comparative phylogeography of neotropical …the great american biotic interchange and the...
TRANSCRIPT
Biota-FAPESP International Symposium on Phylogeography
Comparative phylogeography of Neotropical
carnivores:congruence vs. uniqueness of historical patterns
Eduardo Eizirik
Faculdade de Biociências, PUCRS, Brasil
Instituto Pró-Carnívoros, Brasil
Laboratory of Genomic Diversity, NIH, USA
Neotropical carnivores
The Great American Biotic
Interchange and the
diversification of Neotropical
carnivores
Meta-analysis of molecular phylogenies
and divergence dates derived from
nuclear gene supermatrices.
Contrasting patterns of diversification
among carnivoran families.
Eizirik (in press)
Eizirik (in press)
Ocelot (L. pardalis)
Mexico,
Central America
N. northwest SA
N. northeast SA
Brasil, Bolivia,
Paraguai
Margay (Leopardus wiedii)
N. Mexico
S. Mexico,
Guatemala
Costa Rica,
Nicaragua
Northern SA
Bolivia e Peru
Brasil e Paraguai
Historical Distribution
Current Distribution
Panthera onca
16, 26
2021, 22
23, 24, 25
30, 3731
40, 41
42, 4443
46
47
49,50
51,52
54
56,58
59 60, 62, 63
6465, 66
68
75
Markers:
- mtDNA control region
- 29 microsatellite loci
Pco P. concolor
Mexico,
Guatemala
Venezuela
Brazil
Argentina
Puma yagouaroundi1142 bp mtDNA
(CR, ATP8, ND5, 16S)
ML
Hya11 Mexico
Hya21 Mexico
Hya28 Mexico
Hya29 Mexico
Hya24 Mexico
Hya13 Guatemala
Hya14 Guatemala
Hya18 Mexico
Hya23 Mexico
Hya25 Mexico
Hya15 Guatemala
Hya45 Venezuela
Hya47 Venezuela
Hya49 Venezuela
Hya32 Brasil
Hya34 Brasil
Hya35 Brasil
Hya36 Brasil
Hya37 Brasil
Hya40 Argentina
Hya41 Argentina
Hya42 Argentina
Hya16 Argentina
Hya17 ArgentinaHya43 Argentina
*
*
*
**
**
Puma concolor
Leopardus pardalis
Leopardus wiedii
Panthera onca
Puma
yagouaroundi
L. tigrinus, L. geoffroyi, L. colocolo and L. guigna
Leopardus tigrinus
Leopardus geoffroyi
?
L. guina
L. colocolo
L. tigrinus
L. geoffroyi
Trigo et al. (in prep.)
mtDNA Control Region
bLti301 bLge06
bLti133 bLti60 bLti134 bLti110 bLge46 bLge79 bLti71 bLge11 Lco02 bLti47 bLti68 bLti30 bLti29 bLti74 bLti89 bLti100
bLti93 bLti95
bLti50 bLti46 bLti80 bLti113 bLti114 bLti59 bLti131
bLti119 bLti106 bLge07 bLti98
bLti108 bLti51 bLti92 bLti75 bLge02 bLge80
bLti10 bLti102 bLti04 bLti76 bLti62 bLti44 bLti72
bLge08 bLti87 bLti124 bLti05 bLti31 bLti61 bLge27
bLti56 bLti109 bLti69 bLge01 bLti117 bLti48 bLti135
bLti132 bLti99
bLti90 Ogu03
bLge63 bLge64
bLge52 bLti09 bLge10 bLti49 bLti79 bLge57 bLge35 bLge71 bLge13g bLti01
bLge20 bLge03 bLti121 bLge05 bLge56 bLge42 bLge29 bLge31 bLge04 bLge33
bLge66 bLge51 bLge50 bLge53
bLge61 bLge67 bLge68 bLge62
bLti65 bLge73 bLge37 bLge43 bLge44 bLge40 bLge70 bLge41 bLge89 bLge12 bLge39
bLco07 bLco06
bLco30 bLco13
bLti85 bLti24
bLti28
*
Trigo et al. (2008) Mol. Ecol.
bLco07
bLco06
bLco30
bLco13
bLti85
bLti24
bLti28
70
bLti301 SPbLge06 RS
bLti133 RSbLti60 SPbLti134 RSbLti110 RSbLge46 RSbLge 79 RSbLti71 SPbLge11 RSLco02bLti47 RS bLti68 RSbLti30 PARbLti29 PARbLti74 SPbLti89 PRbLti100 RS
bLti93 PRbLti95 RS
bLti50 RSbLti46 RSbLti80 RSbLti113 RSbLti114 RSbLti59 SPbLti131 RS
bLti119 RSbLti106 RSbLge07 RSbLti98 RS
bLti108 RSbLti51 RSbLti92 PRbLti75 SPbLge02 RSbLge80 RS
bLti10 RSbLti102 RSbLti04 RSbLti76 SPbLti62 SPbLti44 SCbLti72 MS
bLge08 RSbLti87 SPbLti124 RSbLti05 RSbLti31 PRbLti61 SPbLge27 RS
bLti56 SPbLti109 MGbLti69 RSbLge01 RSbLti117 RSbLti48 RSbLti135 RSbLti132 RS
bLti99 RSbLti90 PR
98
62
Ogu03
bLge63 BOL
bLge64 BOL
bLge52 ARG
bLti09 RS
bLge10 RS
bLti49 RS
bLti79 RS
bLge57 URU
bLge35 RS
bLge71 RS
bLge13 RS
bLti01 RS
bLge20 URU
bLge03 RS
bLti121 RS
bLge05 RS
bLge56 URU
bLge42 RS
bLge29 RS
bLge31 RS
bLge04 RS
bLge33 RS
bLge66 BOL
bLge51 ARG
bLge50 ARG
bLge53 ARG
bLge61 ARG
bLge67 BOL
bLge68 BOL
bLge62 BOL
bLti65 SP
bLge73 RS
bLge37 RS
bLge43 RS
bLge44 RS
bLge40 RS
bLge70 RS
bLge41 RS
bLge89 RS
bLge12 RS
bLge39 RS
95
73
65
62 Brazilian populations of L.
tigrinus may have mtDNA
lineages from three
distinct species!
L. tigrinus
clade
L. geoffroyi clade
L. colocolo clade
L. guigna
L. pardalis
L. wiedii
mtDNA haplotype network
Trigo et al. (in prep.)
L. tigrinus
clade
L. geoffroyi clade
L. colocolo clade
L. guigna
L. pardalis
L. wiedii
mtDNA haplotype network
L. tigrinus
(C, NE Brasil)
Trigo et al. (in prep.)
L. guigna
L. pardalis + L. wiedii
Haplotype network (intron 2, PLP1 gene, X chromosome)
L. colocolo
L. geoffroyi
Trigo et al. (in prep.)
L. guigna
L. pardalis + L. wiedii
L. tigrinus
(S, SE Brasil)
L. tigrinus
(C, NE Brazil)
Haplotype network (intron 2, PLP1 gene, X chromosome)
Trigo et al. (in prep.)
L. wiedii
L. colocolo
L. tigrinus
(C, NE Brazil)
L. geoffroyi
L. tigrinus
(S, SE Brasil)
Haplotype network (intron 2, ZFY and SMCY3 genes, Y chromosome)
Trigo et al. (in prep.)
Eizirik (in press)
Phylogeographic Patterns and Evolutionary History of the
Neotropical otter (Lontra longicaudis)
Cristine Silveira Trinca
Molecular markers
mtDNA sequences
- Control region
- ND5
-ATP8
10 microsatellite loci
mtDNA haplotype network
Signal for a recent demographic expansion in eastern SA
Tajima’s D: -2.31891; p = 0.000
Fu’s F = -7.96204; p = 0.001
Eastern SA
French Guiana
Brazilian Amazon
Peru
Bolivia
Colombia
Comparative phylogeography and demographic history of two South American procyonids:
Nasua nasua and Procyon cancrivorus
Mirian T. N. Tsuchiya-Jerep
LBGM samples
Skin samples (MZUSP)
N. nasua
UCLA samples
(Dr. Klaus Peter-Koepfli)
LBGM Samples
Skin samples (MZUSP)
P. cancrivorus
-2500
-2400
-2300
-2200
-2100
-2000
-1900
-1800
0 2 4 6 8 10
Number of clusters (K )
Ln
P(X
|D)
-1500
-1450
-1400
-1350
-1300
-1250
-1200
0 2 4 6 8 10
Number of clusters (K )
Ln
P(X
|D)
Nasua nasua Procyon cancrivorus
Eizirik (in press)
Tchaicka et al. (2007). Mol. Ecol.
Cerdocyon thous
Tchaicka et al. (2007). Mol. Ecol.
Cerdocyon thous
Eizirik (no prelo)
Genus Lycalopex
Genus Lycalopex
L. culpaeus
L. griseus L. gymnocercus
L. sechurae
L. vetulus
L. fulvipes
Tchaicka et al. (in prep)
bCth184
bCth228
bPcu001
bPcu002
DC18
bPcu003
bPcu004
Df20
Df27
bPgr001
bPgr002
Dgr18
Dgr19
bPgy50
bPgy64
bPgy72
bPgy66
bPgy77
bPve328
bPve353
bPgy83
bPse001
bPse002
bPse003
bPse004
bPve10
Pve307
Pve310
bPve322
bPve14
bPve15
bPve16
0.005 substitutions/site
ML phylogeny for 3
concatenated mtDNA
segments (2.5 kb)
99
96
75
58
100
57
95
10096
100
L. vetulus
L. gymnocercus
L. griseus
L. fulvipes
L. sechurae
L. culpaeus
Genus Lycalopex
M. Favarini et al. (in prep)
bCth184
bCth228
bPcu001
bPcu002
DC18
bPcu003
bPcu004
bPgr001
bPgr002
Dgr18
Dgr19
bPgy50
bPgy64
bPgy72
bPgy66
bPgy77
bPve328
bPve353
bPgy83
Df20
Df27
bPse001
bPse002
bPse003
bPse004
bPve10
Pve307
Pve310
bPve322
bPve14
bPve15
bPve16
5 changes
100
bCth184
bCth228
bPcu001
bPcu002
DC18
bPcu003
bPcu004
Df20
Df27
bPgr001
bPgr002
Dgr18
Dgr19
bPgy50
bPgy64
bPgy72
bPgy66
bPgy77
bPve328
bPve353
bPgy83
bPse001
bPse002
bPse003
bPse004
bPve10
Pve307
Pve310
bPve322
bPve14
bPve15
bPve16
0.005 substitutions/site
L. vetulus and L. gymnocercus in Brazil
Steve O’Brien
Warren Johnson
Robert Wayne
Klaus Koepfli
Kris Helgen
Juliana Vianna
Mauro Lucherini
Fabiana Rocha
Gitana Cavalcanti
Fabio Mazim
Cladinara R. Sarturi
AcknowledgementsTatiane C. Trigo
Taiana Haag
Cristine S. Trinca
Renata Bornholdt
Alexsandra Schneider
Manoel F. Rodrigues
Ezequiel Fabiano
Eunice M. Matte
Carlos Benhur Kasper
Marina O. Favarini
Anelisie S. Santos
Taiz L. Simão
Carla B. Pires
Gabriel M. Souza
Livia Lehugeur
Vanessa G. Dias
Letícia K. Freitas
Eduarda C. Freitas
Support: CNPq, CAPES, FAPERGS, NIH, NSF, FNMA,
CESP, WCS, WWF, CVRD, PETROBRAS, PUCRS
Thales R. Freitas
Francisco M. Salzano
Sandro L. Bonatto
Ligia Tchaicka
Larissa Oliveira
Flávio H. Rodrigues
Juliana Vianna
Laury Cullen
Tadeu Oliveira
Cibele Indrusiak
Ronaldo G. Morato
The Great American Biotic
Interchange and the
diversification of Neotropical
carnivores
Meta-analysis of molecular phylogenies
and divergence dates derived from
nuclear gene supermatrices.
Contrasting patterns of diversification
among carnivoran families.
Eizirik (in press)
GHR
Lycalopex culpaeus
Lycalopex vetulus
Lycalopex fulvipes
Lycalopex griseus
Lycalopex gymnocercus
Lycalopex sechurae
Canis latrans
Cerdocyon thous
Chrysocyon brachyurus
TCP1
ATP7A E3
FES
CYP1A1
DGKG
Leopardus pardalis
Leopardus wiedii
Leopardus colocolo
Leopardus geoffroyi
Leopardus tigrinusPLP1I2
CHRNA1
SILV