brian mccourt - the semantic foundation
DESCRIPTION
to Interoperable Clinical and Research Information Systems in CardiologyBrian McCourt, Duke Clinical Research Institute, James Tcheng, MD, Duke Translational Medicine Institute, David Kong, MD, Duke Clinical Research Institute, Bron Kisler, Clinical Data Interchange Standards ConsortiumTRANSCRIPT
Brian McCourt1, James Tcheng, MD2, David Kong, MD1, Bron Kisler3
1Duke Clinical Research Institute, 2Duke Translational Medicine Institute, 3Clinical Data Interchange Standards Consortium
The Semantic Foundation to Interoperable Clinical and Research Information Systems in Cardiology
Robert M. Califf, Robert A. Harrington, Leanne K. Madre, Eric D. Peterson, Deborah Roth and Kevin A. Schulman. Curbing The Cardiovascular Disease Epidemic: Aligning Industry, Government, Payers, And Academics. Health Affairs, 26, no.1 (2007):62-74.
htt // t t h lth ff i / i/ i t/26/1/62
Collect Once, Repurpose Many Times
Clinical Data
Research
Clinical
Decision
Support Public & Population
Health
Quality
Measurement & Patient
Safety
Business,
Operations/
Administration
Don Mon, AHIMA
Groundbreaking Advances
“The adoption of standards and common data elements across diseases is
groundbreaking, promotes cross-disease analysis, and provides a rich source of information to be mined by researchers
around the world.”
Barbara M. Alving, M.D., Acting Director, NCRR
NIH Launches Clinical Studies Nationwide to Investigate Rare Diseases $71 Million Effort to Address Neglected Conditions (Friday, May 5, 2006)
Barbara M. Alving, M.D., Acting Director, NCRR
NIH Launches Clinical Studies Nationwide to Investigate Rare Diseases $71 Million Effort to Address Neglected Conditions (Friday, May 5, 2006)
President’s Council of Advisors on Science and Technology (Dec 2010)
Atomic data elements as the unit of exchange2 use cases related to these projects
CV Standards Background
Long history of data standards work by Duke and cardiovascular professional societies, lead by ACC.2006-2008: Under NIH Roadmap contract, Duke partnered with CDISC and HL7 to develop data standards for Tuberculosis & Cardiology (ACS specifically)
Focus on methodology. 1st time for clinical content as “Data Standard”May 2008 approved as joint CDISC (Clinical Research) & HL7 (Healthcare) standards
2008-2010: Multiple emerging initiatives2010: Opportunity to expand the content of these standards and align to meet needs of broader stakeholder community
Mission
Develop and maintain a consensus set of cardiology data standards as a single collaborative set of work
products serving stakeholders across the healthcare industry
Topics
Cardiology Data Standards ProgramBroad multi-stakeholder project to develop cardiology data standards across healthcare
Project stakeholders, objectives and deliverablesCardiology Domain Analysis Model, R2HL7 & the healthcare pathwayCDISC & the research pathway
Project OverviewCardiovascular Data
Car
diov
erte
rdef
ibpr
oced
ures
(ICD
Reg
istry
)C
onge
nita
l Hea
rt C
ondi
tions
(IMPA
CT)
Con
com
itant
Med
icat
ions
Dem
ogra
phic
s
Vita
l Sig
ns
Adv
erse
Eve
nts
STE
MI/N
STE
MI
(AC
TIO
N)
Top
100
EH
R d
ata
elem
ents
Car
diac
Cat
han
d P
CI
(Cat
hPC
I
Cor
otid
Arte
ry S
tent
ing
and
End
arte
rect
omy
(CA
RE
)
Non-specialty data Common cardiovascular clinical observations - Sub-specialty domains
18 to
tal d
omai
ns a
nd g
row
ing
Cardiac ImagingACC/AHA
/STS
NCRI Grant*
ACC/AHA/STS RegistriesCDISC
Exe
rcis
e E
lect
roca
rdio
grap
hy
SPEC
T M
PI
Ech
ocar
diog
raph
y
Cor
onar
y C
TA
AC
S H
isto
ry &
Sym
ptom
s
CTN
BP
Wom
ens’
Pre
sent
atio
n S
x
FDA
CV Clinical- Data Elements- Event definitions- Clinical terminology anddata definitions
CDISC- SDTM standard for FDA submission- Controlled Terminology alignment- CRF templates- Stds adoption by researchers
HL7- Mappings to HL7 RIM & EHR stds- Adoption support for EHR’s- CCHIT EHR Certification (future)
Future
CompletedIn progress
In project scopeFuture
CV
Out
com
es
Stro
ke
*National Cardiovascular Research Infrastructure
CDISC
CDASH Standards
ACC
National Cardiovascular
Data Registries
Collaborating OrganizationsAmerican College of Cardiology Foundation (ACC)Clinical Data Standards Interchange Consortium (CDISC)Duke Clinical Research Institute (DCRI)Duke Translational Medicine Institute (DTMI)US Food and Drug Administration (FDA)Health Level Seven (HL7)National Cancer Institute (NCI)National Cardiovascular Research Infrastructure (NCRI)
Partial funding provided by NHLBI Award 1RC2HL101512-01
ACC: Data, Standards and Informatics
Journal of the American College of Cardiologyhttp://content.onlinejacc.org/cgi/collection/data_standards
CDISC Standards & Therapeutic Area Initiatives
Clinical Data Acquisition Standards Harmonization (CDASH)
Widely adopted data elements for common trial domainsActively developing efficacy domains
Study Data Tabulation Model (SDTM)
Data model for submission of trial data to FDA
Karen Hicks, MD. Standardized Data Collection For Clinical Trials. March 26, 2010https://www.trialstransformation.org/standardized-data-collection-for-cardiovascular-trials-march-26-2010-meeting
Karen Hicks, MD. Standardized Data Collection For Clinical Trials. March 26, 2010https://www.trialstransformation.org/standardized-data-collection-for-cardiovascular-trials-march-26-2010-meeting
FDA Cardiovascular Endpoints
Definition of Cardiovascular DeathDefinition of Non-Cardiovascular DeathDefinition of Myocardial InfarctionCommon Classification Schemes for Myocardial Infarction CategoriesDefinition of Hospitalization for Unstable AnginaDefinition of Transient Ischemic Attack and StrokeDefinition of Heart Failure Requiring HospitalizationInterventional Cardiology DefinitionsDefinition of Peripheral Arterial Revascularization ProcedureDefinition of Stent ThrombosisBleeding Definitions
Work Products
Healthcare ResearchUse cases and patient scenarios
Cardiovascular Domain Analysis Model
Data elements and clinical definitions
Activity diagrams
Information model
Healthcare (HL7 RIM) representation HL7
Sample data collection forms CDISC
CDISC (CDASH, SDTM) representations CDISC
Electronic metadata library publication
HL7 and CDISC
via NCI EVS/caDSR
Domain Analysis Model
Produced by subject matter expertsRepresents the domain of cardiology using our language (not technical speak)Explicitly describes requirementsIs the medium that requirements are communicated to technical experts
Scope & Use Cases
ScopeGeneral cardiovascular care (broad)Ischemic heart disease orientation (deep)
Use CasesDocumentation of cardiovascular patient of interest across providersReporting to a quality improvement registryReporting to a clinical trialSubmission of clinical trial with cardiovascular endpoints to the FDA
Use Cases & Storyboards
RoleExamples of typical real life scenariosText descriptions of the work processes that an information system needs to fit into
ProductWritten use case and storyboard documents
Use Cases & Storyboards
Data Elements
Data Element Name: History of peripheral vascular disease
Clinical Definition: Indicate if the patient has a history of peripheral vascular disease. This can include:
1. Claudication either with exertion or at rest.2. Amputation for arterial vascular insufficiency.3. Aorto-iliac occlusive disease reconstruction, peripheral vascular bypass surgery, angioplasty or stent; or percutaneous intervention to the extremities.4. Documented abdominal aortic aneurysm (AAA) repair or stent.5. Positive non-invasive/invasive test.
This does not include procedures such as vein stripping, carotid disease, or procedures originating above the diaphragm.
Valid Values: Yes, No
Merging Killip Class across multiple databases
Variable Name Type / Values Description / Derivation
KILLIPB Numeric1=Killip class I2=Killip class II3=Killip class III4=Killip class IV
Baseline Killip ClassGUSTO IIb
GUSTO2B.KILLIPB (3=I, 4=II, 5=III, 6=IV) **at randomizationOtherwise missingPURSUIT
****IMPUTED KILLIP CLASS****
QSRAND.RALES (3=None, 4=<= 1/3 up, 5=>1/3 up) DEMO.DSYSBPB
Killip 1 = RALES=3 AND DSYSBPB>=80Killip 2 = RALES=4 AND DSYSBPB>=80Killip 3 = RALES=5 AND DSYSBPB>=80Killip 4 = DSYSBPB<80
**rales and SBP at randomizationPARAGON A
BASELINE.KILLIPB (1=I, 2=II, 3=III, 4=IV) **at randomizationPARAGON B
DEMOG.KILLIP (1=I, 2=II, 3=III, 4=IV) **at time of index event.GUSTO IV ACS
N/ASYNERGY
HISTBASE.KILLIP * at time of randomization
Example courtesy of Karen Pieper
Definitions are recommended by expert panel and formally vetted via CDISC & HL7 public processes to produce
consensus version. ACC serves as stewarding
organization of resulting standards.
Aggregation & Harmonization Process
3. Elements needed to support FDA Endpoint definitions
1. EHR Top 100
2. Select NCDR elements for harmonization and inclusion in standard
NCRI Data Standards Workgroup
4. CDISC & HL7 StandardsDevelopment Processes
5. Maintenance
Harmonization is hard work!
Many sources, inconsistent definitions. Often for a good reason.
Sample Data Collection Forms
Case Report Form (CRF) mockupCRF’s are familiar to many stakeholders
Highlights metadata and relationship issues across domainsHighlights requirement to align data elements and clinical workflows
Data Elements
Activity Diagram
RoleRepresent patient care processesRecognize the data in context of the workflow
ProductCV Activity diagrams based on care guidelines and common practices
Activity Diagram
Information Model
RoleRepresent scope of the data used in the domainRepresent the relationship among data elementsMechanism to load the content into a metadata repository (EVS/caDSR, CDISC SHARE)
ProductInformation model for cardiovascular disease including diagram, classes, attributes, descriptions
Information Model
Cardiology (Acute Coronary Syndrome) Domain Analysis Model, Release 1Cardiology (Acute Coronary Syndrome) Domain Analysis Model, Release 1
Information Model: Design Notes
Using Enterprise Architect as UML modeling toolIncludes annotations of NCI EVS Vocab, HL7 Reference Information Model, CDISC SDTM and use casesFollowing NCI modeling conventions to support the metadata publication process
Semantic Integration Workbench (SIW) process for loading model into the Enterprise Vocabulary Server/cancer Data Standards Repository (EVS/caDSR)
Add-on tooling: build a back-end EA reporting function to generate clinician friendly data element reports (to replace Excel data element curation spreadsheets)
NCI EVS\caDSR Data Element Representation
HL7
Clinical Interoperability CouncilForum and portal for domain experts to contribute clinical knowledge to using HL7 Development Framework (HDF)Drafting a DAM Modeling GuideContributing requirements, and typically information models, to NCI’s EVS/caDSR
Detailed Clinical ModelsHighly specific, free of context
Schedule
Spring/Summer: CDISC Public CommentCardiology CDASH domains with SDTM mapping
August 1 – September 5: HL7 Ballot OpenCardiology DAM, R2
October: Terminology/Metadata PublicationVia UML semantic integration
Healthcare & Research Pathways
CV Domain Analysis Model, R2
HL7 RIM Representation
Cardiovascular EHR Functional Profile CCHIT Certification
RIM-derived messages
NCI EVS/caDSR Terminology/
Metadata Publication
CDISC CDASH Representation SDTM Mappings
FDA Cardiovascular Trials Data Warehouse
BRIDG Model
Future
Brian [email protected]
Thank You!