bid ce workshop 1 session 07 - digitization software example - biota

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23 AUGUST 2016 THE BID PROGRAMME IS FUNDED BY THE EUROPEAN UNION Digitizing data: example of the BIOTA software Sophie Pamerlon

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Page 1: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

23 AUGUST 2016THE BID PROGRAMME IS FUNDED BY THE EUROPEAN UNION

Digitizing data: example of the BIOTA software

Sophie Pamerlon

Page 2: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

23 AOÛT 2016THE BID PROGRAMME IS FUNDED BY THE EUROPEAN UNION

Numérisation de données : exemple du logiciel BIOTA

Sophie Pamerlon

Page 3: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

List of softwares by the BID communityP

re-w

orks

hop

activ

ity re

sults

Trainers Students

Spreadsheets, MS excel DIVA GIS

Spreadsheets, Google sheets Xper2

Spreadsheets, Calc Maxent

Specify SPSS for windows

BIOTA World coordinate converter

Brahms GBIF ECAT Name Parser

Elysia MANIS groreferencing calculator

QGIS Distance Sample

OpenRefine GEOLocate

Programming language: Python GBIF spreadsheet processor

Programming language: R ArcView/ArcGIS for Destop

EMu SMART

Symbiota ArcGIS

Link to detailed list

Page 4: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Logiciels listés par la communauté BIDA

ctiv

ité p

répa

rato

ire :

résu

ltats

Trainers Students

Spreadsheets, MS excel DIVA GIS

Spreadsheets, Google sheets Xper2

Spreadsheets, Calc Maxent

Specify SPSS for windows

BIOTA World coordinate converter

Brahms GBIF ECAT Name Parser

Elysia MANIS groreferencing calculator

QGIS Distance Sample

OpenRefine GEOLocate

Programming language: Python GBIF spreadsheet processor

Programming language: R ArcView/ArcGIS for Destop

EMu SMART

Symbiota ArcGIS

Link to detailed list

Page 5: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

List of softwares by the BID communityP

re-w

orks

hop

activ

ity re

sults

Link to detailed list

Page 6: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Logiciels listés par la communauté BIDA

ctiv

ité p

répa

rato

ire :

résu

ltats

Lien vers la liste détaillée

Page 7: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Where to find it?In

stal

ling

BIO

TA

http://viceroy.eeb.uconn.edu/Biota/

Page 8: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Où trouver le logiciel ?In

stal

ler B

IOTA

http://viceroy.eeb.uconn.edu/Biota/

Page 9: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

DownloadIn

stal

ling

BIO

TA

http://viceroy.eeb.uconn.edu/Biota/Biota2Pages/biota2_download.html

Page 10: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

TéléchargementIn

stal

ler B

IOTA

http://viceroy.eeb.uconn.edu/Biota/Biota2Pages/biota2_download.html

Page 11: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Set-up and User GuideIn

stal

ling

BIO

TA

● Unzip the archive you downloaded

● Extract the contents on your computer

● Click the “BiotaAPPWin300.exe” file

→ BIOTA launches

NOTE: if an error message appears, check the regional settings of your computer. The date format must be dd/mm/yyyy

User guide: http://viceroy.eeb.uconn.edu/Biota/Biota2Pages/Biota2Download/Biota_2_User's_Manual.pdf

Page 12: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Installation et Guide d’utilisationIn

stal

ler B

IOTA

● Dézipper l’archive que vous avez téléchargée

● En extraire le contenu sur votre ordinateur

● Cliquer sur l’application “BiotaAPPWin300.exe”

→ lancement de BIOTA

NOTE: si un message d’erreur apparaît, vérifier les paramètres régionaux (date et heure) de l’ordinateur. Le format de date doit être jj/mm/aaaa

Guide d’utilisation : http://viceroy.eeb.uconn.edu/Biota/Biota2Pages/Biota2Download/Biota_2_User's_Manual.pdf

Page 13: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Main pageM

anag

ing

data

Page 14: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Page d’accueilG

estio

n de

s do

nnée

s

Page 15: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Add a specimenA

ddin

g da

ta

Page 16: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Ajouter un spécimenA

jout

er d

es d

onné

es

Page 17: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Assign a catalog number S

peci

men

Man

agem

ent

Page 18: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Attribuer un numéro de catalogueG

estio

n d’

un s

péci

men

Page 19: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Catalog number assigned!S

peci

men

Man

agem

ent

Page 20: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Numéro de catalogue attribué !G

estio

n de

spé

cim

en

Page 21: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Assign a taxonS

peci

men

Man

agem

ent

Page 22: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Attribuer un taxonG

estio

n d’

un s

péci

men

Page 23: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Assign a taxonS

peci

men

Man

agem

ent

Page 24: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Attribuer un taxonG

estio

n d’

un s

péci

men

Page 25: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Determination historyS

peci

men

Man

agem

ent

Page 26: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Historique de déterminationG

estio

n de

spé

cim

en

Page 27: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Preparation techniqueS

peci

men

Man

agem

ent

Page 28: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Technique de préparationG

estio

n de

spé

cim

en

Page 29: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Auxiliary fieldsS

peci

men

Man

agem

ent

Page 30: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Champs annexesG

estio

n de

spé

cim

en

Page 31: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

NotesS

peci

men

Man

agem

ent

Page 32: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

NotesG

estio

n de

spé

cim

en

Page 33: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

ReferencesS

peci

men

Man

agem

ent

Page 34: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

RéférencesG

estio

n de

spé

cim

en

Page 35: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Main pageM

anag

ing

data

Page 36: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Page d’accueilG

estio

n de

s do

nnée

s

Page 37: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Add a new collectionC

olle

ctio

n M

anag

emen

t

Page 38: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Ajouter une nouvelle collectionG

estio

n de

col

lect

ion

Page 39: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Georeferencing the collectionC

olle

ctio

n M

anag

emen

t

Page 40: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Géoréférencer la collectionG

estio

n de

col

lect

ion

Page 41: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Main pageM

anag

ing

data

Page 42: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Page d’accueilG

estio

n de

s do

nnée

s

Page 43: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Add a localityLo

calit

y M

anag

emen

t

Page 44: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Ajouter une localitéG

estio

n de

s lie

ux

Page 45: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Main pageM

anag

ing

data

Page 46: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Page d’accueilG

estio

n de

s do

nnée

s

Page 47: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Add a referenceR

efer

ence

s M

anag

emen

t

Page 48: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Ajouter une référenceG

estio

n de

s ré

fére

nces

Page 49: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Main pageM

anag

ing

data

Page 50: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Page d’accueilG

estio

n de

s do

nnée

s

Page 51: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Add personelP

erso

nel M

anag

emen

t

Page 52: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

Ajouter une personneG

estio

n de

s pe

rson

nes

Page 53: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

23 AUGUST 2016THE BID PROGRAMME IS FUNDED BY THE EUROPEAN UNION

Digitizing data: example of the BIOTA software

Sophie Pamerlon

Page 54: BID CE Workshop 1   session 07 - Digitization Software Example - BIOTA

23 AOÛT 2016THE BID PROGRAMME IS FUNDED BY THE EUROPEAN UNION

Numérisation de données : exemple du logiciel BIOTA

Sophie Pamerlon