coarse graining atactic polystyrene and its analogues · 2017-02-07 · !at longer times...

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Coarse Graining Atactic Polystyrene and its Analogues Anupriya Agrawal, 1,2 Dvora Perahia, 1 Gary S. Grest 3 1 Department of Chemistry, Clemson University, Clemson, SC 29630 2 Department of Mechanical Engineering and Materials Science, Washington University in St. Louis, St. Louis, MO 63130 3 Sandia National Laboratories, Albuquerque, NM 87185 Abstract Using a new set of coarse grain potentials for polystyrene, we provide new insight into interdiffusion. This potential incorporates 2 beads to represent one monomer. This 2:1 CG model presents an immense improvement over previous studies since it captures the stereochemistry of the polystyrene. These CG models can be back- mapped to the atomistic structure. With this successful model, we provide new insights into impacts of interfacial roughness on diffusion. Bead-spring CG retaining atomistic detail All-atom Interdiffusion Adhesion, welding, self healing Manufacturing polymer based devices Methodology for Coarse Graining All-atom melt MD simulation – LAMMPS 4 Goals Develop methodology for coarse graining of polystyrene and back- mapping the results to atomistic level Understand the mechanism of interdiffusion of polystyrene using this CG model Acknowledgements: We kindly acknowledge DOE (DE-SC007908) for financial support. We used computational resources from NERSC and Clemson Computing and Information Technology (Palmetto Cluster). Coarse Graining Polystyrene Interdiffusion of Polystyrene A B B B B B A A A A CG model of polystyrene - A bead represent the backbone and B bead represent the phenyl group 5,6 Radial distribution function from atomistic (solid lines) and CG model (dashed lines) 7 M w = 50kDa, 139 chains in each block Rough Interface Smooth Interface Starting state t = 200ns Starting state t = 200ns Bulk diffusion coefficient decreases with increasing M w . Time taken for interface to become homogeneous at 500K was ~50ns. At longer times (>200ns), interfacial profile does not remain smooth. Density profile Density profile Neutron reflectometry experiments capture long time interdiffusion of polystyrene. At these time scales, the experiments capture overall diffusive motion. 1,2 Computational studies using bead-spring models were employed to study similar systems. These studies found that the onset of diffusion is dominated by chain ends. 3 Here we probe the onset of diffusion using a coarse grain model that carries some of the chemical information of the polymer. References 1. A. Karim, G. P. Fletcher, T. P. Russell, Macromolecules, 1994, 27, 6973. 2. R. P. Wool, Polymer Interfaces:Structure and Strength (Hanser Publishers) Munich, Germany, 1995. 3. F. Pierce, D. Perahia, G. S. Grest, EPL, 2011, 95, 46001. 4. S. Plimpton, J Comp Phys, 1995 117, 1. Conclusions Potential for 2:1 coarse grain model of polystyrene is developed that capture the stereochemistry, using a single all-atom atactic polystyrene melt simulation. An excellent match with the experimental result for the density dependence of M w is obtained using our CG model. Thermal expansion coefficient and compressibility calculated using our model match well with the experimental data. Diffusion coefficient of atactic polystyrene decreases with increasing M w . The scaling factor obtained from CG model increases with the M w . Interdiffusion of polystyrene takes a different route for diffusion in rough and smooth interfaces. Interpenetration width for the two cases Validation of CG model Thermal expansion coefficient from CG model for M w = 20 kDa and experiment 8 for M w = 34.5 kDa Density dependence of polystyrene on molecular weight. Experimental data is obtained from Ref 8. It takes approximately 5ns to reach τ d at 500K. At longer times (>200ns), interface profile does not remain smooth which was also observed in rough interface simulation. Bonded distribution for meso and racemic pairs of atactic polystyrene Non-bonded interaction energy between different type of beads obtained after fitting 5.V. A. Harmandaris, N. P. Adhikari, N. F. A. van der Vegt, K. Kremer, Macromolecules 2006, 39, 6708. 6.D. Fritz, V. A. Harmandaris, K. Kremer, N. F. A. van der Vegt, Macromolecules 2009, 42, 7579. 7. A. Agrawal, D. Aryal, D. Perahia, T. Ge, G. S. Grest, Macromolecules, 2014, 47, 3210–3218 8. P. Zoller, D. J. Walsh, ‘Standard Pressure-Volume-Temperature Data for Polymers’, Technomic: Lancaster, 1995, 132-140. M w = 50kDa, 139 chains in each block Define beads Bonded interactions by Boltzmann inversion Nonbonded interactions by iterative Boltzmann inversion Validation Initial guess for interactions Calculate properties and compare with target Iterative Boltzmann Inversion Good agreement? No Yes Back-mapping Tweak the interaction

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Page 1: Coarse Graining Atactic Polystyrene and its Analogues · 2017-02-07 · !At longer times (>200ns), interface profile does not remain smooth which was also observed in rough interface

Coarse Graining Atactic Polystyrene and its Analogues Anupriya Agrawal,1,2 Dvora Perahia,1 Gary S. Grest3

1Department of Chemistry, Clemson University, Clemson, SC 29630 2Department of Mechanical Engineering and Materials Science, Washington University in St. Louis, St. Louis, MO 63130

3Sandia National Laboratories, Albuquerque, NM 87185

Abstract Using a new set of coarse grain potentials for polystyrene, we provide new insight into interdiffusion. This potential incorporates 2 beads to represent one monomer. This 2:1 CG model presents an immense improvement over previous studies since it captures the stereochemistry of the polystyrene. These CG models can be back-mapped to the atomistic structure. With this successful model, we provide new insights into impacts of interfacial roughness on diffusion.

Bead-spring

CG retaining atomistic detail

All-atom

Interdiffusion Adhesion,

welding, self healing

Manufacturing polymer based

devices

Methodology for Coarse Graining All-atom melt MD

simulation – LAMMPS4

Goals Ø  Develop methodology for coarse graining of polystyrene and back-

mapping the results to atomistic level Ø  Understand the mechanism of interdiffusion of polystyrene using

this CG model

Acknowledgements: We kindly acknowledge DOE (DE-SC007908) for financial support. We used computational resources from NERSC and Clemson Computing and Information Technology (Palmetto Cluster).

Coarse Graining Polystyrene Interdiffusion of Polystyrene

A B

B

B B

B

A A A A

CG model of polystyrene - A bead represent the backbone and B bead represent the phenyl group5,6

Radial distribution function from atomistic (solid lines) and CG model (dashed lines)7

Mw = 50kDa, 139 chains in each block

Rough Interface

Smooth Interface

Starting state t = 200ns

Starting state t = 200ns

Ø Bulk diffusion coefficient decreases with increasing Mw.

Ø  Time taken for interface to become homogeneous at 500K was ~50ns.

Ø At longer times (>200ns), interfacial profile does not remain smooth.

Density profile

Density profile

Ø  Neutron reflectometry experiments capture long time interdiffusion of polystyrene. At these time scales, the experiments capture overall diffusive motion. 1,2

Ø  Computational studies using bead-spring models were employed to study similar systems. These studies found that the onset of diffusion is dominated by chain ends.3

Ø  Here we probe the onset of diffusion using a coarse grain model that carries some of the chemical information of the polymer.

References 1.  A. Karim, G. P. Fletcher, T. P. Russell, Macromolecules, 1994, 27, 6973. 2.  R. P. Wool, Polymer Interfaces:Structure and Strength (Hanser Publishers) Munich,

Germany, 1995. 3.  F. Pierce, D. Perahia, G. S. Grest, EPL, 2011, 95, 46001. 4.  S. Plimpton, J Comp Phys, 1995 117, 1.

Conclusions Ø  Potential for 2:1 coarse grain model of polystyrene is developed that capture the stereochemistry, using a

single all-atom atactic polystyrene melt simulation. Ø  An excellent match with the experimental result for the density dependence of Mw is obtained

using our CG model. Ø  Thermal expansion coefficient and compressibility calculated using our model match well

with the experimental data. Ø  Diffusion coefficient of atactic polystyrene decreases with increasing Mw. The scaling factor

obtained from CG model increases with the Mw.

Ø  Interdiffusion of polystyrene takes a different route for diffusion in rough and smooth interfaces.

Interpenetration width for the two cases

Validation of CG model

Thermal expansion coefficient from CG model for Mw = 20 kDa and experiment8 for Mw = 34.5 kDa

Density dependence of polystyrene on molecular weight. Experimental data is obtained from Ref 8.

Ø  It takes approximately 5ns to reach τd at 500K. Ø At longer times (>200ns), interface profile does not remain smooth which was also observed in rough

interface simulation.

Bonded distribution for meso and racemic pairs of atactic polystyrene

Non-bonded interaction energy between different type of beads obtained after fitting

5. V. A. Harmandaris, N. P. Adhikari, N. F. A. van der Vegt, K. Kremer, Macromolecules 2006, 39, 6708. 6. D. Fritz, V. A. Harmandaris, K. Kremer, N. F. A. van der Vegt, Macromolecules 2009, 42, 7579. 7. A. Agrawal, D. Aryal, D. Perahia, T. Ge, G. S. Grest, Macromolecules, 2014, 47, 3210–3218 8. P. Zoller, D. J. Walsh, ‘Standard Pressure-Volume-Temperature Data for Polymers’, Technomic:

Lancaster, 1995, 132-140.

Mw = 50kDa, 139 chains in each block

Define beads

Bonded interactions by Boltzmann inversion

Nonbonded interactions by iterative Boltzmann

inversion

Validation

Initial guess for interactions

Calculate properties and compare with

target

Iterative Boltzmann Inversion

Good agreement?

No Yes

Back-mapping

Tweak the interaction