFPactinor phalloidin single channels as indicated on each panel.

Fig. 8. Chimera analysis of actin79BR291H and GFPactin88F, twoproteins specifically incorporated into or excluded from Z-lines. Todetermine, whether the single amino acid change in actin79BR291H

determined its preference for Z-lines, and to determine whichresidues in GFPactin88F prevent its incorporation into Z-lines, weexchanged the N-terminal 149 amino acid between the two proteins.(A-D) The C-terminal half of GFPactin88F excludes the chimericprotein from Z-lines (A,C), whereas the C terminus of actin79BR291H

brings the N-terminal half of GFPactin88F into Z-lines (B,D).(A,B) GFPactin in third instar larval body wall muscles, (C,C�,D,D�)adult indirect flight muscles (green in C and D); the phalloidinchannel is shown in C and D (red) and in C��and D��.

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as GFP fusion proteins and expression was driven in varioustissues throughout development. Previous studies analysing theequivalence of actin paralogues in either mammalian tissueculture or Drosophila produced conflicting results. In our studywe found that in most actin structures analysed, the differencesin the efficiency of incorporation were smaller than weexpected (see Table 1). Nonetheless, the different actinsbehaved far from identically. Three out of four muscle-specificactins, 57B, 87E and 88F, were incorporated very efficientlyinto all cytoplasmic structures analysed and the fourth, 79B,was incorporated into some cytoplasmic structures. Also, bothcytoplasmic actins were incorporated into sarcomeres ofembryonic, larval and adult muscles, without causing anyapparent deleterious effects. This is in contrast to studies onmammalian cells in culture, where overexpression ofcytoplasmic actins in muscle cells led to strong dominant-negative effects, disruption of the thin filament system of thesarcomere and induction of excess filopodia around the cellcircumference (von Arx et al., 1995). In these studies,cytoplasmic actins were not incorporated into sarcomeres orcontractile fibres (Mounier et al., 1997). This difference couldbe due to the closeness of fly actin sequences to each othercompared to the larger sequence difference betweenmammalian cytoplasmic and muscle actins (Fig. 1A,B).Although fly muscle-specific actins show a series of conservedmuscle-specific residues when compared to the fly cytoplasmicactins, these residues differ from muscle-specific residuesfound in vertebrate muscle actins (Fig. 1A, compare the greenand orange boxes). Nonetheless, fly muscle actins formsarcomeric structures that appear indistinguishable frommammalian sarcomeres, and contain the same sets of accessoryproteins (Clark et al., 2002), thus the higher conservation ofactin sequence in the fly does not change the ability of theseactins to form sarcomeric structures. Overall there appears tobe no general difference in the structures that can be formedby vertebrate and fly actins.

Taken together, this study compares, for the first time, theability of all actin paralogues found in one species to beincorporated into a large variety of actin structures in vivo. Ouraim was to better understand the extent to which the six actinproteins found in Drosophila are functionally equivalent. Theability of fly actins to integrate into most actin structures andtheir sequence conservation suggest that the regulation ofexpression rather than a divergence in function of individualproteins is key to understanding why this multigene familymaintained that many members through evolution. But thisexplanation is likely to be too simplistic, as it does not accountfor the following factors. Firstly, different fly actin proteinsequences cannot always substitute for another actin (Fyrberg

et al., 1998). Secondly, in this study we observed differencesin the efficiency of different actins to be incorporated intodifferent structures and in a few examples inability of certainactins to be incorporated into an actin structure: actin79B wasnot incorporated into filopodia or lamellipodia (Fig. 2), andactin88F was excluded from Z-lines in muscles (Figs 5 and 6).Thirdly, our experiments do not address whether each actin isable to form each of the actin structures by itself, because wehave just tested their ability to become incorporated intostructures formed by the actins normally present in each celltype. These results suggest that the main difference betweenactin paralogues in flies could lie in the expression control, butthat in addition, tissue- or actin structure-specific adaptation ofindividual actins evolved, so that the present actin paraloguescannot unequivocally substitute for each other.

How could the primary actin protein sequence lead to thepreferable incorporation of one actin over another for a singlefilament within an actin structure? It could be explained by theinability of two or more actins to co-polymerize. However, invivo and in vitro studies in mammals have shown that even themore divergent muscle and non-muscle actins can be found co-polymerized within one filament (Drew et al., 1991; Mounieret al., 1997), therefore, it appears very likely that this wouldalso be the case in Drosophila and thus preclude‘immiscibility’ of actins as a cause of segregation ofparalogues. Alternatively, actin-binding proteins that supportthe formation of certain structures could show a preference forcertain actins. An example of such a preference has beendescribed in the protein beta cap73 that preferentially binds to�-actin but not �-actin and probably links �-actin to ezrin, withwhich it forms a complex (Shuster et al., 1996). Suchpreferential binding of accessory proteins could explain thestriking difference of incorporation into Z-lines that weobserved for actin88F and the mutant actin79BR291H. Theanalysis in various tissues showed that actin79BR291H was notefficiently incorporated into filamentous structures. The strongincorporation into Z-lines could be due to binding to a Z-line-specific actin-binding protein such as �-actinin. This could alsoexplain the incorporation of the mutant actin into the basalstress fibres, as they also contain �-actinin (Otey and Carpen,2004). Conversely, the exclusion of GFPactin88F could be dueto its inability to associate with certain Z-line-specific actin-binding proteins.

The exclusion of actin88F from Z-lines in the indirect flightmuscles was particularly surprising, because actin88F is theprimary actin isoform expressed in these muscles (Fyrberg etal., 1983). Therefore, this result suggests that the Z-line actinin the indirect flight muscles is not composed of actin88F, butinstead must normally be made of one or more of the other

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Table 1. Incorporation efficiency of GFPactins into actin structures in DrosophilaEndogenous expression Filopodia/ Basal Larval and

(see Fig. 1C) lamellipodia Cortical actin stress fibres Ring canals Actin struts adult muscles Z-lines

Actin 5C Cytoplasmic, ubiquitous ++/+ + ++ ++ + ++ +Actin 42A Cytoplasmic, embryo, larva, pupa ++++/++++ +++ ++++ +++ +++ ++ +Actin 57B Muscle, embryo, larva, pupa +/+ + + + + +++ +Actin 79B Muscle, pupa, adult –/– +/– +/– + +/– ++ ++Actin79B- – –/– – ++ + +/– + ++++

(R291H)Actin 87E Muscle, embryo, larva, pupa, adult ++/++ ++++ +++ +++ +++ +++ +Actin 88F Muscle, pupa, adult ++++/++++ + ++ ++ + + –

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actins. This could also explain why the other GFPactinslabelled the whole of the Z-line but only the core of the thinfilaments: a late burst of actin88F expression may dilute outGFPactin incorporation into thin filaments, but not the Z-line.The alternative explanation is that actin88F is normally foundin the Z-lines, but the GFP-tag blocks its localisation to Z-lines.This would indicate that the recruitment of actin88F to the Z-lines occurs differently than all the other actins, since the GFP-tag did not interfere with their Z-line association. The effect ofthe GFP on actin88F would also have to be a long-rangeconformational change, since the inability of GFPactin88F togo to Z-lines mapped to the C terminus, rather than the Nterminus, which contains the GFP tag.

A fortuitous mutation in actin79B, R291H, converted it intoa Z-line-specific actin. Comparing this mutant with 88F, wemapped the residues responsible for the exclusion of actin88Fto one or both of two residues in the C-terminal half, F170 andS298. Both of these residues are within subdomain 3 of theactin monomer, which is part of the barbed end. One of theactin88F-specific residues, S298 (T297 in human �-actin), isless likely to cause Z-line exclusion, because it is variablebetween the different actins and is buried in the structure of theactin monomer (Kabsch et al., 1990). The other residue, F170,is usually a tyrosine (Y169 in human �-actin), and, like R291,is exposed on the surface of the structure. F170 and R291 areboth in regions that form contacts with other actin subunitsduring filament formation (Holmes et al., 1990). The lysineadjacent to R291 has been shown to be less reactive upon actinpolymerization, indicating that it is buried in the filament(Holmes et al., 1990), thus residues in this region potentiallyform stabilizing contacts between actin monomers. Thedifference in localisation between actin88F and the mutantactin79BR291H might be explained if we hypothesize that someF-actin in the Z-lines is present as very short filaments. Themutant actin79B could cap the ends of these filaments withoutbeing too detrimental, and, conversely, perhaps actin88Fcannot associate with a barbed end capping protein at the Z-lines, so it does not accumulate.

Both residues, F170 and R291, are also part of the bindingsite for profilin (Schutt et al., 1993). The equivalent residue toR291 in bovine �-actin (R290), is part of the primary contactsite between profilin and bovine �-actin (Schutt et al., 1993).Profilin binds actin monomers, catalyses the nucleotideexchange on actin monomers and delivers them forpolymerization to free barbed ends of actin filaments(Paavilainen et al., 2004). Binding sites for other actin-bindingproteins are distinct from these specific residues. For example,the interaction of actin-binding calponin-homology domains,like those in the Z-line-specific protein �-actinin, with actinfilaments involves the outside of the filaments and subdomain1 of the actin monomer (Moores et al., 2000; Sutherland-Smithet al., 2003). Thus, either a reduction in the ability to formfilaments or reduced binding to profilin interaction may explainwhy actin79BR291H was not easily incorporated intocytoplasmic actin structures such as filopodia, lamellipodia andcortical actin.

GFPactins as tools to visualize actin structuresAs well as allowing an insight into the basis of actin diversity,the GFPactins are valuable tools to study or highlight actin-based

structures in a live organism. We would recommend using thefollowing GFPactins to label specific structures (see also Table1): actin 42A or 88F for cell cortices, filopodia and lamellipodiain the embryonic epidermis and amnioserosa; actin87E for celloutlines and actin42A for basal fibres in the follicularepithelium; actin 42A or 87E for ring canals or actin struts inthe germline; actin 57B or 87E for sarcomeres in muscles. It isworth mentioning that a number of the newly generated fusionproteins, and in particular the second cytoplasmic actin42A,were in most cases a better marker for actin structures, i.e. bettersignal to noise ratio, in many cell types than the commonly usedGFPactin5C (Verkhusha et al., 1999).

The authors would like to thank John Overton for the injection ofconstructs into fly embryos. We would also like to thank the followingpeople for comments and critical reading of the manuscript: IsabelleDelon, Danelle Devenport, Sean Munro, Maithreyi Narasimha, GuyTanentzapf. This work was supported by grants from the WellcomeTrust to N.H.B. (31315 and 69943), and K.R. was supported by aLong Term Fellowship from the Human Frontier Science ProgrammeOrganisation and a BBSRC David Phillips Fellowship.

ReferencesArpin, M., Algrain, M. and Louvard, D. (1994). Membrane-actin

microfilament connections: an increasing diversity of players related to band4.1. Curr. Opin. Cell Biol. 6, 136-141.

Bassell, G. J., Zhang, H., Byrd, A. L., Femino, A. M., Singer, R. H., Taneja,K. L., Lifshitz, L. M., Herman, I. M. and Kosik, K. S. (1998). Sorting ofbeta-actin mRNA and protein to neurites and growth cones in culture. J.Neurosci. 18, 251-265.

Bate, M. (1993). The mesoderm and its derivatives. In The Development ofDrosophila Melanogaster (ed. M. Bate and A. Martinez-Arias), pp. 1013-1090. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.

Bateman, J., Reddy, R. S., Saito, H. and Van Vactor, D. (2001). The receptortyrosine phosphatase Dlar and integrins organize actin filaments in theDrosophila follicular epithelium. Curr. Biol. 11, 1317-1327.

Beall, C. J., Sepanski, M. A. and Fyrberg, E. A. (1989). Genetic dissectionof Drosophila myofibril formation: effects of actin and myosin heavy chainnull alleles. Genes Dev. 3, 131-140.

Brand, A. H. and Perrimon, N. (1993). Targeted gene expression as a meansof altering cell fates and generating dominant phenotypes. Development 118,401-415.

Brault, V., Reedy, M. C., Sauder, U., Kammerer, R. A., Aebi, U. andSchoenenberger, C. (1999a). Substitution of flight muscle-specific actin byhuman (beta)-cytoplasmic actin in the indirect flight muscle of Drosophila.J. Cell Sci. 112, 3627-3639.

Brault, V., Sauder, U., Reedy, M. C., Aebi, U. and Schoenenberger, C. A.(1999b). Differential epitope tagging of actin in transformed Drosophilaproduces distinct effects on myofibril assembly and function of the indirectflight muscle. Mol. Biol. Cell 10, 135-149.

Bretscher, A. (1991). Microfilament structure and function in the corticalcytoskeleton. Annu. Rev. Cell Biol. 7, 337-374.

Clark, K. A., McElhinny, A. S., Beckerle, M. C. and Gregorio, C. C.(2002). Striated muscle cytoarchitecture: an intricate web of form andfunction. Annu. Rev. Cell Dev. Biol. 18, 637-706.

DeNofrio, D., Hoock, T. C. and Herman, I. M. (1989). Functional sorting ofactin isoforms in microvascular pericytes. J. Cell Biol. 109, 191-202.

DeRosier, D. J. and Tilney, L. G. (2000). F-actin bundles are derivatives ofmicrovilli: What does this tell us about how bundles might form? J. CellBiol. 148, 1-6.

Drew, J. S., Moos, C. and Murphy, R. A. (1991). Localization of isoactinsin isolated smooth muscle thin filaments by double gold immunolabeling.Am. J. Physiol. 260, C1332-C1340.

Fyrberg, E. A., Mahaffey, J. W., Bond, B. J. and Davidson, N. (1983).Transcripts of the six Drosophila actin genes accumulate in a stage- andtissue-specific manner. Cell 33, 115-123.

Fyrberg, E. A., Fyrberg, C. C., Biggs, J. R., Saville, D., Beall, C. J. andKetchum, A. (1998). Functional nonequivalence of Drosophila actinisoforms. Biochem. Genet. 36, 271-287.

Jour

nal o

f Cel

l Sci

ence

Page 12: Contribution of sequence variation in Drosophila actins to ... · Introduction Actin is one of the most abundant and highly conserved proteins in eukaryotes (Sheterline et al., 1999)

3948

Guild, G. M., Connelly, P. S., Shaw, M. K. and Tilney, L. G. (1997). Actinfilament cables in Drosophila nurse cells are composed of modules that slidepassively past one another during dumping. J. Cell Biol. 138, 783-797.

Hill, M. A. and Gunning, P. (1993). Beta and gamma actin mRNAs aredifferentially located within myoblasts. J. Cell Biol. 122, 825-832.

Hinz, U., Giebel, B. and Campos-Ortega, J. A. (1994). The basic-helix-loop-helix domain of Drosophila lethal of scute protein is sufficient for proneuralfunction and activates neurogenic genes. Cell 76, 77-87.

Holmes, K. C., Popp, D., Gebhard, W. and Kabsch, W. (1990). Atomicmodel of the actin filament. Nature 347, 44-49.

Hoock, T. C., Newcomb, P. M. and Herman, I. M. (1991). Beta actin andits mRNA are localized at the plasma membrane and the regions of movingcytoplasm during the cellular response to injury. J. Cell Biol. 112, 653-664.

Huang, A. M., Rehm, E. J. and Rubin, G. M. (2000). Recovery of DNAsequences flanking P-element insertions: Inverse PCR and plasmid recue. InDrosophila Protocols (ed. W. Sullivan, M. Ashburner and R. S. Hawley),pp. 429-437. Cold Spring Harbor, NY: Cold Spring Harbor LaboratoryPress.

Jacinto, A. and Wolpert, L. (2001). Filopodia. Curr. Biol. 11, R634.Jacinto, A., Woolner, S. and Martin, P. (2002). Dynamic analysis of dorsal

closure in Drosophila: from genetics to cell biology. Dev. Cell 3, 9-19.Kabsch, W., Mannherz, H. G., Suck, D., Pai, E. F. and Holmes, K. C.

(1990). Atomic structure of the actin: DNase I complex. Nature 347, 37-44.Kislauskis, E. H., Zhu, X. and Singer, R. H. (1994). Sequences responsible

for intracellular localization of beta-actin messenger RNA also affect cellphenotype. J. Cell Biol. 127, 441-451.

Kolega, J., Janson, L. W. and Taylor, D. L. (1991). The role of solation-contraction coupling in regulating stress fiber dynamics in nonmuscle cells.J. Cell Biol. 114, 993-1003.

Mahowald, A. P. (1971). The formation of ring canals by cell furrows inDrosophila. Z. Zellforsch. Mikrosk. Anat. 118, 162-167.

Mardahl-Dumesnil, M. and Fowler, V. M. (2001). Thin filaments elongatefrom their pointed ends during myofibril assembly in Drosophila indirectflight muscle. J. Cell Biol. 155, 1043-1053.

McKenna, N., Meigs, J. B. and Wang, Y. L. (1985). Identical distribution offluorescently labelled brain and muscle actins in living cardiac fibroblastsand myocytes. J. Cell Biol. 100, 292-296.

Mejillano, M. R., Kojima, S., Applewhite, D. A., Gertler, F. B., Svitkina,T. M. and Borisy, G. G. (2004). Lamellipodial versus filopodial mode ofthe actin nanomachinery: pivotal role of the filament barbed end. Cell 118,363-373.

Meyer, A. and Van De Peer, Y. (2003). Genome Evolution: Gene and GenomeDuplications and the Origin of Novel Gene Functions. London: KluwerAcademic Publishers.

Moores, C. A., Keep, N. H. and Kendrick-Jones, J. (2000). Structure of theutrophin actin-binding domain bound to F-actin reveals binding by aninduced fit mechanism. J. Mol. Biol. 297, 465-480.

Mounier, N., Perriard, J. C., Gabbiani, G. and Chaponnier, C. (1997).Transfected muscle and non-muscle actins are differentially sorted bycultured smooth muscle and non-muscle cells. J. Cell Sci. 110, 839-846.

Nongthomba, U., Pasalodos-Sanchez, S., Clark, S., Clayton, J. D. andSparrow, J. C. (2001). Expression and function of the Drosophila ACT88Factin isoform is not restricted to the indirect flight muscles. J. Muscle Res.Cell Motil. 22, 111-119.

Otey, C. A. and Carpen, O. (2004). Alpha-actinin revisited: a fresh look atan old player. Cell Motil. Cytoskeleton 58, 104-111.

Paavilainen, V. O., Bertling, E., Falck, S. and Lappalainen, P. (2004).Regulation of cytoskeletal dynamics by actin-monomer-binding proteins.Trends Cell Biol. 14, 386-394.

Queenan, A. M., Ghabrial, A. and Schupbach, T. (1997). Ectopic activation

of torpedo/Egfr, a Drosophila receptor tyrosine kinase, dorsalizes both theeggshell and the embryo. Development 124, 3871-3880.

Ranganayakulu, G., Schulz, R. A. and Olson, E. N. (1996). Winglesssignaling induces nautilus expression in the ventral mesoderm of theDrosophila embryo. Dev. Biol. 176, 143-148.

Reedy, M. C. and Beall, C. (1993a). Ultrastructure of developing flightmuscle in Drosophila. I. Assembly of myofibrils. Dev. Biol. 160, 443-465.

Reedy, M. C. and Beall, C. (1993b). Ultrastructure of developing flightmuscle in Drosophila. II. Formation of the myotendon junction. Dev. Biol.160, 466-479.

Revenu, C., Athman, R., Robine, S. and Louvard, D. (2004). The co-workers of actin filaments: from cell structures to signals. Nat. Rev. Mol.Cell Biol. 5, 635-646.

Robinson, D. N., Smith-Leiker, T. A., Sokol, N. S., Hudson, A. M. andCooley, L. (1997). Formation of the Drosophila ovarian ring canal inner rimdepends on cheerio. Genetics 145, 1063-1072.

Röper, K. and Brown, N. H. (2003). Maintaining epithelial integrity: afunction for gigantic spectraplakin isoforms in adherens junctions. J. CellBiol. 162, 1305-1315.

Rørth, P. (1998). Gal4 in the Drosophila female germline. Mech. Dev. 78, 113-118.

Schafer, D. A. (2002). Coupling actin dynamics and membrane dynamicsduring endocytosis. Curr. Opin. Cell Biol. 14, 76-81.

Schutt, C. E., Myslik, J. C., Rozycki, M. D., Goonesekere, N. C. andLindberg, U. (1993). The structure of crystalline profilin-beta-actin. Nature365, 810-816.

Sheterline, P., Clayton, J. and Sparrow, J. C. (1999). Protein Profile: Actin.Oxford, UK: Oxford University Press.

Shuster, C. B., Lin, A. Y., Nayak, R. and Herman, I. M. (1996). Beta cap73:a novel beta actin-specific binding protein. Cell Motil. Cytoskeleton 35, 175-187.

Small, J. V., Stradal, T., Vignal, E. and Rottner, K. (2002). Thelamellipodium: where motility begins. Trends Cell Biol. 12, 112-120.

Sokol, N. S. and Cooley, L. (1999). Drosophila filamin encoded by the cheeriolocus is a component of ovarian ring canals. Curr. Biol. 9, 1221-1230.

Song, J., Worth, N. F., Rolfe, B. E., Campbell, G. R. and Campbell, J. H.(2000). Heterogeneous distribution of isoactins in cultured vascular smoothmuscle cells does not reflect segregation of contractile and cytoskeletaldomains. J. Histochem. Cytochem. 48, 1441-1452.

Sutherland-Smith, A. J., Moores, C. A., Norwood, F. L., Hatch, V., Craig,R., Kendrick-Jones, J. and Lehman, W. (2003). An atomic model for actinbinding by the CH domains and spectrin-repeat modules of utrophin anddystrophin. J. Mol. Biol. 329, 15-33.

Svitkina, T. M., Bulanova, E. A., Chaga, O. Y., Vignjevic, D. M., Kojima,S., Vasiliev, J. M. and Borisy, G. G. (2003). Mechanism of filopodiainitiation by reorganization of a dendritic network. J. Cell Biol. 160, 409-421.

Van Doren, M., Williamson, A. L. and Lehmann, R. (1998). Regulation ofzygotic gene expression in Drosophila primordial germ cells. Curr. Biol. 8,243-246.

Vasioukhin, V. and Fuchs, E. (2001). Actin dynamics and cell-cell adhesionin epithelia. Curr. Opin. Cell Biol. 13, 76-84.

Verkhusha, V. V., Tsukita, S. and Oda, H. (1999). Actin dynamics inlamellipodia of migrating border cells in the Drosophila ovary revealed bya GFP-actin fusion protein. FEBS Lett. 445, 395-401.

von Arx, P., Bantle, S., Soldati, T. and Perriard, J. C. (1995). Dominantnegative effect of cytoplasmic actin isoproteins on cardiomyocytecytoarchitecture and function. J. Cell Biol. 131, 1759-1773.

Wagner, C. R., Mahowald, A. P. and Miller, K. G. (2002). One of the twocytoplasmic actin isoforms in Drosophila is essential. Proc. Natl. Acad. Sci.USA 99, 8037-8042.

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