brenda tutorial · brenda, directly linked to the enzyme summary page. enzyme summary page (cf....
TRANSCRIPT
BRENDA Tutorial…how to search for organisms
TaxTree
The BRENDA TaxTree Explorer is based on the Taxonomy Database of the NCBI.
(http://www.ncbi.nlm.nih.gov/taxonomy)
You can either browse or search the TaxTree.
You can run a search byentering the organism name, the synonym, or the scientificname.
On the result page thesystematic classification ofthe searched organisms isdisplayed in the Tree View.
Detailed information on theknown protein sequences ofthis organism
Detailed information on theknown protein sequences ofthis organism
A direct link to the NCBI
Taxonomy Database
A list of EC numbers
with organism-specific
enzyme data in
BRENDA, directly linked
to the Enzyme Summary
Page
Enzyme Summary Page (cf. BRENDA Tutorial - Enzyme Search -)
Enzyme Summary Page (cf. BRENDA Tutorial - Enzyme Search -)
You can choose the
organism of interest and
submit an organism-
specific view of the
enzyme data.
The synonyms of
the organism are
shown here.
You can use thebrowse function tofind an organism.
You can navigate alongthe hierarchical tree byclicking on the +-icon tofind the desiredorganism.
You can navigate alongthe hierarchical tree byclicking on the +-icon tofind the desiredorganism.
Similar to the results of theTaxTree „Search mode“ you canfind the details about the proteinsequences, the link to the NCBI Taxonomy, the synonyms, and tothe organism-specific enzyme datain BRENDA.