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Université de Montréal
Progress Towards a Total Synthesis of
(±)-Longithorone C
Par
Joseph E. Zakarian
Département de chimie,
Faculté des arts et de sciences
Memoire présenté à la Faculté des études supérieures
en vue de l'obtention du grade de
Maître ès sciences (M.Sc.) en chimie
Juillet 2007
© Joseph E. Zakarian, 2007
Université de Montréal
Faculté des études supérieures
Ce mémoire intitulé:
Progress Towards a Total Synthesis of
(±)-Longithorone C
Présenté par
Joseph E. Zakarian
a été évalué par un jury composé des personnes suivantes:
Président-rapporteur: André B. Charette
Directeur de recherche: Shawn K. Collins
Membre du jury : William D. Lubell
Mémoire accepté le:
11
111
To my Wife Araks
For the loving support
IV
Table of Contents
Title Page ..................................................................................................... i
·fi . .. Jury IdentI IcatIon ...................................................................................... 11
Dedication Page .......................................................................................... iii
Summary ................................................................................................. vii
Résumé ................................................................................................... viii
Acknowledgements ................................................................................... .ix
List of Figures ............................................................................................ x
List ofSchemes ......................................................................................... xii
List of Tables ........................................................................................... xv
Abbreviations ........................................................................................... xvi
Chapter 1: Introduction to the Longithorones: Paracyclophane Natural
1.1 1.2 1.2.1 1.2.2 1.2.3 1.2.4 1.2.5 1.3 1.3.1 1.3.2
1.3.3 1.4 1.4.1 1.4.2 1.4.3
1.5
Products .......................................................................... 1
Ring Closing Olefin Metathesis as a Route to Strained Systems .................. . Synthesis of Longithorone A ........................................................... . Introduction and Synthetic Challenges ................................................ . Preparing [12]Paracyc1ophanes by Enyne Metathesis ............................... . Installation ofthe Atropisomeric Control Element. .................................. . Enyne Metathesis Macrocyc1ization using an Atropisomeric Control Element... Conclusion ................................................................................. . Synthesis ofLongithorone B ........................................................... . [3,3]-Rearrangement in Forming Ortho-Allyl PhenoI31 ............................ . Intramolecular Coupling of the Famesylated Side Chain by Friedel-Crafts
Alkylation ................................................................................. . Conclusion ................................................................................ . Longithorone C: A Representative Compound ....................................... . Synthetic Challenges and Goals ........................................................ . Forming [12]Paracyc1ophanes: A Model Study ...................................... . Determining the Optimal Site for Metathesis along the Ansa-Bridge and Formation of Tri-substituted Olefins by RCM ....................................... . Conclusion ................................................................................ .
1 3 3 6 7 9 11 12 13
14 15 16 16 16
21 24
v
Chapter II: Model Studies Directed Towards the Total Synthesis of Longithorone C via Macrocyclic Olefin Metathesis ....................................... 25
II.1 Retrosynthetic Analysis and Model Studies. .............................. ....... .. . .. 25 II.2 Synthesis ofPentafluoro-2,5-dihydroxybenzoate 60................................. 27 II.3 Synthesis of the AHylic AlcohoI61..................................................... 28 II.4 Macrocyclic Olefin Metathesis ofModel System using trans,trans-FamesoI65 ... 30 II.5 Synthesis of cis-Famesol 62.............................................................. 32 11.5.1 First Generation Synthesis of cis-FamesoI62......................................... 32 11.5.2 Second Generation Synthesis of cis-Famesol 62...................................... 33 II.6 Metathesis ofModel System Incorporating cis-FamesoI62......................... 36 II.7 Synthesis ofcis-Olefin 93............................................ ............ ........ 39 II.8 Metathesis ofModel System 94 using cis-Olefin 93.................................. 40 II.9 Conclusion. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .. . . . . . . . . . . . . . . . . .. 42
Chapter III: Attacking the Total Synthesis of (±)-Longithorone C: Attachment of Alkyl Chains via Coupling Reactions ....................................... 43
111.1 Negishi Coupling Reactions.............................................................. 44 111.2 Copper Catalyzed Grignard Reaction. . . . . . . . . . . .. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 45 III.2.1 Optimizing Mg-X Exchange............................................................. 48 III.2.2 Optimizing sNi/SN2-type Product Ratio............................................... 50 III.2.3 Mechanism behind the alyProduct Ratios............................................. 53 IIL2.4 Attaching cis-Olefin 93 via the Copper Catalyzed Grignard Reaction..... .......... 56 111.3 Determining Stereochemistry ofthe Side Chains................ ..................... 58 111.4 Conclusion. . .. . . . . . . . . . . . . . .. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .. 59
Chapter IV: Improved Gearing Elements for Macrocyclic Olefin Metathesis:
IV.l IV.2 IV.3
IV.4
IV.5
A Mode) Stndy ................................................................... 60
Improved Gearing Element used in Model Systems ................................ .. Molecular Modeling using the Bistrifluoromethyl Auxiliary on Model Systems Molecular Modeling using the Bistrifluoromethyl Auxiliary on an AH Carbon System ...................................................................................... . Determining the Ideal Gearing Element in the Formation of an AH-Carbon [12]Paracyclophane ...................................................................... .. Conclusion ................................................................................. .
60 63
65
66 70
VI
Chapter V: Approach Towards the Total Synthesis of (±)-Longithorone C ...... 72
V.l RRCM in Forming an AlI-Carbon [12]Paracyc1ophane. ............................. 73 V.2 Future Work for Completing the Total Synthesis of Longithorone C............... 76 V.3 Conclusion.............................................. ..................... .............. 80
Chapter VI: Experimental .................................................................... 81
VI. 1 General Experimental Notes. . .. . .. . ... ...... ... ...... ................................... 81 VI.2 Experimental Procedures and Data............. ............................ ............. 85
Vll
Summary
The growing number of cyc10phane containing natural products and total
syntheses that employ cyc10phane intermediates has stimulated renewed interest in their
asymmetric preparation and planar chirality. A synthetic approach is proposed towards
the total synthe sis of longithorone C. This [12]paracyclophane quinone is a member of a
group of macrocyc1ic farnesylated quinones isolated from the tunicate Aplidium
longithorax. The development of an efficient preparative method will be discussed for
the macrocyc1ic ansa-bridge by ring-c1osing olefin metathesis (RCM) in racemic form.
The investigation of various fluorinated auxiliaries as novel gearing elements and their
effect on macrocyc1ization is presented. The mechanism by which these gearing
elements function has been studied by molecular modeling. Copper-catalyzed Grignard
reactions have been optimized in order to selectively couple prenylated side chains to
aromatic halides. Finally, a variety of olefin metathesis catalysts were studied for the
preparation of a [12]paracyclophane containing three stereodefined tri-substituted olefins.
Key Words: gearing elements, longithorone C, paracyc1ophanes, ring-c1osing olefin
metathesis (RCM).
V111
Résumé
Le nombre grandissant de produits naturels contenant des cyclophanes ou de
synthèses totales utilisant des cyclophanes comme intennédiaires a stimulé un nouvel
intérêt pour la synthèse asymétrique de ces molécules possédant une chiralité plane. Une
approche synthétique vers la synthèse totale de la longithorone C a été proposée. Cette
quinone, possédant un [12]paracyclophane, est membre d'un groupe de quinones
macrocycliques contenant une chaîne ressemblant à famesol dans leur squelette et a été
isolée à partir de Aplidium longithorax. Le développement d'une méthode efficace pour
la préparation de ce macrocycle contenant un pont-ansa par métathèse d'oléfines par
fenneture de cycle dans sa fonne racémique sera discuté. L'investigation d'une variété
d'auxiliaires fluorés comme nouveaux éléments directeurs et leur effet sur la
macrocyclisation seront présentés. Le mécanisme par lequel ces éléments directeurs
fonctionnent a été étudié par modélisation moléculaire. Une réaction de Grignard
catalysée par le cuivre a été optimisée dans le but d'installer les châmes latérales
allyliques à l'halogénure aromatique. Finalement, une variété de catalyseurs de
métathèse d'oléfines a été étudié pour la préparation d'un [12]paracyclophane contenant
trois oléfines trisubstitués stéréodéfinies.
Mots clés: éléments directeurs, longithorone C, paracyclophanes, métathèse d'oléfine par
fenneture de cycle (RCM).
IX
Acknowledgements
1 would like to express my sincere gratitude to Professor Shawn K. Collins for
giving me the opportunity to work in his group. He is an excellent teacher who has
guided me throughout my degree.
1 would also like to thank past and present members of the Collins group who
have contributed to the research projects that 1 have been involved with, namely, Pierre
André Fournier and Alain Grandbois.
Thanks to the assistance provided by Dr. Min Tan Phan Viet, Sylvie Bilodeau,
and Cedric Malveau for the help they have provided in acquiring sorne of the NMR data
that have been presented here, as weIl as for their patience in answering my questions.
Thanks to Alexandra Furtos, Karine Venne, and Dalbir Sekhon for the help in
acquiring mass spectral data, for the patience in answering my questions, and for letting
me know when my lab coat needed replacement.
To aIl my mends who have made this such a pleasurable experience: thanks for
the good times!
Last but not least, 1 would like to thank my family. My parents and two sisters
have al ways supported aIl of my endeavors, and my lovely wife Araks Malkhassian for
the patience through aIl those long hours of work. 1 am grateful for their unconditional
love and support. 1 would not have been able to do this without you.
Figure 1
Figure 2
Figure 3
Figure 4
Figure 5
Figure 6
Figure 7
Figure 8
Figure 9
Figure 10
Figure Il
Figure 12
Figure 13
Figure 14
Figure 15
Figure 16
Figure 17
Figure 18
x
List of Figures
The Longithorone Family ofNatural Products. ...... ...... ... ... .... .......... 3
Retrosynthetic Analysis ofLongithorone A Involving Molecular and
Transannular Diels-Alder Reactions..... .................................................. 4
Retrosynthetic Analysis of Longithorone A Involving Enyne
Metathesis.. ... ... ..... ....... ...... ...... .......... ............... ... ... ..... ..... 5
Intramolecular and Intermolecular Enyne Metathesis Reactions.... . . . . . . . . 6
Retrosynthetic Analysis of Longithorone B........ ........ .......... ......... 12
Structural Similarities Between Longithorone A, B, and C........ ......... 16
Initial Retrosynthetic Analysis of Longithorone C. ... ....... ...... ..... ..... 17
Retrosynthetic Analysis ofa Model System using cis-Farneso162.. ..... 26
Retrosynthetic Analysis of Revised Model System using
trans-Farneso165. ....... ............... ......... .............. .............. ...... 26
Revised Model System.......................................................... 32
Stereocontrol During Triflation of p-Ketoester 81 using DMF as Solvent. 34
Proposed Model Study using Disubstituted Olefin 93.... ... ................ 39
Retrosynthetic Analysis of Longithorone C. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .. 43
Copper Catalyzed Grignard Reactions ... , ........................ ". ... ....... 46
Retrosynthetic Analysis using Copper Catalyzed Grignard Reactions.... 46
Magnesium-Halogen Exchange................... ............................. 47
Role of Copper Catalyst in Organomagnesium Cross-Coupling Reactions. 48
Proposed Synthetic Pathway for Copper Catalyzed Coupling of
Grignard Reagents ..... , ........................................ , . . . .. . . . . . . . . . . .. 48
Figure 19
Figure 20
Figure 21
Figure 22
Figure 23
Figure 24
Figure 25
Figure 26
Figure 27
Figure 28
Figure 29
Figure 30
Figure 31
Figure 32
Xl
Regiocontrol in Copper Catalyzed Grignard Reactions. ... ... ....... ... .... 53
Formation of cr-Allyl Copper Species 129 with Acetate 126..... ............ 54
Formation of 1l'-Allyl Copper Species 130 with Acetate 126....... ........ 55
Stereochemistry of Relay Side Chain.. ........ ... ... .......... ......... ....... 58
Quadrupolar Interactions using a CF3-Based Gearing Element............ 63
Results of Higher Drder DFT Calculations on Model System (Red color
denotes areas of increased electron density due to fluorine atoms)........ 64
Results of Higher Drder DFT Calculations on AH Carbon System (Red
color denotes areas of increased electron density due to fluorine atoms). 65
Model System used in Determining the Ideal Gearing Element. . .. . . . . . . . . 66
Retrosynthetic Analysis for the Model System used for Determining the
Ideal Gearing Element. .. .. . . . . .. .. . . . . .. . .. . .. . ... .. .. . .... .. . .. . ... .. . .. . .. . ... 67
Retrosynthetic Analysis for Longithorone C. ... .... ...... ..... .......... .... 72
Proposed Reaction Steps for the Completion of
Longithorone C.................................................................... 76
Proposed Mechanism for Dxidation of Benzaldehydes to Phenols.. .. . ... 78
Proposed Chiral Catalysts for the Asymmetric Synthesis of
Longithorone C.................................. ................................. 79
Proposed Chiral Auxiliaries for the Asymmetric Synthesis of
Longithorone C......................... ... ............................... .. ...... 79
Xll
List of Schemes
Scheme 1 Studies of Enyne Metathesis in Macrocyc1ization Reactions..... ............ 7
Scheme 2 Preparation of Enyne Precursor 3 ..................................... , . .. . .. . . 8
Scheme 3 Enyne Metathesis using an Atropisomeric Control Element............... 10
Scheme 4 Removal of the Atropisomeric Control Element.. .............. " .. , . .. . .. . . 10
Scheme 5 Enyne Metathesis Lacking an Atropisomeric Control Element. .. , . . .... ... Il
Scheme 6 Additive Effect on the Transition States of the [3,3]-Sigmatropic
Rearrangements.. .. . .. . .. . .. ... ... ... . .. .... .. . .. . .. . .. . .. . .. . .. . .. . . . . . . . . . . . . . .. 13
Scheme 7 Preparation of [12]Paracyc1ophanes by Friedel-Crafts Alkylation......... 14
Scheme 8 Initial Attempts in Forming [12]Paracyclophanes. ... ....... ................. 18
Scheme 9 Benzylesters as Gearing Elements. ... ... .... ..................... ............. 19
Scheme 10 Pentafluorobenzylesters as Gearing Elements................. .......... ..... 19
Scheme Il Energy Minimization using AMI and MP2 Methods........... ............. 20
Scheme 12 Determining the Ideal Site for Metathesis ........................... , .... .... 21
Scheme 13 Attempted Formation of a Tri-substituted Olefin by RCM................. 22
Scheme 14 Relay-Ring Closing Metathesis............................... ...... ........... 23
Scheme 15 Model Study Incorporating Relay-Ring Closing Metathesis.. ..... ... ..... 24
Scheme 16 Synthesis ofPentafluoro-2,5-dihydroxybenzoate 60 via Mitsunobu
Chemistry........... ........................... .................................... 27
Scheme 17 Synthesis ofPentafluoro-2,5-dihydroxybenzoate 60 via an Alkylation
Procedure ....................................................... , .............. .... 28
Scheme 18 Synthesis of Allylic Side Chain 61.... ...................... ......... .......... 29
Scheme 19 Alkylation using trans,trans-FarnesoI65 and Allylic AlcohoI61.... ..... 30
xm
Scheme 20 RRCM ofMacrocycle 63.............................................. . .. ....... 31
Scheme 21 Gibbs' Synthesis of cis,trans-FarnesoI62........ ............... ...... ....... 33
Scheme 22 Synthesis of cis-Famesol 62 using Geranylacetone 86...................... 34
Scheme 23 Synthesis of Geranylacetone 86................................................ 33
Scheme 24 Preparation of cis,trans-Fameso162 from Geranylacetone 86. ............ 36
Scheme 25 Alkylation using cis,trans-Fameso162 and Allylic Alcohol61. .... ....... 37
Scheme 26 RRCM ofMacrocycle 58.. ...................................................... 38
Scheme 27 Preparation of Olefin 93 Following Modified Corey Procedure........... 39
Scheme 28 Alkylation using Side Chain 93 and Allylic AlcohoI61.................... 41
Scheme 29 RRCM ofModel System 94.................................................... 42
Scheme 30 Negishi Coupling using Prenylbromide 102.................................. 44
Scheme 31 Negishi Coupling using Iodide 80............................................. 45
Scheme 32 Negishi Coupling using Alkyl Bromide 107................ ............. ...... 45
Scheme 33 Synthesis ofi-Propyl-2,5-diiodobenzoate 120.... ........................... 50
Scheme 34 Synthesis ofBromide 125 and Acetate 126........ ........................... 52
Scheme 35 Optimized Reaction Conditions in Forming Aryl.iodide 124............... 56
Scheme 36 Formation of the Allylic Acetate 131 Derived from cis-Olefin 93........ 69
Scheme 37 Optimized Reaction Conditions in Forming Ole fin 132.......... ........... 69
Scheme 38 Synthesis of Acetate 136 and Stereochemistry ofOlefin 153.............. 59
Scheme 39 Preparation of Bistrifluoromethyl Benzyl Ester 139........................ 61
Scheme 40 Improved Bistrifluoromethyl Gearing Element on Model System..... .... 62
Scheme 41 Synthesis of Bromide 161........................................................ 67
XIV
Scheme 42 Synthesis ofPentafluorobenzyl ester 155 and Trifluoromethylbenzyl
ester 156. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 68
Scheme 43 NOESY ofMacrocycle 157.............. .... ................................... 70
Scheme 44 Synthesis ofMacrocyclization Precursors 174 and 176..................... 74
Scheme 45 Optimum Reaction Conditions for RRCM on Real System................ 90
Table 1
Table 2
Table 3
Table 4
xv
List of Tables
Effeet of Ester Group, Halide, and Grignard on Mg-X exehange......... 49
Optimizing y / cr Produet Ratio. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .. 51
RRCM ofModel Compound [12]Paraeyelophane 157 and 158. ........... 69
RRCM in forming Cyc10phanes 173 and 177.............. ................... 75
XVI
Abbreviations
Ac acetyl
ACN acetonitrile
Ar aryl
COSY correlation spectroscopy
d doublet
dba dibenzylideneacetone
DCM dichloromethane
dd doublet of doublets
DIAD isopropyldiazodicarboxylate
DIBAL-H diisobutylaluminum hydride
DMF dimethylformamide
dppf (diphenylphosphino )ferrocene
dt doublet of triplets
ee enantiomeric excess
eq equivalent
FePc iron tetrasulfophthalocyanine
g gram
GC gas chromatography
h hour
HM half-metathesis
HMPA hexamethylphosphoramide
HRMS high resolution mass spectrometry
XVll
Hz hertz
HWE Homer-Wadsworth-Emmons
imid. imidazole
J coupling constant
kcal kilocalorie
KHMDS potassium hexamethyldisilazide
m multiplet
mm minute
mL milliliter
mol mole
mmol millimole
NBS N-bromosuccinimide
NMP N-methylpyrrolidone
NMR nuc1ear magnetic resonance
NOESY nuc1ear overhauser enhancement spectroscopy
PG protecting group
ppm parts per million
py pyridine
q quartet
RCM ring-c1osing olefin metathesis
RRCM relay ring-c1osing metathesis
r.t. room temperature
s singlet
XVlll
t triplet
TBAF tetrabutylammonium floride
TBDMS tert-butyldimethylsilyl
TBDPS tert-butyldiphenylsilyl
TFA trifluoroacetic acid
TLC thin layer chromatography
UV ultraviolet
Chapter 1:
Introduction to the Longithorones: Paracyclophane Natural
Products
This chapter will focus on the longithorone family of natural products that contain
a paracyclophane core and the synthesis of these macrocyclic natural products.
1.1 - Ring Closing Olefin Metathesis as a Route to Strained Systems.
The olefin ring-closing metathesis (ReM) reaction has emerged as one of the
most powerful transforms in organic synthesis. 1 Indeed, the broad scope and reliability of
this reaction has greatly simplified the total synthesis of a wide variety of architecturally
complex natural and unnatural products.2 For example, Smith and co-workers developed
in 1999, the first total synthesis of cylindrocyclophane F, a unique natural product
possessing a 22-membered [7, 7]paracyclophane ring.3
Recent advancements in metathesis catalyst design have allowed chemists to re-
examine olefin metathesis as a route to systems bearing strained olefins embedded in
1 (a) Trnka, T. M.; Grubbs, R. H. Ace. Chem. Res. 2001,34, 18. (b) FÜfstner, A. Angew. Chem., Int. Ed. 2000,39,3012. (c) Nicolaou, K. c.; Bulger, P. G.; Sarlah, D. Angew. Chem., Int. Ed. 2005,44,4490-4527. (d) Grubbs, R. H. Handbook ofMetathesis, Three Volume Set 2003. 2 Fürstner, A; Langernann, K. J. Org. Chem, 1996,6/,8746-8749. 3 Smith, A B. III; Kozmin, S. A; Paone, D. V. J. Am. Chem. Soc. 1999, /2/, 7423-7424.
2
their skeletons.4 The variety of different catalysts that have been developed allows for
the possibility to select a catalyst having the necessary level of reactivity to access a
strained system but also to avoid catalysts which may be so reactive as to favor ring-
opening ofthe desired ring system.5
Ring closing metathesis (ReM) is now a standard method for the preparation of
both carbocyclic and heterocyclic ring systems in sizes ranging from five- and six-
membered cycles to macrocyclic compounds.6 Despite its popularity, the preparation of
certain molecules via olefin 'metathesis remains a challenge. In particular, strained ring
systems are problematic. In sorne cases, the ring opening process can be far more
thermodynamically favorable than ring closing while in other cases the system may be
too strained to permit cyclization.6 .::
A fascinating challenge for olefinmetathesis could be the preparation of strained
macrocyclic structures such as the longithorone natural products. In 1997, Schmitz and
co-workers isolated a group of nine ,famesylated quinones isolated from a tunicate
Aplidium longithorax that featured·new macrocyclic skeletons. Their carbon skeletons
resemble a farnesyl unit bridginga quinone at either the meta- or para-positions (Figure
4 (a) Scholl, M.; Ding, S.; Lee, C. W.; Gmbbs, R. H. Org. Lett. 1999, l, 953-956. (b) Ackermann, L.; Filistner, A.; Weskamp, T.; Kohl, F. J.; Herrmann, W. A. Tetrahedron Lett. 1999, 40, 4787-4790. (c) Huang, J. K.; Schanz, H.-J.; Stevens, E. D.; Nolan, S. P. Organometallics. 1999, 18, 5375-5380. (d) Jafarpour, L.; Schanz, H.-J.; Stevens, E. D.; Nolan, S. P. Organometallics. 1999, 18, 5416-5419. (e) Fürstner, A.; Thie1,-O. R.; Ackermann, L.; Schanz, H.-J.; Nolan, S. P. 1. Org. Chem. 2000,65,2204-2207. (1) Collins, S. K. J. Organomet. Chem. 2006, 691, 5122-5128. 5 Tang, H.; Yusuff, N.; Wood, J. L. Org. Lett .. 2001, 3,1563-1566. 6 (a) Paquette, L. A.;. Basu, K.; Eppich, J. C.; Hofferberth, J. E. He/v. Chim. Acta 2002,10,3033-3051. (b) Deiters, A.; Martin, S. F. Chem. Rev. 2004,5,2199-2238. (c) Nakamura, 1.; Yamamoto, Y. Chem. Rev. 2004,5,2127.-2198. , .
3
1).7 To date, the only biological adivityreported for these marine compounds pertains to
longithorone A. 8
longlthorone J longithorone K longlthorone 1
o
longlthorone B longlthorone C longithorone A
Figure 1 - The Longithorone Family' or"Natural Products.
lU l'· ,.:!
1.2 - Synthesis of Longithorone A.
1.2.1 - Introduction and Synthetic Challenges.
In 2002, Shair and co-workers reported an elegant synthesis of the cytotoxic
marine natural product longithorone A, based on the original proposed biosynthesis by
Schmitz and co-workers.9,10 The Shair group proposed the following retrosynthetic
J:
analysis comprised of both intermo.1~C,IJJ.ar . and transannular Diels-Alder reactions in the
• 1 ... ""
7 Fu, X.; Hossain, B.; Schmitz, F. J.; van der,Helm, D. J. Org. Chem. 1997,62,3810-3819. 8 For· information on the biological activity oflongithorone A, see: (a) Fu, X.; Ferre ira, M. L. G.; Schmitz, FJ. J. Nat. Prad. 1999,.62, 1306-1310. (b) Davidson, B. S. Chem. Rev. 1993,93,1771-1791. (c) Faulkner, D. J. Nat. Prad. Rep.1998, /5, .113:158. . 9 Layton, M. E.; Morales, C. A; Shair, M. D. J. Am. Chem. Soc. 2002, /24, 773-775. 10 Fu, x.; Hossain, M. B.; van Der Helm, D.; Schmitz, F. J. J. Am. Chem. Soc. 1994, //6, 12125-12126.
4
presence of two macrocyc1ic ring systems which are strained and extremely rigidified
(Figure 2).
Diels-Alder
o 1 > --~-'-':: 1 -_ h F
0"" ~ Q.. 0
longithorone A 2
Figure 2 - Retrosynthetic Analysis of Longithorone A Involving Molecular and Transannular Diels-
AIder Reactions.
Both the macrocyc1es 1 and 2 are tied across quinone ring systems, where the
hindered rotation of the macrocyc1e results in atropisomerism. It was believed by the
Shair group that the absolute and relative stereochemistry of the stereocenters found in
the C, D, and E ring systems of longithorone Amay be derived from the planar chirality
of both 1 and 2 (Figure 2). It was therefore necessary to prepare enantioenriched
paracyc10phanes 1 and 2 possessing a 1,3-diene functionality embedded in the ansa-
bridge. Consequently, Shair and co-workers envisioned using a macrocyc1ic enyne
metathesis reaction to install the necessary diene functionality (Figure 3).
5
A(1,3) Straln
("""" Ene-Yne Metathesls MeO?" :-O:: OTBS ~'=:--_
========:» "H ~ TBSO
/, Il ~ OTBS
(""
if MeO"";-_" OTBS
OTBS
/, Il ~ OTBS
4
A(1 ,3) Straln
~ (Me~"'''?- ~ OTBS
~ F _ Ene-Yne Metathesis TBSO "H o ..§... O· ;, /,
~ Il ~ 2 3
Figure 3 - Retrosynthetic Analysis of Longithorone A Involving Enyne Metathesis_
Although dilution, templates and slow-addition techniques can improve some
macrocyclizations, Il typically chemists resort to the installation of conformational control
elements to favor cyclization. 12 Most often, this takes the form of a large substituent on
the methylene group adjacent to the aromatic moiety. Consequently, in the Shair
synthesis, a t-butyldimethylsilyloxy (OTBS) group was strategically placed adjacent to
the aromatic ring of enynes 3 and 4 as a conformational control element. Minimization
of the A 1,3 strain was believed to be responsible for the gearing of the alkenyl and alkynyl
side chains (Figure 3).
Il Chuchuryukin, A. V.; Dijkstra, H. P.; Suijkerbuijk, R. 1. M.; van Klink, G. P. M.; Mills, A. M.; Spek, A. L.; van Koten, G. Angew. Chem., Int. Ed. 2003, 42, 228-230. 12 Sello, 1. K.; Andreana, P. R.; Lee, D.; Schreiber, S. L. Org. Lett. 2003,22,4125-4127.
6
1.2.2 - Preparing [12]Paracyclophanes by Enyne Metathesis.
Relatively little use has been reported in the literature on macrocyc1ization via
enyne metathesis. 13 However, it is known that intramolecular enyne metathesis affords
1,2-disubstituted dienes (5) and intermolecular enyne metathesis reactions afford 1,3-
disubstiuted dienes (6) (Figure 4).14
~ V)O-4
1,2-disubstituted diene 5
•
1,3-disubstituted diene 6
Figure 4 - Intramolecular and Intermolecular Enyne Metathesis Reactions.
The Shair group used model structures to determine the optimum enyne
metathesis conditions. 15 It was found that under an ethylene atmosphere, ethylene-yne
cross metathesis of 7, 8, and 9 occurs first using catalyst 14, affording a terminal 1,3-
diene followed by terminal olefin-olefin metathesis macrocyc1ization, affording the
desired 1,3-disubstituted olefins 10, 11, and 12. No 1,2-disubstiuted olefin 13 was
observed (Scheme 1).
13 Hensen, E. c.; Lee, D. J. Am. Chem. Soc. 2003, 125, 9582-9583. 14 Mori, M.; Kitamura, T; Sato, Y. Synthesis 2001, 654-664. 15 Morales, C. A.; Layton, M. E.; Shair, M. D. Proc. Nat/. Acad. Sei. 2004, lOI, 12036-12041.
OR 0l ~O~ ~V 7: R = Me 8: R= TBS 9: R= H
" Mes-NyN'Mes
CI,I Ru~
Cl .... 1 Ph
PCY3
14
Grubbs Il (10 mol %)
ethylene (1 atm) DCM, 45°C, 24h
..
10: R = Me, 92% 11: R = TBS, 97% 12: R = H, 71%
1 ,3-d isubstituted
Scheme 1 - Studies of Enyne Metathesis in Macrocyclization Reactions.
1.2.3 - Installation of the Atropisomeric Control Element.
7
13 not observed
1,2-disubstituted
The enantioselective synthesis of enyne 3 was achieved following a nine-step
reaction sequence (Scheme 2).15
~ TlPS 1
16 +
Br
Meo~
Mr Br OMe
15
TIPS:xl.
Zn, Pd(PPh3)4 MeO '-"::
-----.. 1 THF, 23
cC BOOM
98% r 17 e
1. n-BuLi, El20, -7ac C
2.DMF 94%
TIPS---==-----
.. H
o 18
j 1. BBr3, DCM
2. TBSOn, i-Pr2NEI DCM
88% over two steps
TIPS == t-BuU, ZnBr2 TIPS == TMS ~ TBSO
1. TBAF, THF 2. 5% Pd/BaS04
quinoline, H2 3. TBAF, THF
OH
4. TBSCI, Imid., DMF
63% yleld over four steps
21
f MeO .;;:-_ '" f""'"
TBSO
Il ~ 3
OMe
OTBS
h
(1 S,2R)-N-melhylephedrine .. PhMe,OcC
91% yleld, 95% ee
TMS~I
20 \
Scheme 2 - Preparation of Enyne Precursor 3.
H OMe
19
8
Pd-mediated cross coupling ofvinyl-iodide 16 and a benzylic zinc reagent derived
from 15 afforded aromatic bromide 17 in 98% yield. Formylation of the aromatic
bromide 17 with n-BuLi and DMF delivered aldehyde 18 in 94% yield. Selective
demethylation was achieved by treating aldehyde 18 with BBr3 followed by silylation
with TBSOTf to afford silyl ether 19 in 88% yield over two steps. Enantioselective
alkylation of silyl ether 19 using a bromozinc reagent derived from 20 in combination
with the lithium alkoxide of (lS,2R)-N-methylephedrine provided benzylic alcohol 21 in
9
91 % yield and in 95% ee. Benzylic alcohol 21 was treated with TBAF where the
simultaneous deprotection ofboth the>TMS and TBS group was carried out. Subsequent
Lindlar·hydrogenation of the terminalacetylene, TBAF promoted removal of the TIPS
group and silylation of the phenol and benzylic alcohol with TBSCI afforded enyne 3 in
63% yield over four steps.
1.2.4 - Enyne Metathesis Macrocyclizatlon using an Atropisomeric Control Element.
Both enyne 3 and 4 were taken up in CH2Clz and treated with Grubbs first
generation catalyst 22 under an ethylene atmosphere to afford the desired macrocyc1es 23
and 24. High dilution conditions and extended reaction times were necessary in order to
obtain the macrocyc1ic products. Despite optimizing the conditions, enyne 4 cyc1ized to
afford macrocyc1e 23 in only 31 % yield. Furthermore the E:Z ratio was 3.9:1 and the
atropdiastereoselectivity was modest at 2.8:1. It is important to note that the nature of the
substrate controlled the resulting E:Z ratios and atropdiastereoselectivity.15 For example,
when enyne 3 was subjected to nearly identical reaction conditions, the yield of
macrocyc1e 24 was 42%. However, both the E:Z ratio and atropdiastereoselectivity had
increased to greater than 25:1 in the formation of24 (Scheme 3).
~" ,i
OTBS
rMe'~'''''7 "-': OTBS
TBSO "H
/, Il ~
3
PCY3 CI,I
Ru=--CI"" Ph
PCY3
Grubbs 1 (30 mol %l 22 ethylene (1 atm), DCM, 45°C
[M] = 3.10-3, 40h
31%
2.8: 1 atropdiastereoselectivity
3.9: 1 E: Z
1. Grubbs 1 (30 mol %l 22
ethylene (1 atm), DCM, 45°C
[M] = 3 • 10-3 , 21h .. 2. TBAF, THF
42% > 25: 1 atropdfastereoselectfvity
> 25: 1 E: Z
Scheme 3 - Enyne Metathesis using an Atropisomeric Control Element.
10
23 OTBS
24
The removal of the atropisomeric control element was achieved by hydride
reduction of the benzylic silyloxy group using TFA and NaBH3CN, followed by
silylation of the phenol to afford paracyc10phane 25 in 75% yield (Scheme 4).15,16
24
2. TBSCI, Imid. 75%
Scheme 4 - Removal of the Atropisomeric Control Element.
25
Although Shair and co-workers demonstrated that the formation of macrocyc1es
such as [12]paracyclophanes was possible using RCM, these macrocyc1ization reactions
16 Kursanov, D. N.; Parnes, Z. N. Russ. Chem. Rev. 1969,38,812-821.
11
proved to be difficult due to ring strain and no cyclization was observed in forming 27
without the pendant OTBS group in 26 (Scheme 5).
22
tM:~j'''';;:'' -.;:: OMe Grubbs 1 (30 mol %)
JI'"
• Mixture of Products
Scheme 5 - Enyne Metathesis Lacking an Atropisomeric Control Element.
1.2.5 - Conclusion.
Shair and co-workers have demonstrated the first examples of enyne metathesis in
forming macrocyclic ring structures such as [12]paracyclophanes. These results
demonstrate the ability of substituted methylene groups to act as conformation
controlling groups, and to control the transfer of their chirality to atropisomeric centers.
Although the Shair group successfully applied this methodology towards the asymmetric
total synthesis of longithorone A, large amounts of catalyst were necessary as weIl as
extended reaction times, high dilution and the presence of an ethylene atmosphere in
order to accomplish macrocyclization. Although the control element was easily removed,
the installation process involved difficult reaction steps, and afforded paracyclophanes 23
and 24 in low yields, and variable diastereoselectivity.
12
1.3 - Synthesis of Longithorone B.
Longithorone B is a [12]paracyc1ophane containing a macrocyc1ic structure based
on a famesyl unit, bridging a benzoquinone at the para-position. The macrocycle is
composed of two trans, and one cis double bonds. The hindered rotation of its
macrocyclic structure about the quinone core affords this natural product an element of
planar chirality. The synthetic challenge in synthesizing longithorone B is directly linked
to the difficulty in forming the highly substituted, planar chiral macrocyc1e. These
synthetic challenges had inspired Tadahiro and co-workers to develop an efficient
synthesis of the macrocyc1ic ring structure of longithorone B, by way of intramolecular
Friedel-Crafts alkylation reaction forming the ansa-bridge (Figure 5).17
longithorone B
1. Hydrolysis >
2. CAN Oxidation
Friede/-Crafts
Reduction
HO) ~o '(40~ '<=:: ==
~"O~ PivO
Figure 5 - Retrosynthetic Analysis of Longithorone B.
17 Tadahiro, K.; Kentaro, N.; Masahiro, H. Tetrahedron Lett. 1999,40, 1941-1944.
13
1.3.1 - [3,3]-Rearrangement in Forming Ortho-Allyl Phenol 31.
[3,3]-Sigmatropic rearrangements of aIl yI aryl ethers provide convenient access to
ortho-allyl phenols. 18 However, one of the challenges encountered by the Tadahiro group
was in controlling the E:Z ratios of the products. 17 They determined a strong dependence
of the rearrangement reaction on the reaction conditions (Scheme 6).
OEt
OMe
trans-product 30
D~ DEI ~
EtO o
28 V OMe
AI20 3
xylene. !J., 36h 71% conversion
EtO
~*~ 0 .l'''~ MeO il -- ÀI
29-E 29-Z
1: 4.3 E: Z
o
---
OCOCMe3
OMe o
OEt
cis-product 31
Scheme 6 - Additive Effect on the Transition States of the [3,3)-Sigmatropic Rearrangements.
The rearrangement of28 afforded a 71 % conversion with a low 1 :4.3 E/Z product
ratio. The proposed mechanism inyolved the coordination of the Lewis acid with the
18 Krohn, K.; Bernhard, S. Synthesis 1996, 6,699-701.
14
oxygen atom of phenyl ether 28 forming the two possible transition states 29-E and 29-Z.
In the absence of a Lewis acid, 29-E was the major intermediate leading to the formation
of the trans-olefin 30. In the presence of a Lewis acid su ch as Alz03 or Si02, the Al or Si
atoms complex with the oxygen atom of the ether linkage, increasing the repulsion
between it and the side chain at the equatorial position of transition state 29-E, leading to
the formation of the desired Gis-phenol 31 through transition state 29-Z.
1.3.2 - Intramolecular Coupling of the Farnesylated Side Chain by Friedel-Crafts
Alkylation.
The intramolecular coupling reaction was examined using three types of protected
alcohols (32, 33, and 34) derived from phenol 31 and the ester at the terminal position of
the famesyl chain was reduced to the alcohol using DIBAL-H. The intramolecular
coupling reaction was achieved by way of the Friedel-Crafts alkylation at the C-1
position of the farnesyl moiety in the presence of the acids Hf(OTf)4 and LiCI04 in
CH2Clz (Scheme 7).
OR
Hf(OTf)4
liCI04 • DCM
35 36 37
32: R =TBDMS 8% 1:8 64% traces
33: R = Bn 0%
34: R = COCMe3 --------_ .. 78% 6: 1 13% traces
Scheme 7 - Preparation of [12IParacyclophanes by Friedel-Crafts Alkylation.
15
When silyl ether 32 was treated, with Hf(OTf)4 in the presence of LiCI04, a
mixture of 35 and 36 was obtained, where HPLC purification afforded macrocyc1e 36 in
64% yield. The predominant meta-coupling with respect to the methyl ether of silyl ether
36 was believed to be caused by the,electron-withdrawing nature of the TBDMS group.
When benzyl ether 33 was treated under the same reaction conditions, a complex mixture
was detected without formation of any product. When pivilate 34 was subjected to the
coupling reaction under the same conditions, the desired macrocyc1e 35 was isolated in
78% yield. Steric hindrance as weH' as the electron-withdrawing nature of the pivaloyl
grollP of 34 was believed to control the reaction, leading to the desired para-substituted
(with respect to the macrocyc1ic ring structure) macrocyc1e 35 as the major product.
Hydrolysis of macrocyc1e 35 with KOH; in MeOH followed by CAN oxidation lead to the
formation of longithorone B in 58% yield,over two steps.
1.3.3 - Conclusion.
Although the Tadahiro group demonstrated an efficient synthesis of the
[12]paracyc1ophane longithorone B, the [~,3]-rearrangement as weIl as the intramolecular
cye1iz~tion proved difficult. Complete conversion was never achieved in the
rearrangement step and the Friedel-Crafts alkylation afforded a mixture of ortho- and
meta-substituted products.
In light of the work performed by both the Tadahiro and Shair groups, it is c1ear
that. there is a need for new and more efficient methods for forming highly hindered,
planar chiral macrocyc1i~ ring structures.
16
1.4 - Longithorone C: A Representative. Compound.
1.4.1 - Synthetic Challénges and Goals ..
Longithorone C, a member of a family of nine famesylated quinones, features a
macrocyclic skeleton derived from. a famesyl unit bridging a quinone at the para-
position. Longithorone C a1so exhibit~ atFopisomerism due to the hindered rotation of the
macrocyclic ring structure. Its structural· features resemble those of 10ngithorone B and
the two monomers that make up longithorone A (Figure 6).
longlthorone B longlthorone A
longlthorone C
Figure 6 - Structural Similarities Between Longithorones A, B, and C. .' .
1 .,'
The synthetic challenge associated with the synthesis of longithorone C was
linked to the difficulty in forming the highly strained, planar chiral macrocycle that l'
contains three stereodefined tri-substituted olefins. It has been reported that heating
longithorone C at reflux for 7 days in toluene resulted in no racemization of its
17
macrocyc1ic structure.7 These synthetic challenges inspired our group to develop an
efficient synthesis towards longithorone C using ring c10sing olefin metathesis (RCM) in
forming the ansa-bridge (Figure 7).
/RCM ,
metathesis/ oxidation
;. ~:~ OPG
Me
Longithorone C
Figure 7 - Initial Retrosynthetic Analysis of Longithorone C.
The ultimate goal would be to install the planar chirality in this molecule via an
enantioselective ole fin metathesis reaction using a chiral catalyst. Since the formation of
[12]paracyc1ophanes had been achieved using enyne metathesis, it was therefore
necessary to determine whether RCM could be used in forming the macrocyc1ic ring
structure of longithorone C. Other synthetic variables to optimize included determining
the ideal site for macrocyc1ization, and stereoselectively forming the tri-substituted
olefins within the macrocyc1e.
1.4.2 - Forming [12]Paracyclophanes: A Model Study.
[12]Paracyc1ophanes are relatively strained macrocyc1ic structures. Chiral
gearing elements such as the benzylic silyl ether group used by Shair and co-workers
18
have been employed In directing macrocyc1ization processes to form
[12]paracyc1ophanes. However, since the ultimate goal would entail using asymmetric
olefin metathesis, the substituted methylene gearing elements located on the side chains
would be undesirable (i.e. leading to diastereoselective cyc1ization in place of an
enantioselectively cyc1ization). Yassir EI-Azizi, a member of the Collins group,
investigated whether RCM could be used to access strained macrocyc1ic systems in the
absence.of gearing elements on the side chains (Scheme 8).19
OH HO~ H.Y
h~~ 39 a 22
~ PPh3, DIAD
~ Grubbs 1 (10 mol %)
~ ~
MeO Il PhMe, 8, 1.5h
MeO Il DCM, 8, 15h
MeO Il MeO ~ 50- 90% [M] = 0.4 * 10-3
OH O~ 26% O~O
38 40 41
Scheme 8 - Initial Attempts in Forming [121Paracyclophanes.
Unfortunately, numerous attempts ta cyc1ize vanous substituted
[12]paracyc1ophanes using Grubbs first generation catalyst 22 lead to the preferential
formation of the dimer 41, demonstrating the importance of controlling the orientation of
the side chains. It was believed that the use of a benzyl ester would allow the formation
of the "stacked" conformer 43-8 in solution, which in tum would "gear" the two side
chains together through steric bias facilitating macrocyc1ization (Scheme 9).
19 EI-Azizi, Y.; Schmitzer, A.; Collins, S. K. Angew. Chem., ln!. Ed. 2006, 6, 968-973_
19
~~ ~4 o~
-~~4 0
B~ 22
o~~ ~A Grubbs 1 (10 mol %) ..
DCM.1.\.15h Bn02C /; Bn02C ~
0 o~ 26%
O<o:~ oo~ O~O
42 "slacked" 44
43-0 43-5
Scheme 9 - Benzyl Esters as Gearing Elements.
Despite varying the concentration and mode of addition, the use of the benzyl
ester did not form the desired macrocyclic product, and once again the dîmer was
obtained as the major product. Consequently, a strategy employîng pentafluorophenyl-
phenyl interactions as a novel gearing element to favor the desired intramolecular
macrocyclization was envisioned (Scheme 10).
~4 o 22 o Grubbs 1 (10 mol %~
CaFsHzCOiH DCM. L'.. 15 h
41% o o~
~4 ~
F o~ ~F~Fh F~O~ FOOO~
/~j\F "open" "stacked" F 46-0 46-5
45 47
Sc he me 10 - Pentafluorobenzylester as a Gearing Elements.
When olefin 45 was treated with catalyst 22, cyclophane 47 was isolated in 41 %
yield. Rence the formation of [12]paracyclophanes by RCM was made possible using
novel gearing elements such as the pentafluorobenzyl ester 45. The quadrupolar non-
20
bonding interactions between pentaflp.oroarenes and arenes are the result of the
orthogonal densities of aromatics and pentafluoroaromatics.20 These interactions have
spiked significant interest in medicinal chemistry and materials science due to the
predictable preference for the face-to-face stacking with the aromatics in the solid state.21
However, relatively littIe use of these non-bonding interactions has been reported in
catalysis.22 The pentafluorobenzyl ester 45 has been predicted through molecular
modeling to prefer the solution state conformation 46-8 to a much greater degree than 46-
o (Scheme Il).23
"open" 43-0 "stacked" 43-5
ÀHstaek - ÀHopen = -3.9 kcal/mol
~4 o F o~
F.too"'~ 1 \J4"
F ~ F "open" 46-0 F
Scheme 11 - Energy Minimization using AMI and MP2 Methods,z3
...
20 Brown, N. M. D.; Swinton, F. L. J. Chem.,Soc., Chem. Comm. 1974, 19,770-771. 21 Mann, E.; Mahia, J.; Maestro, M. A.; Hetradon, B. 1. Mol. Struct. 2002,641,101-107.
"stacked" 46-5
22 POI1;Zini, F.; Zagha, R.; Hardcastle, K.; Siegel, J. S. Angew. Chem., fnt. Ed. 2000, 39, 2323-2325. 23 For a complete list ofmethods and results used in the molecular modeling studies see: Collins, S.; EIAzizi, Y.; Schrnitzer, A. R. 1. Org. Chem. 2007, 72,6397-6408.
21
1.4.3 - Determining tbe Optimal Site for Metatbesis along tbe Ansa-Bridge and
Formation of Tri-substituted Olefins by ReM.
Previously it had been demonstrated by Yassir El-Azizi that moving the site of
metathesis c10ser to the aromatic core resulted in a higher reaction yield when forming
[12]paracyc1ophanes via olefin metathesis (Scheme 12).24
Mk& 22 Grubbs 1 (10 mol %) Ml DCM,~, 15 h
[M] = 0.5' 10.3
01 41% O~ooJ FO O~ 4":::
45 Il 47
ftf 22
Grubbs 1 (10 mol %) F 0
DCM,~, 15 h
~ [M] = 0.5 * 10.3
~ Ol 48% FO O~ ~ 0 0 3":::
48 49
Scheme 12 - Determining the Ideal Site for Metathesis.
When olefin 45 was subjected to metathesis conditions using catalyst 22 under
di lute conditions, macrocyc1e 47 was obtained in 41 % yield. When moving the site of
metathesis c10ser to the central arene in olefin 48, the reaction yield had increased from
41 to 48% yield un der the same reaction conditions, indicating that the site of metathesis
for the formation macrocyc1es should be performed c10ser to the aromatic core.
24 Collins, S. K.; EI-Azizi, Y. Pure Appl. Chem. 2006, 78, 783-789.
22
Our group subsequently attempted to prepare even more strained macrocycles
incorporating a stereodefined tri-substituted olefin similar to those present in
longithorone C (Scheme 13).19
Fi 22 Fi \ F FA
~A Grubbs 1 (10 mol %) »J ~~»J DCM, 6,15 h
64% F 0 0 F 0 0 OOF FOO 50 51 Not observed
Scheme 13 - Attempted Formation of a Tri-substituted Olefin by ReM.
Unfortunately, cyclization of olefin 50 led to the preferred formation of the dimer
51 and no macrocyc1ic product was isolated, ev en in the presence of the
pentafluorobenzyl ester. Recently, Hoye and co-workers had developed an efficient
method for forming highly substituted olefins by RCM called relay-ring c10sing
metathesis (RRCM) (Scheme 14).25
25 Hoye, T. R.; Jeffrey, C. S.; Tennakoon, M. A.; Wang, J,; Zhao, H. J. Am. Chem. Soc. 2004, 126,10210-10211.
23
:r5o
22 Grubbs 1 (10 mol %)
+-------------------,... DCM, 1'.,15 h
No Reaction
52
fVo)- 22 0 Grubbs 1 (10 mol %) ):50 ..
DCM, 1'.,15 h
53 59% 55
OR
or 22 0 Grubbs 1 (10 mol %) ):50 Yo ..
DCM, 1'.,15 h
54 59% 55
Scheme 14 - Relay-Ring Closing Metathesis.
In an attempt to cyclize olefin 52 containing both an electron deficient and a
substituted olefin, the catalyst 22 was not reactive enough to perform the desired
cyclization. When the olefins of the electron deficient (53) or hindered olefin (54) were
appended with a five carbon chain containing a terminal olefin the cyclization was now
successful, affording lactam 55 in 59% yield. The catalyst 22 can now react selectively
at the primary olefin of this "relay chain", producing a very fast intramolecular
cyclization kicking out a cyclopentene, thereby placing the catalyst onto the desired
olefin and allowing facile cyclization to the desired lactam 55.
Exploiting a relay ring closing metathesis protocol in tandem with the gearing
effect of the pentafluorophenyl-phenyl interaction, the cyclophane 57 was isolated in
53% yield on treatment of olefin 56 with catalyst 14 in CH2Ch at reflux (Scheme 15).19
Cyclophane 57 was isolated as a single isomer with the tertiary olefin in the Z
configuration.
14
Grubbs Il (10 mol %)
DCM,6, 16 h
53%
.. F~FA <YrY
F 0 0 ..,;:;
57
Scheme 15 - Model Study Incorporating Relay-Ring Closing Metathesis.
1.5 - Conclusion.
24
These studies suggest that pentafluorophenyl-phenyl interactions represent a
novel 7r-shielding element for application in face selective transformations,24 and with
potential for use as chiral auxiliaries. The following chapters will focus on the model
studies carried out in order to optimize the use of this gearing element for
macrocyclizations with the goal of achieving the total synthesis of longithorone C.
Chapter II:
Model Studies Directed Towards the Total Synthesis of
Longithorone C via Macrocyclic Olefin Metathesis
25
The goal of the following model studies was to study the formation of a
[14 ]paracyc1ophane by ring-c1osing olefin metathesis (RCM).
Il.1 - Retrosynthetic Analysis and Model Studies.
The following retrosynthetic analysis was devised in order to prepare a
macrocyc1e that contained three stereodefined tri-substituted olefins that would resemble
the macrocyc1ic ring of longithorone C (Figure 8).
26
F 0 ~ ~ ~ »lf f;J\' 'M
HO 62
c:=::::::> 1 ~ l' 1 Mitsunobu + ~ tF t-. ,/ t F t-.
F 0 0/ O~ 0 OH SO~ F 0 0 HO 1 ~ '~O . 59~ 58 :/ 60 61
ReM
Figure 8 - Retrosynthetic Analysis of a Model System using cis-Farnesol 62.
The target [14 ]paracyclophane 58 contained a macrocycle with three
stereodefined tri-substituted olefins, coupled to a bis-phenol with the pentafluorobenzyl
ester as functional group. Metathesis of olefin 59 should al10w for the successful
formation ofparacyclophane 58. In this manner, the two side chains 61, and 62 could be
coupled to bis-phenol 60 via the Mitsunobu reaction (Figure 8).
Unfortunately, cis,trans-farnesol 62 required for the formation of 58 in the correct
configuration, was not commercially available. As a result trans,trans-famesol 65 was
used in order to determine whether or not [14 ]paracycIophanes such as 63 could be
generated using the RRCM technique (Figure 9).
f""" Mitsunobu
HO~ F 0 FO~
fiJ »lf »A 65
~ ==:> I~ l' 1 t t-. ==:> ;, F t-.
F /'" Mitsunobu ...Y'
So~ F 00 F 0 0 ' o~ 0 OH HO 1
64~0~ 63 60 61
Figure 9 -Retrosynthetic Analysis of Revised Model System using trans-Farnesol 65.
27
II.2 - Synthesis of Pentafluoro-2,5-dihydroxybenzoate 60.
Installation of the pentafluorobenzyl ester gearing element was initially achieved
Via an esterification procedure. Pentafluorobenzyl ester 60 was formed via the
Mitsunobu reaction using pentafluorobenzyl alcohol 67 and 2,5-dihydroxybenzoic acid
66 with a slight excess ofPPh3 and DIAD in anhydrous THF. Diphenol 60 was obtained
in 46% yield as a white solid (Scheme 16).
F
~' OH F F OH F 0 I~
HoA ':4' ·M .tilt b, + HO 1: F
PPh3• DIAD
THF. 23°C. 10h ;, F ~ F
46% 0, 0, o OH F F 0 OH F 0 OH
66 67 60 68
Scheme 16 - Synthesis of Pentafluoro-2,S-dihydroxybenzoate 60 via Mitsunobu Chemistry.
The low reaction yield was a result of the formation of an undesired byproduct,
dialkyl 68. In addition, purification of pentafluorobenzylester 60 was very difficu1t; the
excess DIAD would always co-elute along with diphenol60.
In contrast to the Mitsunobu alkylation mentioned above (Scheme 16), alkylation
of 2,5-dihydroxybenzoic' acid 66 with pentafluorobenzyl bromide 69 proved to be much
more selective. Diphenol 60 was obtained following a simple column purification in
80% yield (Scheme 17).
HO~ •
o OH'
66
~,Jj F
69
-D-M---'F ,E=:':'~~"'-'~'---C,-1-0h'" il; 6 80% O~
F 0 OH
60
Scheme 17 - Synthesis of Pentafluoro-2,S-dihydroxybenzoate 60 via an Alkylation Procedure.
II.3 - Synthesis of the Allylic Alcohol 61.
28
Our group had previously demonstrated that relay nng closing metathesis
(RRCM) was crucial in forming tri-substituted olefins in macrocyclization?S A
retrosynthetic analysis for the preparation ,of 61 was devised following the precedent by ;-f,!'
Eisenreich and co-workers.26 ' The procedure was slightly modified using a silyl ether
protecting group rather than 'a tetrahydropyranyl protecting group. The volatility of the
products incorporating the latter protectirig group was frequently problematic. The
overall reaction yields in either case were identical (Scheme 18).
26 Amslinger, S.; Kis, K.; Hecht, S.; Adam, P.; Rohdich, F.; Arigoni, D.; Bacher, A.; Eisenreich, W. 1. Org. Chem. 2002, 67, 4590-4594.
o ~OH
70
TBDMSCI 0 ------.. ~OTBDM~. Imid, DMF, 23~C, 10h
71
T ris(triethyl)phosphonoacetate .. NaH, THF, O°C - 30min,
23°C - 10 h
74
Br~
o
EtO~ ~OTBDMS
72 E: Z 87:13
j DIBAL-H
DCM, -78°C, 2h
~o~ .. TSAF ~O---n ~OH THF, 23°C, 5h ~OTBDMS
NaH • HO~ THF, 23°C, 10h ~OTBDMS
30% over 5 steps 61 chromatographie separation 75 73
.,' , ." ,
Scheme 18 - Synthesis of Allylic Side Chain 61.
, ~ . -: , " \. ,
29
The hydroxyl'gr~up '~'fà-hydrdxyketone 70 was protected through etherification
with TBDMSCI affordi~g the silyl ether 71 in quantitative yield. The silyl ether 71 was
used crude in the following Homer-Wadsworth-Emmons reaction (HWE) using tris-
triethylphosphonoacetate and NaH ln' àrlhydrous THF, affording ester 72 as an 87/13
inixture of E/Z isomers. Due' to the difficult separation of the two isomers, the crude
mixture was simply carried over to the next reaction step. Reduction of the E/Z isomers
of ester 72 by DIBAL-H in CH2Ch afforded the allylic alcohol 73 with no
chromatographic purification necessary. Allylic alcohol 73 was alkylated using NaH and
allyl bromide in anhydrous THF affording silyl ether 75 that was immediately carried
over to the next reaction step. The TBAF deprotection of crude silyl ether 75 followed
by chromatographic purification afforded the desired allylic a1cohol 61 in a 30% yield
over five steps as a single trans-isomer according to the IH-NMR spectrum.
'1
30
II.4 - Macrocyclic Olefin Metathesis of Model System using trans,trans-Farnesol 65. . ., l~:-: . :
Olefin 76 was formed as the major product by Mitsunobu coupling of 0.5
equivalent of trans,trans-farnesol 65 to pentafluorobenzylester 60 using PPh3 and DIAD
in anhydrous THF at reflux (SchemJ~ 19) .
FO~V,yF, F ;IH
M~ 01
F 0 OH
60
. . '
HO~ 65 ..
PPh3, DIAD, THF, i'>, 10 h
.. ' 'lI
! 't' ,1
FO~
~ F 0 OH
7
j6 HOSO~
61 PPh3, DIAD, THF, i'>, 10 h
30% over two steps
FO~ F'0F ~ ~SO~
64
Scheme 19 - Alkylation using trans,trans-Farnesol 65 and Allylic Alcohol61.
Unfortunately, due to the presence of the two hydroxyl groups in ester 60, sorne , 't',
, . dialkylated product was isolated along with phenol 76. Both products were very difficult
to separate by silica gel column purification. As a result, cru de olefin 76 was carried over
" ,
to the next reaction sequence. Another Mitsunobu reaction was performed to alkylate
phenol 76 with relay side chain 61. However, this time the desired pentafluorobenzyl
ester 64 was separated from the cru de mixture by flash chromatography and obtained in
31
30% yield over two steps. With both side chains in place, olefin 64 was subjected to
metathesis conditions using 2nd generation Grubbs catalyst 14 as well as 2nd generation
Grubbs-Hoveyda catalyst 77 in attempts to obtain macrocyc1e 63 (Scheme 20).
FO~ FO
F~M'\ F /'1 ______ ~~~~~~~~~~~_~~!_o:o! _____ F+rF 0 M ~ DCM,t.,12h ~~ o ~ 0 0 Grubbs Il (10 mol %) 14 0 1 0 0
-î Grubbs-Hoveyda Il (10 mol %) 77 F
~O~ 64 63
L FO~ #A 0
1°\", 78 Hb
35-37%
Scheme 20 - RRCM of Macrocycle 63.
Grubbs Il (10 mol %)
1\ MesNyNMes
".,CI Ru=-,.
Cl .... 1 Ph
PCY3
14
Grubbs-Hoveyda Il (10 mol %)
1\ MesNyNMes
RUb,:..:·CI Cl.... 1
6 f ~ --\ -
77
Unfortunately, no signs of the desired macrocyc1e were obtained. Only traces of
olefin 78, commonly referred to as a half-metathesis product (HM) was observed by lH_
NMR. The failed macrocyc1ization could be due to the configuration of the olefins or the
substitution pattern in the prenylated side chain. In either case, the configuration about
the allylic double bond on the prenylated side chain should in fact be Gis in order for
macrocyc1e 58 to resemble that of longithorone C (Figure 10).
59
Figure 10 - Revised Model System.
F~~ ~;fi
F 00
58
32
longithorone C
As such, the next target was to prepare cis-farnesol and incorporateit into our model
system.
II.5 - Synthesis of cis-Farnesol 62.
II.5.1 - First Generation Synthesis of cis-FarnesoI62.
(2Z,6E)-Farnesol 62 has been synthesized by a 5 step synthesis developed by
Gibbs and co-workers (Scheme 21).27
27 Gibbs, R. A.; Eummer, J. T.; Shao, y. Org. LeU. 1999, 1,627-630.
33
0 0
HO~ I~ 0 Amberlyst 15 .. NaH, n-BuLi .. Nal, ACN, 23°C, O.5h Ethyl Acetoacetate :::,.. 1
62% THF, O°C, 10min; 79 80 23°C,10h 81
43%
KHMDS
5-CI-2-N(S02CF3hPy DMF, O°C, 10min;
23°C, 10h 45%
AsPh3, Pd(PhCN)2CI2 OTf
?'" DIBAL-H ?'" Cul, SnMe4
.~ .. .. HO PhMe, -78°C, 1h 0 NMP, 100°C, 18h o OEt
• 1 74% 95%
62 83 82 1
Scheme 21 - Gibbs' Synthesis of cis,trans-Farnesol 62.
Geranyl iodide 80 was synthesized from geraniol 79 usmg the acidic resm
Amberlyst 15 and NaI, affording the iodide 80 in 62% yield, Iodide 80 was then
alkylated using the Weiler di anion formed from ethylacetoacetate using NaH and n-BuLi
which afforded the p-ketoester 81 in 43% yield. Ester 81 was then converted to triflate
82 with high stereoselectivity in 45% yield using DMF as solvent. The polar aprotic
solvent disrupts the potassium enolate from coordinating to the carbonyl of the ester,
leading to the cis-isomer (Figure Il).
84
(±) K,
~-: 1
o OEt
85 1
Figure 11 - Stereocontrol During Triflation of ,8-Ketoester 81 using DMF as Solvent,
34
TriJlate 82 was then coupled with tetramethyltin under catalytic amounts of
, , j"" ,0
Pd(AsPh3)2 and Cul as co-catalyst to afford ester 83 in 95% yield. Ester 83 was then
reduced with DIBAL-H to afford the desired (2Z,6E)-famesol 62 in 74% yield. Due to
the overall length of the reaction sequence, low yield, high cost of reagents, and health
hazard, the ab ove procedure was abandoned.
l'. l ' .• :'
II,5.2 - Second Generation Syntbesis of1cis-Farnesol 62.
In order to ob tain a fair amount of cis-olefin 62, Wiemer et al. reported the
following procedure using a.modifiep w~~yg reaction (Scheme 22).28
~O 86
1. (PhhPCH3Br
n-BuLi. THF, -78°C
2, s-BuLi 3. CH20 then LI.
.. ~~ol~ol HO)" - ~2 ~ ~ ,
Scheme 22 - Synthesis of cis-Farnesol 62 using Geranylacetone 86.
28 Yu, J. S.; Kleckley, T. S.; Wiemer, D. F. Org. Lell. 2005, 7,4803-4806.
35
Although geranylacetone 86 was fairly expensive, it could easily be synthesized
starting from commercially available geraniol (Scheme 23).29
~OH DCM. O·C. 1.5h. Dark 79 ~,:, ~" ,~
99%
1 1 1 KOH ~O"""~--
MeOH, l1, 48h
99%
86
Scheme 23 - Synthesis of Geranylace~one 86 .. . ' ...
~Br 87
j NaH, Methyl Acetoacetate
Aliquot 336, PhH, l1, 8h 80%
~o MeO 0
88
Geraniol 79 was converted to geranyl bromide 87 using PPh3 and CBr4 dissolved
in anhydrous CH2Ch. The bromide was used immediately following the removal of
triphenylphosphine oxide. The 'p:ketoester 88 was prepared by alkylating
methylacetoacetate with bromide 87 using NaH in anhydrous benzene. The phase
transfer catalyst AÙquot 336 was esseriÙ~l in order for the reaction to progress. Ester 88
was obtained in 80% yield following column purification and removal of excess
methylacetoacetate. . ~, ,::.',
Geranylacetone: :86 was formed from ester 88 following
saponification and decarboxylation of the ester using KOH and MeOH at reflux for 48 h.
Geranylacetone 86 was obtained in 99%:yield.
Geranylacetone 86 was th en converted to cis-famesol 62 in a modified Wittig
procedure which involved deprotonation of the oxaphosphatane 89, generated from
29 Durst, H. D.; Liebeskind, L. J. Org. Chem. 1974; 39, 3271-3273.
36
geranylacetone 86 in the presence ofmethyl triphenylphosphonium bromide and n-BuLi,
with s-BuLi and th en quenchirig inte.rmediate 90 with dry paraformaldehyde, affording
cis-farnesol62 in 26% yield (Scheme 24).
~~-A~~ HO}' ~ ~2 ~ ~ , ..
then RT
1. (Ph)3PCH3Sr n-SuU, THF, -7aoC
2. s-BuU 3. CH20 than RT
26%
. ..
~O 86
1 1. (PhhPCH3Sr
n-SuU, THF, -7aoC
Scheme 24 - Preparation of cis,trans-FarnesoI62 from Geranylacetone 86.
Il.6 - Metathesis of Model System Incorporating cis-FarnesoI62.
Olefin 92a was formed by Mitsunobu coupling of 0.5 equivalents of (2Z,6E)-
farnesol 62 to pentafluorobenzylester 60 using PPh3 and DIAD in anhydrous THF at
reflux (Scheme 25). 1. ".
<"l,
37
PPh3, DIAD + ~6 o-rrY
F 0 OH
~ HO -7 62
THF,Ci,10h
60 major
. ITO~ j PPh3, DIAD HO~ . THF, Ci, 10 h
61 30% over two steps
59
Scheme 25 - Alkylation using cis,trans-Farnesol 62 and Allylic Alcohol 61.
Once again, due to the presence of the two hydroxyl groups in ester 60, traces of
olefin 92b were observed by l H-NMR along with the desired olefin 92a in the first
Mitsunobu reaction step mentioiied above· (Scheme 25). Due to the difficulty in
separating the trace amount of dialkyl l92b by silica gel column purification, the crude
phenol 92 (a and b) was carried over to the next reaction sequence. As such, minor olefin
92b was never isdlated. Another Mitsunobu reaction was then performed to alkylate
olefin 92a with relay side chain 61. Olefin 59 was separated from the crude reaction
mixture by flash chromatography and obtained in 30% yield over two steps. With both
side chains in place, olefin 59 was subjected to metathesis conditions using 2nd generation
38
Grubbs catalyst 14 as well as 2nd generation Grubbs-Hoveyda catalyst 77 in attempts to
ob tain macrocyc1e 58 (Scheme 26).
~ ~MFFO \; '1 Catalyst
I/'F ~I DCM,L'.,18h
01
F,: ~ 58
'\.Jo
Scheme 26 - RRCM of Macrocycle 58.
1\ MesNyNMes
I ... ,CI Ru=..
Cl .... 1 Ph
PCY3
14
Grubbs Il (10 mol %) 7 - 10% with 5 eq. Ti(Oi-Pr)4 7 - 10%
1\ MesNyNMes
~Ub·~'CI Cl.... ,
6 r; ~
----<. 77 -
Grubbs-Hoveyda Il (10 mol %) with 5 eq. Ti(Oi-Pr)4 7 - 10%
Macrocyc1e 58 was obtained in 10% yield in anhydrous CH2Ch at reflux using
either of the above mentioned catalysts (Scheme 26). The use of Ti(Oi-Pr)4 was believed
to block the catalyst from coordinating to the carbonyl group of the ester and was
determined to be essential for successful macrocyclization.30 The next step was to
increase the macrocyc1ization yield by reducing the steric bulk of the terminal olefin of
cis-famesol to facilitate olefin metathesis at that position (Figure 12).
30 Pschirer, N. G.; Bunz, U. H. F. Tetrahedron Lell. 1999,40,2481-2484.
~o~1 +
r("0~ HO~ 61
F.~F FOH
I~ 1
O~F ~ 1
F 0 OH
60
r421 '~~;I~~~"''''''L. F~~~ F ~ M ~ DCM, 6, 18 h h F: 1 h 01
':; O~O: 'LlO
Figure 12 - Proposed Mode) Study using Disubstituted OIefin 93.
II.7 - Syntbesis of cis-Olefin 93.
39
The following procedure developed by Corey and co-workers has been modified
in an attempt to prepare the desired olefin 93 (Scheme 27),3\
r. TBDPSCI r. NBS ~ ... ~ . ~ Imid, DMF, 23·C, 30 min ~ THFHzO, O·C, 2h
OH 90% 1 OTBDPS 1 ~ ~ ~
~ Br OTBDPS
OH 96
! KZC03
MeOH, 23°C, 2h
r. EtPPh3Br, n-8uLi "": ..
THF, -78°C to 0 C, 2h
1 OTBDPS 58% yield in 4 steps
99
TBAF j
~ THF:H20,2~OC,30min ~~ ~ lOTBDPS OTBDPS
o 98 0 97
THF, 23°C, 5h
65%
·~OH ) 93 '-
Scheme 27 Preparation of OIefin 93 Following Modified Corey Procedure.
31 For the exact procedure see: Corey, E. l; Kania, R. S. J. Am. Chem. Soc. 1996, 118, 1229-1230.
40
Cis,trans-Famesol 62 was protected using TBDPSCI to afford silyl ether 95 in
90% yield. Without chromatographic purification over the next five reaction steps, silyl
ether 95 was taken up in THF and water and reacted with NBS to afford the bromohydrin
96. Epoxide 97 was prepared on treatment of bromohydrin 96 with potassium carbonate
in MeOH. Aldehyde 98 was formed by hydrolytic opening of epoxide 97 and subsequent
oxidative c1eavage of the resulting diol using sodium periodate and periodic acid.
Aldehyde 98 was converted to olefin 99 VIa Wittig reaction us mg
ethyltriphenylphosphonium bromide and n-BuLi. Alcohol 93 was formed by the
deprotection of silyl ether 99 using TBAF in anhydrous THF. The final olefin 93 was
isolated following silica gel flash chromatography in an overall reaction yield of 44%.
II.8 - Metathesis of Model System 94 using cis-Olefin 93.
Pentafluorobenzyl ester 60 was coupled with 0.5 equivalents of cis-olefin 93 via
the Mitsunobu alkylation using PPh3 and DIAD in anhydrous THF at reflux. With no
further purification, the relay side chain 61 was then coupled to crude phenol 100
(containing trace amounts of the dialkylated product) via the Mitsunobu reaction
affording olefin 94 in 30% yield over two steps following column purification (Scheme
28).
60
HO~ PPh3,D)AD .. THF, d, 10 h
y:,('o~
HO~ 61
100
J
i PPha. DIAD
THF, d. 10 h
30";1; over two steps
94
Scheme 28 - Alkylation using Si de Chain 93 and Allylic Alcohol 61.
41
Now with both si de chains in place, olefin 94 was subjected to metathesis
conditions in anhydrous CH2Cl2 at reflux (Scheme 29).
Scheme 29 - RRCM of Model System 94.
1\ MesNyNMes
I, .. ,CI Ru~
CI"'" 1 Ph
PCY3
14
Grubbs Il (10 mol %) 28%
1\ MesNyNMes
~u:o,~'CI Cl..... ,
6 f ~
----\ 77 -
Grubbs-Hoveyda Il (10 mol %) 20%
42
The macrocyc1e 58 was obtained in 33% yield using Grubbs catalyst 14 with 5.0
equivalents of titanium iso-propoxide. No improvement on reaction yields was observed
using the more reactive catalyst 77.
II.9 - Conclusion.
In the present chapter, the formation of a [14 ]paracyc1ophane was accomplished
by relay ring-c1osing metathesis of a famesylated cis-olefin prepared in our group. The
importance of these model studies suggest that the formation of highly hindered
macrocyc1ic structures such as [14]paracyc1ophanes can be accomplished using RCM. In
this manner, a macrocyclic ring structure containing three tri-substituted olefins was
obtained, resembling that of longithorone C.
43
Chapter III:
Attacking the Total . Synthesis of (±)-Longithorone C:
Attachment of Alkyl Chains via Coupling Reactions
In this chapter, the method of attaching the side chains on the central arene for
olefin metathesis will be described via coupling reactions (Figure 13).
'. '.1
x~ ln y HOW +
o x rf'o~ Y~
Figure 13 - Retrosynthetic Analysis of Longithorone C.
F0rF BrkF
F
The goal was to couple both chains, at'the desired para-position in order to obtain
an all carbon [12]paracyclophane with three stereodefined tri-substituted olefins, starting
from a 2,5-dihalobenzoic acid. Herein, we report the model studies used to detennine the
appropriate coupling reactions to obtain the desired target.
44
111.1 - Negishi Coupling Reactions.
Under the following Negishi conditions,32 our group attempted to couple the
organozincate of I-bromo-3-methyl-but-2-ene to methyl-2,5-dibromobenzoate.
Unfortunately, neither bromides 103 nor 104 were observed, and only bromide 101 was
obtained in full (Scheme 30).
Br (-BuU, ZnBr2' Pd(PPh314 /~/. ~ A + I~ / THF~~, 18h MeOyY ~'" M,a : 1 •
o Br Zn*/dibromoethane, Pd(PPh3)4 0 Br
101 102 THF, l'l, 18h 103
0%
Scheme 30 - Negishi Coupling using Prenylbromide 102.
M,a 6 ~
104
The organozincate was prepared through two different methods; allylic bromide
102 was either treated with t-BuLi and transmetallated with ZnBr2 or the zincate was
formed using zinc and dibromoethane/2 but neither case provided any product.
Coupling was also attempted on dibromide 101 with the organozincate of geranyl
iodide 80.32 Unfortunately, neither diene 105 nor 106 were observed (Scheme 31).
32 (a) Gomez-Reino, c.; Vitale, c.; Maestro, M.; Mourino, A. Org. Lett. 2005, 7, 5885-5887. (b) Palmgren, A; Thorarenson, A; Backvall, 1. E. J. Org. Chem. 1998,63,3764-3768. (c) Xie, M.; Wang, J.; Gu, x.; Sun, Y.; Wang, S. Org. Lett. 2006,8,431-434. (d) Rodriguez, A; Miller, D. D.; Jackson, R. F. W. Org. Biomol. Chem. 2003,1,973-977.
45
Br I-BuU, ZnBr2' PdCI2{PPh3h -..:::: Br
M~J t / THF,&,18h ~ +
~ 1 0% MeO + MeO
1 ~ Zn/12' PdCI2{PPh3h o Br o Br 7~4 101 80
DMF, <'>, 15h 105 106 0% " .
Scheme 31 - Negishi Coupling using Iodide 80.
1', J
In a third av.d final, attempt, alkyl bromide 107 was coupled to dibromide 101
affording olefin 108 in 20% yield, suggesting prenyl-derived organozincates may be the
source of the difficulties. Olefin 108 was preferably formed over olefin 109 likely due to
steric interactions (Scheme 32).
~ ~. ~Br _1_-B_uL-,i,_Z_nB_r",,2,_Pd-,{_PP_h..::::3}.::...4 •• W THF, 55·C, 18h
o Br 1 20%
101 107
MeO
o Br
20%
108
Scheme 32 - Negishi Coupling using Alkyl Bromide 107.
Br
4%
109
Negishi couplings of prenylated halides with dibromobenzoate 101 could not be
achieved, and as a result this chemistry had to be abandoned.
111.2 - Copper Catalyzed Grignard Reaction.
Knochel and co-workers have demonstrated that functionalized organomagnesium
reagents prepared through halogen-metal exchange could be used in cross-coupling ,',1.:
46
reactions. Allyl and prenyl electrophiles were coupled to aromatic Grignard reagents
containing ester functional groups (Figure 14).33
FG ~x i-prMgY. [FG 0 M9X •
VI THF,-40°C VI FG = F, CI, Br, CN, C02R, OMe
1. Copper Catalyst (JE • FG---'-- '-'::
2. Electrophile 1 ô
E = Allyl, prenyl
X = CI, Br, 1
y = CI, Br
Figure 14 - Copper Catalyzed Grignard Reactions.
As such, the following retrosynthetic analysis was devised in order to obtain both
the cis-olefin and relay piece at the correct para-position (Figure 15).
\' ~ o~
\ Coupling Reaction 110 r('O~
Y~ X =CI, Br,l
Figure 15 - Retrosynthetic Analysis using Copper Catalyzed Grignard Reactions.
Many reactions of organomagnesium compounds with electrophiles require room
temperature or heating for completion. Knochel and co-workers have demonstrated that
33 (a) Dohle, W.; Gommermann, N.; Kneisel, F. F.; Kopp, F.; Kom, T.; Sapountzis, 1.; Vu, V. A.; Knochel, P. Angew. Chem., Int. Ed. 2003, 42, 4302-4320. (b) Rottlander, M.; Boyrnond, L.; Berillon, L.; Lepretre, A.; Varchi, G.; Avolio, S.; Laaziri, H.; Queguiner, G.; Ricci, A.; Cahiez, G.; Knochel, P. Chem. Eur. 1. 2000, 6, 767-770. (c) Jensen, A. E.; Dohle, W.; Sapountzis, 1.; Lindsay, D. M.; Vu, V. A.; Knochel, P. Synthesis 2002, 4, 565-569. (d) lIa, H.; Baron, O.; Wagner, A. J.; Knochel, P. Chem. Comm. 2006,6,583-593. (e) Krasovskiy, A.; Knochel, P. Angew. Chem., Int. Ed. 2004, 25, 3333-3336. (f) Krasovskiy, A.; Straub, B. F.; Knochel, P. Angew. Chem., Inter. Ed. 2006,1,159-162.
47
a low-temperature preparation of Grignard reagents could allow the synthesis of
polyfunctional magnesium organometallic reagents. In addition, at low enough
temperatures, organomagnesium species with highly sensitive functional groups could be
stable for several hours.
2,5-Dihalobenzoates such as 110 containing chelating groups at the ortho-position
rapidly undergo Mg-X exchange.33 The chelating group was believed to complex to the
Grignard prior to Mg-X exchange, which could facilitate this exchange. Dihalides such
as 110 were thus expected to undergo a chemoselective Mg-X exchange, leading
selectively to Grignard reagents such as 111, in which the magnesium was ortho to the
ester functionality (Figure 16).
ROJ o X
110 X=CI, Br, 1
i-PrMgCI or i-PrMgBr
THF, -40°C, Time
Figure 16 - Magnesium-Halogen Exchange.
.. X
RO~ O--MgX
111
Grignard reagents of type 111 may then react to allow the selective coupling of the relay
chain at the 2-position.
Knochel and co-workers used copper catalysts in the cross-coupling reactions of
aryl magnesates such as 112 in order to achieve successful coupling with allyl or
prenylhalides under fast reaction rates (Figure 17).34
34 Rottlander, M.; Boymond, L.; Berillon, L.; Lepretre, A.; Varchi, G.; Avolio, S.; Laaziri, H.; Queguiner, G.; Ricci, A.; Cahiez, G.; Knochel, P. Chem. Eur. J. 2000, 6, 767-770.
48
[ ]_. p~ (MgBr)
p~ Ph ",0, Ph 0
,-,::1 i-PrMgBr O:M'& CuCN*2LiCI O-C"CN Allyl Brom., '-':: ~ I
h • I
h • • I
h THF, -40·C
112 Figure 17 - Role of Copper Catalyst in Organomagnesium Cross-Coupling Reactions.
, l \.' .. :'
As such it was considered that a 2,5-dihalobenzoate such as 110 could be used, in
". conjunction with a copper catalyst, to accomplish the installation of the desired relay and
cis-olefins at the correct para-positions prior to macrocyc1ization.
The choice of the halogen precursor required evaluation, as weIl as the issue of
the stereochemistry retenti on of the side chains (Figure 18).
R~ o X
X=CI, Br,l
110
J:~
1 0 y
1. Grignard, THF, Temp., Time
Cu-Catalyst
2. Grignard, THF, Temp., Time . . Cu-Catalyst
~ Addition Method y
o~
Figure 18 - Proposed Synthetic Pathway for Copper Catalyzed Coupling of Grignard Reagents.
111.2.1 - Optiritizing Mg-X Exchange ..
Reaction conditions were exploi-ed to ob tain successful Mg-X exchange, ln a
reasonable amount oftime, without affecting the ester functional group (Table 1).
49
Table 1 - Effeet of Ester Group, Halide, and Grignard Reagent on Mg-X exehange.
R~ o X
1. Grignard .. THF, -4œC, Time
x -.
RDA o H
113 X = Br R=Me
116 X = Br R = iPr
119 X = 1 , , - l R = iPr
+
x X
R~ + ~ o X o X
114 X = Br 115 X=Br R=Me R=Me
117 X = Br 118 X=Br R=iPr R= iPr
120 X=I 121 X=I R=iPr R= iPr
Entry X' :R Grignard (eq:) Temp (OC) Tlme (h) Products Yleld Ratio (%)
Br Me i-PrMgCI(I.I) -40.0 3.0 113/114/115 16/58/25
2 Br i -Pr i -PrMgCI (1'.1) -20.0 3.0 116/117/118 83/17/0
3 i -Pr i -PrMgBr (1.2) -40.0 0.5 119/120/121 100/0/0
When methyl-2,5-dibromobenzoate (GC RI = 9.88 min, [M+Ht found 294) was
reacted with 1.1 equivalents of i-PrMgCI followed by an NH4CI quench, a 16/58/25
mixture was obtained ofbromide 113(GC RI = 8.30 min, [M+Ht found 216), dibromide . ,.
114, and ketone 115 (GC RI = 1 L60 min, [M+H]+ found 307) after 3 h ascertained by
GC analysis (Entry 1, Table 1)_
When the methyl ester of dibromide 114 was substituted for iso-propyl ester 117
(GC RI = Il.45 min, [M+Ht found 322), the Grignard reagent attack on the ester was
suppressed and the major product was bromide 116 (GC RI = 10.00 min, [M+Ht found
243) (Entry 2, Table 1)_ However, even after 3 h dibromide 117 was still observed by
GC. When dibromide H 7 was substituted by diiodide 120 (GC RI =11.87 min, [M+Ht
found 416), the ex change was completè in 0.5 h and only iodide 119 was obtained (GC RI
50
=9.70 min, [M+Ht found 291) (Entr)'.3" Table 1). Employment of 1.2 eq of i-PrMgBr
with respect to diiodide 120 resulted in a complete Mg-I exchange ortho to the iso-propyl
ester in 0.5 h at -40°C.· Although methyl 2,5-dibromobenzoate 114 was commercially
available, iso~propyl-2,5-diiodo.benzoate 120 was prepared via alkylation of 2,5-,
diiodobenzoic acid with i-propyl bromide in 87% yield under the presence of NaH in
DMF (Scheme 33).
• !:.:
H~ ---,--:--_i.p_rl __ 'r~ o 1
'121
Scheme 33 - Synthesis of i-Propyl-2,5-diiodobenzoate 120.
. • ,'. ,l",
111.2.2 -'Optimizing SN2'/SN2-typ~ P~oduct Ratio.
o 1
120
In this section, the optimum reaction conditions will be discussed in order to
obtain the desired a-product 124 with high reaction yields. The outcome of these results
was dependant on choice of catalyst, electrophile, and addition method (Table 2) .
. l
Table 2 - Optimizing y / cr Product Ratio.
r~ O---MgBr
122
125 Y = Br 126 y = OAc
r("0~ Y~ Cu-Cat, THF, -4O'C, 1 h
Addition Method
Entry Aryl-I (eq) Catalyst (10 mol %)
1.0 CuCN+2LiCI
2 1.0 Li,Cul,
3 1.0 Li,Cul,
4 1.5 Li,Cul,
1.5 Li,Cul,
y-product
+ (-0 O~
123
Y (eq) Addition Method
Br (1.0) A"
Br (1.3) A
OAc (1.5) A
OAc (1.0) A
OAc (1.0) B"
8 Cu-catalyst added to Grignard reagent, followed by allylic electrophile
b Grignard reagent added to a solution of Cu-cat and allylic electrophile
C Based on l H-NMR yields
51
a-product
O~
124
y / a (% Yield)'
32/20
11/7
0/19
0/43
0/80
Two methods of addition were explored in order to prepare the desired a-product
124. Either the copper catalyst and side chain 125/126 were added to Grignard 122,
prepared from i-PrMgBr and iso-propyl-2,5-diiodobenzoate (Method A), or copper
catalyst and side chain 125/126 were mixed together prior to treatment with the Grignard
reagent 122 (Method B, inverse addition). The requisite allylic electrophiles 125 and 126
were prepared from allylic alcohol 61, treated with either PPh3 and CBr4 or AczO and
pyridine respectively (Scheme 34).
("o~ HO~
61
("o~ HO~
61
DCM, O°C, 1.5h, Dark
99%
23°C, 10 h
99%
Scheme 34 - Synthesis of Bromide 125 and Acetate 126.
•
•
("o~ Br~
125
("o~ ACO~
126
52
Using bromide 125 and addition method A, a 32/20 mixture of sNi/SN2-type
products was obtained based on the IH-NMR yield (Entry 1, Table 2). By employing
LhCuCl4 as catalyst, the formation of the SN2-type products, or a-products was
favored. 35 Employing LhCuCl4 as catalyst in this reaction with bromide 125 did not give
any improvement in the product ratio (Entry 2, Table 2). Switching to acetate 126 as
electrophile eliminated the SNi-type product, or the y-product and provided olefin 124
using LhCuCl4 as catalyst (Entry 3, Table 2). Fast addition of the freshly formed
Grignard reagent 122, to a premixed solution of LhCuCl4 (10 mol%) and acetate 126
(Method B), gave the desired a-product in 80% yield (Entry 5, Table 2).
Backvall and co-workers have conducted numerous studies in order to explain the
a/y product ratios in cuprate additions to allylic acetates, bromides, and chlorides.35, 36
They have demonstrated that in most cases, the more reactive allylic chlorides and
bromides showed a preference for y-substitution in copper catalyzed Grignard reactions,
where allylic acetates showed a preference for a-substitution.
35 Backvall, J.E.; Sellen, M.; Grant, B. 1. Am. Chem. Soc. 1990, 112, 6615-662l. 36 Schmid, M.; Gerber, F.; Hirth, G. He/v. Chim. Acta. 1982,65,684-702.
53
111.2.3 - Mechanism behind the a1rProduct Ratios.
The goal of the preceding study was to obtain the desired a·product, and maintain
the stereochemistry of the olefins in the side chain. Following the mechanism explained
by Backvall, the transmetallation step with the copper catalyst and the Grignard reagent
produces the monoarylcuprate species 127 (Figure 19).35
)-oA O---Mg
1 Br
122
THF, -40·C CuL, THF, -40·C II> Ail Transmetalation ro ~ Fast Grignard Add.
1 GE! O---Cu
1 MgBr L
monoarylcuprate 127
("O~ ACO~
126
y-product
("O~ ACO~
126
(l-product
Figure 19 - Regiocontrol in Copper Catalyzed Grignard Reactions.
Cuprate 127 can either react with the electrophile or a second equivalent of
organomagnesium 122, affording the dialkylcuprate species 128. It was known in the
literature that monoalkylcuprates tend to fonn y·products whereas dialkylcuprates tend to
fonn a-products.35 Fast addition of Grignard reagent 122, low catalyst loading, and low
54
concentration of the allylic acetate 126 are all expected to favour the fonnation of the
dialkylcuprate 128, which in tum should favour the fonnation of the a-product.35
It was believed that following oxidative addition of either mono- or diarylcuprates
onto acetate 126, the cuprate may add at the y-position to fonn o--allyl complex 129
(Figure 20),35
127
128 diarylcuprate L = Aryl a-arylcuprate 129
Figure 20 - Formation of ~Allyl Copper Species 129 with the Allylic Acetate 126.
Br /
Mg \ OAc
Following fonnation of the o--allyl complex 129, the cuprate can either undergo
reductive elimination to generate the y-product, or reversible isomerization to generate 7C-
allyl complex 130, which on reductive elimination would give the a-product (Figure 21).
1 .. ("'o~
A ACO~ JI L=Br,CI,CN
'1 126 Fast Reductive Elimination
rD l ,le e O,k!. Add. • . "(0 1 :
1 ,f' · O---yU Mg Br o"'CU~
L 1
L
monoarylcuprate 127 IJ-allyl complex 129
1
IL = R
Reversible Isomerization
fast
y-product
~Y"J ~ ,:Cu--i= ----.. ~ a-product
~~I' J o 'II ~
1
1t-allyl complex 130
Figure 21 - Formation of 7r-Allyl Copper Species 130 with Acetate 126.
55
Electron-withdrawing ligands such as Br, Cl, and CN on complex 129 have heen
suggested to accelerate reductive elimination leading to the y-product. 37 The latter may
result from using catalysts such as CuBr, CuCI, and CuCN, respectively. If the ligand L
on complex 129 is an alkyl or aryl group (resulting from the formation of the
diarylcuprate intermediate), then reductive elimination would he slow and o--allyl
complex 129 may undergo reversihle isomerization leading to tr-allyl complex 130, and
a-product 124 following reductive elimination (Figure 21).
37 Yamamoto, T.; Yamamoto, A.; Ikeda, S. 1. Am. Chem. Soc. 1971,93,3350-3360.
56
Catalysts such as LÏ2CuC14 lead to the fonnation of the diarylcuprate 130.
Delivery of the. aryl group to the less hindered position of lZ'-allylic complex 130 would
favor addition to the a-position. In addition, the aryl group delivery is believed to be
faster with LizCuC14 as catalyst such that complete retention of stereochemistry is
observed (Figure 21).38
To sum up thus far, starting from i-propyl-2,5-diiodobenzoate 120, 1.2
equivalents of i-PrMgBr was required with respect to 120 in order to have complete Mg-I
ex change in under 0.5 h at -40°C. The newly fonned Grignard reagent was then added to
a flask containing a premixed solution of allylic acetate 126 and Li2CuC14 as copper
catalyst over a 2-min period, affording iodide 124 in 80% yield (Scheme 35).
rOY~ o 1
(1.5eq)
120
Ero~ 126 AcO~
1. i-PrMgBr (1.8 eq), THF, -40°C, 30min
2. 126, Li2CuCI4 , THF, -40°C
2min inverse addition
3. THF, -40°C, 1.5h; 23°C, 1h
80% :7
(0 124 ~
Scheme 35 - Optimized Reaction Conditions in Forming Aryl Iodide 124.
111.2.4 - Attaching cis-Olefin 93 via the Copper Catalyzed Grignard Reaction.
In light of the previous coupling reaction, cis-olefin 93 was converted to allylic
acetate 131 in the presence of acetic anhydride and pyridine to afford acetate 131 in 96%
yield (Scheme 36).
38 Levisalles, J,; Rudler-Chauvin, M.; Rudler, H. 1. Organomet. Chem. 1977, 136, 103-110.
~. 93 , OH
23°C, 10 h
96% ~ 131 OAc
Sche~e 3~ Formation of the Allylic ~c~tat~ 131 perived from cis-Olefin 93.
57
When subjecting aryliodide 124 to the same reaction conditions, the absence of a • 1 ., ,
chelating group ortho to the iodine a~.om, was expected to slow Mg-l exchange. Two
equivalents of i-PrMgBr were require~~ to obtain complete Mg-I exchange with aryl
iodide 124 in 0.25 h at -40°C. The freshly formed Grignard reagent was then added to a L .'. ,t!U) \.'
p~emixed solution o~ cis~acet;ite 131 al1d the LhCuCl4 to afford the desired olefin 132 in
50% yield (Scheme 37).
é?' (1.5eq) 0
124 (' ,~
~131 . , ,!;' ".:,. OAc
1. i-PrMgBr(3.0eq);'fHF. ·40·C. 15min
2min inverse addition 3. THF, -40·C, 1.5h; 23°C, 1h
50%
..
Scheme 37 - Optimized Reaction Conditions in Forming Olefin 132.
132 é?' oJ
With reaction protocols for both allylic acetates 126 and 131 in hand, the next
step was to determine whether there .yvas retention of olefin stereochemistry in the
çoripling.reactions.
58
111.3 - Determining Stereochemistry of the Side Chains.
In the NOESY spectrum of trans-allylic acetate 126, nOe was observed between
the methyl signal at 1.66 ppm and the allylic methylene signal at 4.00 ppm. No nOe was
observed between the methyl signal (1.66 ppm) and vinyl proton (5.60 ppm) (Figure 22).
Hb '
ACO~O~ lH ~c
a....) nOe
126 '
_': :~ 1
Figure 22 - Stereochemistry of Relay Side Chain.
.. O~
124
'In the NOESY spectrum of iodide 124, the methyl signal exhibited nOe with the
methylene signal at 3.97 ppm and not with the vinyl proton (5.21 ppm) indicating
retenti on of stereochemistry in coupling of the allylic acetate 126 to iodide 120.
The NOESY spectrum of esfer 132 was complicated due to overlapping signaIs '. 'f .1 ......
for the alkenyl protons. As a mod~i system, ester 135 was formed following a similar
Cu-catalyzed Grignard reaction employing acetate 136 that was derived from cis-farnesol
62 (Scheme 38).
ACO~--Z
~ ~ .1 !
131
rOI, N'H. ,P,I rO',
HO ~ DMF, 23°C, 1;' ---(0 ~ 87% \
o 133 0 134
• , 1 ~ il , «
~131 - OAc
1. i-PrMgBr (3.0eq), THF, -40°C, 15min
2min inverse addition 3. THF, -40°C, 1.5h; 23°C, 1 h
80%
nOe f".
~ OH " ; 62
23°C, 10 h , 96% ~ 136 OAc
Scheme'38 - Synthesis of Acetate 136 and Stèieochemistry of Oleftn 153.
59
In the NOESY spectrum of ester 135, the vinyl proton at 5.33 ppm and methyl
signal at 1.76 ppm exhibited an pOe iI1dicative of a cis-olefin. Based on this result, a
similar retenti on of configuration has been assumed for ester 132. " - 1 •• _
111.4 - Conclusion.
In summary, copper-catalyzed cross coupling of aryl Grignard reactions to allylic
acetates 126 and 131 gave ester 132 with retention of stereochemistry. The stage was set
to explore the total synthesis oflongithorone C by formation of the macrocyc1e by RCM.
60
Chapter IV:
Improved Gearing Elements for Macrocyclic Olefin
Metathesis: A Model Study ' . ./
1/:1
IV.I - Improved Gearing Element used in Model Systems.
Our group has continued to invèstigate new and improved gearing elements for
oletin metathesis. During studies directed towards developing gearing elements that
function via non-covalent interactions, we investigated substituting the pentafluorobenzyl
ester with other fluorinated aromatics. One such attempt involved use of a 3,5-
bis(trifluoromethyl)benzylester (Schem~ ~9). This gearing element was tirst examined in
model systems before application to th~ total synthesis of longithorone C.
; "
94
139 , . •. ..... J.
137
Et3N DMF, 23°C, 24h
80% over two steps
Scheme 39 - Preparation of Bistrifluoromethyl Benzyl Ester 139 •
. \ ' ...
61
Ester 94 was hydrolyzed using NaOH in a mixture of toluene and methanol at
reflux for 24 h. The crude acid 137 was alkylated with 3,5-bistrifluoromethylbenzyl -
~ " ~
bromide and triethylamine in DMF to afford ester 139 in 80% yield over two steps.
Previously, ring c10singmetathesis using pentafluorobenzyl ester 94 gave 33% yield of
[12]paracyclophane 58. With bis(trifluoromethyl)benzyl ester 51 the same conditions
gave macrocyc1e 140 in 47% yield (Scheme 40).
~ F 0
~~'\ F 'II Grubbs Il (10 mol%) 14 b F ~ ..
Ti(Oi-Pr)4, DCM, 1'., 15h
o ~ 0 ) 33%
94 'Z ~o •
f;J o ~ 0 0
58
CF3
~~ o 0 140
Scheme 40 - Improved Bistrifluoromethyl Gearing Element on Model System.
62
Qualitatively, the results may be explained by electronic effects of the fluorine
substituents, Since the fluorine atoms of the pentafluorobenzyl ester are directly attached
to the arene in ester 141, the electron density is concentrated on the fluorine atoms and
the center of the arene is considered electropositive. The same effect can be caused by
the bistrifluoromethyl groups in ester 142. However, the fluorine atoms of the
pentafluorobenzyl ester may have both electron donating and electron withdrawing
abilities, where as the trifluoromethyl groups in the bistrifluoromethyl gearing element
are solely electron withdrawing.24 One may consider that the CF3 groups make the arene
more electropositive than that of the pentafluorobenzyl ester (Figure 23).
63
iF ;< OR iF
~ ~F OR
1,1 I~ F
;, CF;! F
0 0
0 141 o 142
Figure 23 - Quadrupolar Interactions using a CF3-Based Gearing Element.
IV.2 - Molecular Modeling using the Bistrifluoromethyl Auxiliary on Madel
Systems.
Molecular modeling was used in order to understand how the non-bonding
interactions affected the product distribution using high order DFT method calculations
(Figure 24).39
39 For a complete list ofmethods and results used in the molecular modeling studies see: Collins, S.; ElAzizi, Y.; Schmitzer, A. R. J. Org. Chem. 2007, 72,6397-6408.
"open" 143
"open" 146
Pentafluoro auxiliary t.H"'Ck - t.Hopon = -0.20 kcal/mol
3,5-Bis(trifluoromethyl) auxlllary t.H stack - t.Hopon = -1.28 kcal/mol
64
Oxygen - Arene
"stacked" 144
"stacked" 147 148
Figure 24 - Results of Higher Order DFT Calculations on Model System (Red color denotes areas of
increased electronic density due to fluorine atoms).
In the above model systems (that incorporate the oxygen atoms about the central
arene), the "stacked" conformer 144 of the pentafluorobenzyl ester was preferred over the
"open" conformer 143 by 0.20 kcal/mol. With the bistrifluoromethylbenzyl ester as
gearing element, the "stacked" conformer 147 was preferred over the "open" conformer
146 by 1.28 kcal/mol. These findings correlate with the increased yield for the
bistrifluoromethylbenzyl ester 140 relative to the pentafluorobenzyl ester 58 in the ReM
reaction. The "stacked" conformers above do not, however, engage in J[: J[ stacking
interactions, instead the benzyl group sits over an oxygen atom (145/148) and is believed
to engage in lone pair: J[ interactions between the electron deficient pendant arene and an
65
oxygen atom (Figure 24). These interactions, although rare, have been previously
documented for systems in solutions.4o
IV.3 - Molecular Modeling using the Bistrifluorometbyl Auxiliary on an Ali Carbon
System.
Molecular modeling was carried out in order to probe how the non-bonding
interactions between the electron deficient auxiliaries and electron rich arenes would
effect the product distribution in fonning an aU carbon [12]paracyclophane (Figure 25).
"open"149
"open" 152
Pentafluoro auxiliary "stacked" 150 ôE l1aCk - ôE_n = -0.55 kcal/mol
3,5-Bis(trifluoromethyl) auxiliary ôE.tack - ôE_n = -0.41 kcallmol
"stacked" 153
face-face
154
Figure 25 - Results of Higher Order DFT Calculations on Ail Carbon System (Red color denotes
area ofin
creased electron density due to the fluorine atoms).
40 Egli, M. ; Sarkhel, S. Ace. Chem. Res. 2007, 40, 197-205 .
66
The "stacked" confonner 150 of the pentafluorobenzyl ester was preferred over
the open confonner 149 by. 0.55 kcallmol. The "stacked" confonner 153 of the
bistrifluoromethyl auxiliary was preferred over the open confonner 152 by only 0.41
kcallmol. The lower energy difference calculated for the bistrifluoromethylbenzyl
gearing element may be due to steric repulsion between the trifluoromethyl groups and
the central arene. In the absence of oxygen atoms, the "stacked" confonners were
predicted to engage in quadrupolar n:n interactions (151/154) (Figure 25).
The pentafluorobenzyl ester was thus predicted to be more likely to fonn the all
carbon macrocyc1e. Consequently, RCM was examined on olefins 155 and 156
containing both auxiliaries to correlate the above findings with the paracyc10phane
product distribution (Figure 26).
Catalyst (10 mol %)
• Ti(Oi·Pr)4, DCM, L'., Time
o~
155 = Pentafluorobenzyl ester 157 = Pentafluorobenzyl ester
156 = Bis(trifluoromethyl)benzyl ester 158 = Bis(trifluoromethyl)benzyl ester
Figure 26 - Model System used in Determining the Ideal Gearing Element.
IV.4 - Determining the Ideal Gearing Element in the Formation of an Ali-Carbon
[12]Paracyclophane.
The following retrosynthetic analysis was proposed to study the gearing element
for the fonnation of an all carbon macrocyc1e (Figure 27).
o~
159 "RRCM 124
67
(î .. ~ ,.~
+
Figure 27 - Retrosynthetic Analysis for the Model System used for Determining the Ideal Gearing
Element.
Aryl iodide 124 was made as described in chapter III. Bromide 161 was made
from commercially available olefin 162 (Scheme 41).
~OH
Î1 162
~Br ) 161
TBDPSCI
Imid, DMF, 23°C, 5h 99%
..
"'
DCM, DOC, 2h, Dark 99%
~OTBDPS Ozone ~OTBDPS
163 Py, DCM, -78°C, PPh3,"'1h') 11:.d o 164
~OH ) 166
1 EIPPh3Br, nBuLi
THF, -78°C
.. TBAF r-oTBDPS THF, 23°C, 5h
30% over three steps 1 165
Scheme 41 - Synthesis of Bromide 161.
Protection with TBDPSCI afforded silyl ether 163 in quantitative yield. Without
further purification silyl ether 163 was c1eaved by ozonolysis for 1 h at -78°C to afford
aldehyde 164 that was immediately converted to olefin 165 by a Wittig reaction using
ethyl triphenylphosphonium bromide and n-BuLi in anhydrous THF. Triphenylphosphine
oxide was precipitated out using hexanes and was filtered during workup, and the silyl
68
ether of olefin 165 was removed with TBAF to afford alcohol166 in 30% yield over four
steps. Finally, bromide 161 was prepared from alcohol166 in the dark using PPh3 and
CBr4 in CH2Clz for 1.5-2 h and was used without further purification in the next synthetic
step (Scheme 42).
124
+ ~Br
J 161
(-BuU, ZnCI2
PdCI2(dppf), THF, 55°C, 1~h r O~
155 = Pentafluorobenzyl ester
20%
.. DMF, 23°C, 10h HO
77% over two steps for both benzylbromides
156 = Bis(trifluoromethyl)benzyl ester
o
168
o O~
167
j NaOH PhMe:MeOH (1:1)
L'., 24 h
Scheme 42 - Synthesis of Pentafluorobenzyl ester 155 and Trifluoromethylbenzyl ester 156.
Triene 167 was formed by coupling the organozincate of bromide 161 to aryl
iodide 124 using PdClz(dppf) in anhydrous THF, albeit in 20% yield. Pentafluorobenzyl
ester 155 and trifluoromethylbenzyl estèr 156 were both made in 77% yield over two
steps by saponification of ester 167 with NaOH in al: 1 mixture of toluene and methanol,
and alkylation of acid 168 with the respective benzyl bromide (69 and 138).
69
Metathesis of esters 155 and 156 were conducted in anhydrous CH2Ch usmg
Grela catalyst 169 and the Blechert catalyst 170 in attempts to form [12]paracyclophanes
157 and 158 (Table 3).
Table 3 - RRCM of Model Compound [12]Paracyclophane 157 and 158.
Catalyst (10 mol %) •
Ti(Oi-Pr)4, DCM, 1'., Time
155 = Pentafluorobenzyl ester 157 = Pentafluorobenzyl ester
156 = Bis(trifluoromethyl)benzyl ester
Entry
2
4
~ MesNyNMes
CI,. 1
y~~N~ Grela 169
Aryl-CH, Catalyst (10 mol %)
3,S-bistrifluoromethylbenzyl ester Grela 169
penlafluorobenzyl ester Grela 169
penlafluorobenzyl ester Grela 169
pentafluorobenzyl ester Blechert 170
158 = Bis(trifluoromethyl)benzyl ester
~ MesNyNMes
CI,. 1
Y~9 Ph
Blechert 170
Solvent Addition Tlme (h) Reaction Time (h)
CH,Cl, 1.0 4.0
CH,Cl, 1.0 4.0
PhMe 1.0 4.0
CH,Cl, 1.0 4.0
Yield(%)
0
7-10
7-10
14
No trace of macrocycle 158 was observed after treatment of the
bistrifluoromethylbenzyl ester 156 with catalyst 169 for 4 h in CH2Ch (Entry 1, Table 3).
On the other hand, pentafluorobenzyl ester 155 reacted under the same reaction
conditions to fumish macrocycle 157 in 10% yield (Entry 2, Table 3). Using toluene and
increased reaction temperatures did not produce any improvement in the yield of 157
70
(Entry 3, Table 3). However, with the use of Blechert's catalyst 170, macrocyc1e 157
was obtained in a c1eaner reaction and in 14% yield (Entry 4, Table 3).
In the NOESY spectrum of macrocyc1e 157, the configuration about the newly
formed double bond was shown to be cis on observation of a nOe between the signaIs for
the methyl (1.73 ppm) and vinyl (4.36 ppm) proton signaIs (Scheme 43).
O~
Scheme 43 - NOESY of Macrocycle 157.
Blechert Catalyst 170 (10 mol%)
Ti(0i-Pr)4, DCM, il, Time
14%
•
nOe
In light of the cis-geometry of trisubstituted olefin 157 the ring strain involved in
forming [12]paracyc1ophanes was expected to lead to a cis-olefin in the ReM reaction to
form longithorone C.
IV.5 - Conclusion.
In this chapter, other fluorinated aromatics were demonstrated to serve as gearing
elements. Formation of aH carbon [12]paracyc1ophane 157 containing a tri-substituted
olefin was achieved by olefin metathesis albeit in low yield. As suggested by molecular
modeling calculations using the high order DFT method, the pentafluorobenzyl ester
proved superior to the bistrifluoromethylbenzyl ester for favoring a "stacked" conformer
as a result of the stronger non-bonding interactions between the pentafluorobenzyl ester
71
and the pendant arene that may be necessary for RCM.39 These suggestions correlated
with the fmmation of [12]paracyclophane 157 containing one tri-substituted olefin (Table
3). Although the yields in these macrocyclizations were low, the macrocyclization to
fmm 10ngithoroneC was expected to proceed more efficiently due to the presence of the
cis-olefin adjacent to the aromatic core ..
. :.
I! J
72
ChapterV:
Approach Towards the Total Synthesis of (±)-Longithorone C
The present ehapter will foeus on the approaeh towards the eompletion of the total
synthesis of longithorone C. The following retrosynthetie analysis eould be followed in
order to arrive to the desired target (Figure 28).
Oxidation :> :>
MeOH H
171
Il 1. Saponification il 2. Reduction! Oxidation
longithorone C
Coupling Metathesis /
132 174 173
Figure 28 - Retrosynthetic Analysis for Longithorone C.
73
Synthesis of ester 132 was described in chapter III. Following saponification of
the iso-propyl group of ester 132, and esterification with the gearing element of choice,
olefin 174 was expected to undergo RCM to form macrocycle 173. The remaining
synthetic steps would involve a series of oxidation/reduction reactions in order to form
the quinone core of longithorone C.
V.l- RRCM in Forming an Ali-Carbon [12]Paracyclopbane.
Saponification of the iso-propyl group of ester 132 was performed using an excess
ofNaOH in al: 1 mixture of toluene:methanol al reflux. Olefin 175 was obtained in 94%
yield, and without further purification, alkylated with either pentafluorobenzyl bromide
69 or bis-3,5-(trifluoromethyl)benzyl bromide 138 using K2C03 as base. The bromides
69 and 138 were passed through basic alumina twice prior to their use in alkylation of
olefin 175 in order to obtain 80% yield of olefins 174 and 176 respectively (Scheme 44).
:?' 0 Il 132 V
PhMe:MeOH 1:1, A, 10h HO
94%
1" j;F F
Br ;, F
F 69
175
K2C03
DMF, 23°C, 24h
80%
ArH 2CO
174 = Pentafluorobenzyl ester 176 = BistrifJuoromethyl ester
Scheme 44 - Synthesis of Macrocyclization Precursors 174 and 176.
74
A series of catalysts were next screened in the macrocyclization step in forming
macrocycles 173 and 177 (Table 4).
75
Table 4 - RRCM in forming Cyclophanes 173 and 177.
Ca,talyst (10 mol "la) .. Ti(Oi-Pr)4, Sol ven!, L\, Time
174 = Pentafluorobenzyl ester 173 = Pentafluorobenzyl ester 176 = Bistrifluoromethylbenzyl ester 177 = Bistrlfluoromethylbenzyl ester
Entr~ Substrate Catal~st (10 mol %~ Suivent Addition Tlme !hl' Reaction Tlme (hl Yleld (0/0)
174 G 1114 CH,Ci, 1.0 18.0 tracesb
2 174 G-H Il 77 CH2C12 1.0 18.0 traces
3 174 Grela 169 CH2Ci2 3.0 4.0 23
4 174 Grela 169 PhMe 3.0 4,0 20
5 176 Grela 169 CH2C12 1.0 4,0 la 6 176 Grela 169 PhMe 3,0 4,0 32
7 176 Blechert 170 CH2C1, 3.0 4,0 37
a Ali additions were conducted using a syringe pump
b Traces ofproduct were observed by 'H-NMR
From the macrocyclization of bistrifluoromethylbenzyl ester 176 in CH2Ch with
either 10 mol% of catalyst 14 or 77, after 18 h only traces of macrocycle 177 were
observed by IH-NMR (Entries 1 and 2, Table 4). Macrocycle 177 was isolated in 23 and
20% yields for 4 h using the Grela catalyst 169 in CH2Ch and PhMe respectively (Entry
3 and 4, Table 4).
Pentafluorobenzyl ester 174 with catalyst 169 in CH2Ch afforded macrocycle 173
in 10% yield (Entry 5, Table 4). An increased yield of 32% was obtained from reaction
of 174 in toluene (Entry 6, Table 4). In addition, using the Blechert catalyst 170 on
pentafluorobenzyl ester 174, afforded macrocycle 173 in 37% yield (Entry 7, Table 4).
The higher reaction yields observed using pentafluorobenzyl ester 174 relative to
76
bistrifluoromethylbenzyl ester 176 agreed with the findings of the molecular modeling
calculations that suggested superior stacking effects of the pentafluorobenzyl gearing
element would be preferred (Chapter IV).
V.2 - Future Work for Completing tbe Total Syntbesis of Longitborone C.
The best reaction conditions for RRCM was found using pentafluorobenzyl ester
69 as gearing element (olefin 174), in anhydrous CH2Ch, with 10 mol% of catalyst 170,
and 5.0 equivalents of Ti(Oi-Pr)4, affording macrocycle 173 in 37% yield (Table 4). Our
group is presently working on further optimizing the auxiliaries for macrocyclization of
the above aIl carbon system. The following synthetic steps would complete the total
synthesis oflongithorone C (Figure 29).
DIBAL-H . ------------------......
DCM. -7S·C H
: 31 % H20 2• KHS04
: MeOH ,
Oxidation ................... _ .. _--_ .....
longlthorone C 171
Figure 29 - Proposed Reaction Steps for the Completion of Longithorone C.
77
• 1 ~ ,
Following the fonnation of macrocyc1e 173 via RRCM, removal of the gearing
element may be achieved using DIBAL .. :H at low temperatures. An interesting procedure
developed by Backvall and co-workers may allow for the successful oxidation of
aldehyde 172 to phenol 171 resembling the Baeyer-Villiger reaction. The challenge with
the latter oxidation being unfavorable for substrates possessing functional groups labile to 1 :1
peracids, was overcome by the acid-catalyzed oxidation of benzaldehydes such as 172
with hydrogen peroxide in methanol, that proceed through peroxy hemiacetal " l'
i. l ,l," • 1 :1'1
intennediates such as 178b (Figure 30).41
- : ~ ~,
KHS04
H _._------_ .. _-----,..
MeOH. 23"C. 24h H
172 178a 178b
Ar Migra lion
Hydrolysis .---------------_.
171 179
Figure 30 - Proposed Mechanism for Oxidation of Benzaldehydes to Phenols.
The fonnation of hemiacetals of type 178b was made possible through dimethyl acetal
intennediates of such as 178a prepared by treating aryl aldehydes of type 172 in acidic
41 Matsumoto, M., Kobayashi, K., Hotta, Y. 1. Org. Chem. 1984,49,4740-4741.
78
methanol. Aryl migration of intennediate 178b would therefore provide ester 179, and
subsequent hydrolysis would afford phenol 171. In this manner, olefinic substituents in
benzaldehydes should be stable under the present reaction conditions and the oxidation
products should be phenols as opposeàto benzoic acids obtained via the Baeyer-Villiger
reaction (Figure 30). , "
In order to fonn ,the qüinone cdre'oflongithorone C from phenol 171, Sorokin and
co-workers developed a controlled oxidation for phenols bearing oxidizable olefinic
functional groups under mild conditions.using iron tetrasulfophthalocyanine supported on
silica as a heterogeneous catalyst and tert-butylhydroperoxide as the oxidant.42 Their
group observed that aromatic oxidation was the major pathway and the proposed
mechanism was based on an iron complex-based oxo species fonned when Iron
complexes in combination with hydropetoxides involved in 'oxidation reactions. ,,'
Following the completion of longithorone C, the asymmetric synthesis should be
attempted by employing either a chiral catalyst or a chiral auxiliary. For example Grubbs
has developed a chiral catalyst such as catalyst 180 that may be used in the asymmetric
synthesis of longithorone C, however bulky catalysts su ch as 180 have been known to
show low reactivity.43 Recently, Pierre-André Fournier within our group had developed a
reactive and less bulky catalyst, PAF-l 181, in order to have an increased level of
reactivity compared to existing chiral Ru-based catalysts (Figure 31 ).43
1 t!,
42 Sorokin, A.B.; Zalomaeva, a.v. NewJ. Chem. 2006, 30,1768-1773. 43 Seiders, T. J.; WardiD. W.;'Grubbs, R. H. Org. Lett, 2001, 3,3225-3228.
Grubbs 180
t-BU\_--(t-BU
Q:NyN_Me
I-Pr l,CI CI·Ru~
1 Ph PCY3
PAF-1 181
Figure 31 - Proposed Chiral Catalysts for the Asymmetric Synthesis of Longithorone c.43
79
The results found while cyc1i.~i~g the precursor 174 suggest that more reactive
catalysts are necessary in order to obtainhigh reaction yields. As such, catalyst PAF-1
181 would seem to be a promising choice (Figure 31).
Yet another method for per.forming the asymmetric synthesis would be to use
chiral gearing elements prepared fr0I? brql?ides such 182 and 183 (Figure 32).
~~ H Me F
182 . , 183
Figure 32 - Proposed Chiral AuxiIiaries for the Asymmetric Synthesis of Longithorone C.
Esterification with these auxiliaries may lead to chiral gearing elements, which in
tum may lead to the asymmetric synth,esis of longithorone C. ., ,
80
V.3 - Conclusion
Inspired by the independent work performed by Tadahiro and co-workers in
forming Longithorone B, and Shair and co-workers in forming Longithorone A, our , '
group had focused on optimi~ing macrocyclization reactions forming the , ". 1 ~, :. • 'l!
[12]paracyclophane longithorone C. Model studies revealed that ring-closing olefin
metathesis can be used in forming [12] and [14 ]paracyclophanes with macrocycles 1, j
resembling that of longithorone C. The formation of various macrocyclic cyclophanes
via ring-closing olefin metathesis was. possible through the use of a pendant fluorinated 1 • ,', • j~' 1
benzyl ester group. Bis(trifluoromethyl)benzyl ester proved best for model system 139
incorporating the oxygen atoms about the central aromatic core. Pentafluorobenzyl ester '.
was more effective in making the aIl carbon paracyclophane 157. Model studies revealed
that the use of relay side chain 126: was necessary in order to form highly substituted ,
double bonds by a novel techn.ique called relay ring-closing metathesis. In addition, our
group was able to stereoselectively form the [12]paracyclophane 173 using copper
catalyzed Grignard reactions optimized in our labs. The advanced precursor 173 has . '.
been prepared and may be converted to longithorone C by a sequence of reactions
featuring an ester re4uction and. aromatic ring oxidation.
81
Chapter VI:
Experimental , ,
li'"
VI.l - General Experimental Notès . l ,
Reagents
AU reagents were purchased from Aldrich, Sigma, or Alfa Aeser and were used without
further purification, unless otherw'ise noted.
Anhydrous Reaction Conditions
AIl anhydrous reactions were performed under an atmosphere of dry nitrogen. The glass
vessels, needles, stirring bars, and reflux condensers were either oyen dried at llO-140°C,
or flame dried, and cooled to room temperature under a flow of nitrogen. Solvents such
as tetrahydrofuran, dichloromethane;i diethyl ether, toluene, hexane, methanol, and
dimethylformamide were obtained· by filtration through the Seca Solvent System by
GlassContour, which filters the solvents over a column of alumina under an atmosphere
of argon. Acetonitrile and benzene were purchased from Aldrich and were dried using
molecular sieves (4-8 mesh, 0.125 inch, type 4 Â).
82
Temperature Control
The temperatures indicated in the reaction schemes and in the procedures are all external
temperatures. The following bath temperatures were obtained from the following
mixtures:
dry ice-acetone bath
dry ice-acetonitrile bath
ice water bath
ambient temperature
,( 1 •
Chromatography
, ..• .' 44 Silica gel flash chromatography was carried out according to the procedure of Still,
using silica gel obtained from Silicyc1e Chemical Division (40-63 nm; 230-240 mesh).
Thin layer chromatography (TLC) was performed usmg commercially available,
precoated glass backed Silica Gel 66' F254 plates with a thickness of 25 ).l.m.
Visualization of the UV active co~pounds on the TLC plates was do ne with the aid of a
J , ~ I} 4'.
UV254 lamp. The TLC plates were stained with either of the following stains:
• Cerium molybdate stain:4S Pn;pared by dissolving 12 g ammonium molybdate,
and 0.5 g ceric ammonium molybdate in 235 mL H20 and 15 mL
, . concentrated sulfuric acid.
44 Still, w. c.; Kahn, M.; Mitra, A. 1. Org. Chem. 1978,43,2923-2925. 45 El Khadem, H.; Hanessian, S. Anal. Chem. 1958,30, 1965-1965.
83
• Potassium permanganate stain: Prepared by dissolving 1.5 g potassium
permanganate, 1 (i) .g potassium; carbonate and 1.25 mL 10% NaOH in 200 mL
H20.
Instrumentation
Nuc1ear Magnetic Resonance Spectroscopy:
Routine nuc1ear magnetic resonance spectra were recorded on Bruker AMX 300 (lH 300
MHz, 13C 75 MHz), Bruker AV 300 (lH 300 MHz, 13C 75 MHz), Bruker ARX 400 (lH
400 MHz, 13C 100 MHz), and Bruker AV 400 eH 400 MHz, 13C 100 MHz) instruments.
Chemical shifts (0) and coupling constants (J) are expressed in parts per million (ppm)
and hertz (Hz) respectively. Abbreviations used describing the splitting of the peaks are
as follows:
s
d
t
q
dd
ddt
m
sept
\ .;. singlet
. ,) doublet
triplet
quartet
", ~.' doublet of doublets
doublet of doublet of triplets
multiplet
septet
84
Please note that' ail J3C signais for~,carbons bearing fluorine substituents are often
observed as .very weak signaIs.. These signaIs are often unobservable or barely
distinguishable from the baseline. As su ch, the signaIs are not reported.
Gas Chromatography:
Ge-MS data were measured using an Agilent Capillary Column model number 19091s-
433 HP-5MS, 30.0 m length, 250;0 -Ilm,diameter, and 0.25 Ilm thickness. Front inlet
Splitless, with an,initial temperature of250°C.· The run time was 0 - 27.5 min. The oven
temperature was 50°C 275°C, withJan' instrumental rate of 10°C/min. The flow rate
was established at 1.0 mL/min, using,helium gas and the Front detector IlECD was set at
250°C.
Mass spectra:
High resolution mass spectroscopy (HRMS) was done by the Centre régional de
spectrométrie de masse at the Department of Chemistry, Université de Montréal using an
LC-MSD-TOF instrument from Agitent Technologies in positive electrospray mode.
Either protonated molecular ions (M + Ht or sodium adducts (M + Nat were used for
empiricai formula confirmation. lodide 152 proved to be too unstable for HRMS by
FAB, API, El, and CI. As such, iodide 152 did not ionize and consequently did not
provide any valid mass spectral data.
85
VI.2 - Experimental Proced.ures and data
Preparation and Titration of i-PrMgBr
The preparation of i-PrMgBr has been described by Steglich and co-workers.46 The
titration ofi-PrMgBr-'has been described by Paquette and co-workers.47
\ :.' ~
Titration of n-BuLi, s-BuLi, and t-B,uLi
The titration of organolithium reagérits has been described by Bac1awski and co-
workers.48
Preparation of dilithium tetrachlorocuprate
LiCI and CuCh were independently dried for 10 h at 100°C under reduced pressure.
Both reagents were transferred to a glove box under a nitrogen atmosphere. To a round
bottom flask containing CuClz (0.67 g,5 mmol) and LiCI (0.42 g, 10 mmol) anhydrous
THF (10 mL) was added. The solution was allowed to stir at room temperature for 10
min affording a homogeneous dark-recl.colored solution. The concentration of Li2CuCl4
prepared in this manner was 05 M and was used immediately. This solution was never
stored for more than a couple ofhours.46
46 Steg1ich, W. Synthesis 2005, 6, 1019-1027. 47 Lin, H. S.; Paquette, L. Synth. Commun. 1994,24,2503-2506. 48 Kofron, W. G.; Bac1awski, L. M. J. Org. Chem. 1976, 4/, 1879-1880.
86
Pentafluorobenzyl-2,S-dihydroxybenzoate (60)
OH F
ttJ HoA t;: + HO 1: F
PPh3• DIAD • THF. 23"C. 10h h F ~
46% 01 o OH F F 0 OH _l .
66 67 60
In a round bottom flask, benzoic acid 66 (1.54 g, 9.99 mmol), PPh3 (4.20 g, 16.0 mmol),
and alcohol 67 (0.99 mg, 5.00 mmot) were dissolved in anhydrous THF (100 mL), cooled
to OCC, and treated over a 2 min period with DIAD (3.10 mL, 16.0 mmol). The reaction
was allowed to stir at room temperature for 10 h, and was monitored by TLC (diphenol
60: Rf = 0.2, 100% ethyl acetate, product appeared purple under UV irradiation).
Additional PPh3 (2.10 g, 8.00 mmol) was added to the mixture until the yellow color of
DIAD had disappeared. The volatiles were evaporated to a residue that was purified by
silica gel flash chromatography (10% ethyl acetatelhexanes). Evaporation of the
collected fractions gave ester 60 as' a white solid (1.52 g, 46%). Spectral data for 60 .7 !,
matched that reported in the literature.49
.1 "
Pen tafluorobenzyl 2,S-dihydroxybenzoate (60)
.1. OH F
M HoA 1;.' . ~ ElaN . 1 • + DMF, 23"C. 10h Br h F h F ~
80% 01 o OH F F 0 OH
66 69 60
In a round bottom flask, benzoic acid 66 (0.20 g, 1.30 mmol) and bromide 69 (0.18 mL,
1.30 mmol, previously passed through a short plug of basic alumina) were dissolved in
. . .
49 Collins, S. K.; EI-Azizi, y, Pure Appt. Chem. 2006, 78, 783-789.
87
anhydrous DMF (13 mL), cooled to Q?,C, treated dropwise with Et3N (0.20 mL, 1.42
mmol) and stirred at ODC for 10 min. The solution was allowed to warrn to room
temperature and stirred for 10 h ... 1h~ reaction was monitored by TLC (100% ethyl
acetate). The reaction was cooled to ODC and quenched with IN HCI (7.1 mL, 7.13
mmol). The mixture was extracted ~ith Et20 (3 x 15 mL). The combined organic :J ~ ~ 1
extracts were washed with brine (1 x 45 mL), and dried over Na2S04. The volatiles were 1
evapo~ated to a residue that w~s purifi~?,by silica gel flash chromatography (10% eth yi
acetate/hexanes). Collection of the fracti~ns gave ester 60 as a white solid (0.35 g, 80%). ,,1' ,'!
Spectral data for 60 matched that reported in the literature.49
(E)-4-(Allyloxy)-2-methylbut-2-en-l-01 (61) ,',
o ° EtO'P)0(OEt °
1 ~ o .~OTBDMS
OEt ____ ~----_.~ EtO 1
NaH, THF, ooe ~ 30min, 23°C - 10 h OTBDMS
71
~O~ ~O~BDMS 75
j TBAF
THF, 23°C, 5h
30% over 4 steps
~O~ " ~OH
61
.. NaH, Allyl bromide
THF, 23°C, 10h
~'. ",
72 cisltrans 13:87
j DIBAL-H
DCM, -78°C, 2h
HO"ll ~OTBDMS
73
88
In' ':l round bottom flask, under nitrogèn, NaH (15.2 g, 0.38 mol) was washed with
anhydrous hexane (3 x 100 mL), taken up in anhydrous THF (500 mL), cooled to O°C,
and treated dropwise with tris(triethyl)phosphonoacetate (70.0 mL, 0.35 mol) monitoring
closely the release ofhydrogen.gas. The solution was allowed to stÎr at O°C for 1 h. The
solution gradually changed appearance, becoming transparent. Silyl ether 71 (55.0 g,
0.29 mol) was added diopwise at O°C to the reaction mixture, that was stirred for 0.5 h
and allowed to warm to room temperature, with stirring for 10 h. The reaction was
monitored by TLC (16% ethyl acetate/hexanes). The solution was quenched with water
(100 :mL) at O°C. The mixture was extiacted with Et20 (3 x 100 mL). The combined
organic extracts were washed with brine (1 x 100 mL), and dried over Na2S04. The
volatiles were evaporated to a residueas Cis:trans isomers (13:87, determined by LCMS:
Gimini C-18, 5 Il, 50 x 4.6 mm Column, 0.5 mUmin, 70% ACNIH20). The pale yellow . CI" .
oil was immediately carried over to tHe next reaction. Spectral data for 72 matched that
reported in the literature.5o In a round bottom flask, a solution of ester 72 (75.0 g, 0.29
mol) in anhydrous CH2Cb (500 mL) was cooled to -78°C, treated dropwise over 2 h with
DIBAL-H (697 mL, 0.69 mol), stirred at -78°C for 2 h, and monitored by TLC (13% ..
ethyl acetatelhexanes). The reaction was~quenched at -78°C with a saturated solution of
RochelIe's salt, and stirred at room tempe rature until a successful partition between the
two phases had been achieved. At times, the separation was achieved by adding more
Rochelle's salt. The mixture was extracted with EhO (3 x 100 mL). The combined
organic extracts were washed with brine (1 x 100 mL), and dried over Na2S04, and
evaporated to give crude 73 as a pale-yellow oil used without further purification.
50 Baldwin, 1. R.; Whitby, R. J. Chem. Comm. 2003,22,2786-2787.
89
Spectral data for 73 matched that. reported in the literature.5o In a round bottom under
nitrogen, NaH (15.2 g, 0.38 mol)was :washed with anhydrous hexane (3 x 100 mL),
suspended in anhydrous DMF'(500 mL), cooled to O°C, and treated dropwise with
alcohol 73 (63.0 ,g, 0.29 mol) monitoring c10sely the release of hydrogen gas. After
stirring for 1 h at O°C, the mixture was treated dropwise with allyl bromide (27.0 mL,
0.32 mol, previously passed through a:~short plug of basic alumina), stirred for 0.5 h,
warmed to room temperature, stirred' for 10 h, monitored by TLC (10% ethyl
acetate/hexap.es), cooled to O°C, and quenched with water (100 mL). The mixture was
extracted with Et20 (3 x 100 mL), dried over Na2S04, and evaporated to give crude 75 as
a pale-yellow oil, that was used without; further purification. In a round bottom flask,
silyl ether 75 (36.7 g, 0.14 mol) was dissolved in anhydrous THF (500 mL), cooled to
O°C, treated dr()pwise with TBAF (430 mL, 0.43 mol), and allowed to warm to room
temperature. The reaction was monitored by TLC (20% ethyl acetate/hexanes). After
stirring for 12 h, the reaction :was quenched with NaHC03 (500 mL), and extracted with
Et20 (3 x 250 mL).' The combined organic extracts were washed with brine (1 x 250
mL), dried over Na2S04, and evaporatedto give a residue that was purified by silica gel
flash chromatography (10% ethyl acetate/hexanes) to afford alcohol 61 as a pale-yellow
oil (8.10 g, 30% over four steps). IH l~R (400 MHz, CDCh) 8 5.83 (ddt, J = 17.1,
1O.S, 5.7 Hz, 1H), 5,51 (t,J=6.7Hz, 1H),5.19(dd,J= 17.1,3.3 Hz, 1H),5.10(dd,J=
10.5, 3.3 Hz IH), 3.95 (d, J = 6.7 Hz, 2B), 3.89 (m, 4H), 3.29 (s, 1H), 1.59 (s, 3H); I3C
NMR (100 MHz, CDCh) 8 139.2;1134.4, 120.5, 116.9, 70.9, 67.2, 65.9, 13.5; HRMS
(ESI) calculated for C8H1502 [M + Ht, 143.1067, found 143.1064.
90
Pentafluorobenzyl· . 5-«2E,6E)-3, 7 ,11-trimethyldodeca-2,6,1 0-trienoxy)-2-( (E)-4-
(allyloxy)-2-methylbut-2-enoxy)benzoate (64)
FV,y~:<IH M~ 01 .
F 0 OH 60
HO~ 65
PPh3' DIAD, THF, 6,10 h
."
r("O~ HO~
61
PPh3, DIAD
THF, 6,10 h 30% over two steps
In a round bottom flask, ester 60 (0.17 g, 0.51 mmol), a1cohol 65 (0.06 g, 0.25 mmol),
and PPh3 (0.11 g, 0.41 mmol) were dissolved in anhydrous THF (50 mL), heated to a
reflux using an oil bath, treated dropwise with DIAD (0.08 mL, 0.41 mmol) such that the
yellow color disappeared before the ne~t drop, and stirred for 4 h. The reaction was
monitored by TLC (13% ethyl acetate/hexanes). The solution was allowed to cool to
room temperature, treated with PPh3 ~ (0.05 g, 0.21 mmol) until the yellow color
disappeared, and evaporated to give'a residue that was further purified by silica gel flash
chromatography (5% ethyl acetate/nexanes). Evaporation of the collected fractions gave
phenol 76 as a pale-yellow oil (0.08 g, 55%), contaminated with traces of dialkylated
byproduct as indicated by both IH~NMR and I3C-NMR spectroscopy. Without any
91
further purification, phenol 76 was treated with alcohol 61 (0.03 g, 0.23 mmol), and PPh3
(0.10 g, 0.36 mmol), disso1ved ih anhydrous THF (50 mL), heated to a reflux using an oil
bath and treated dropwise with DIAD (0.07 mL, 0.36 mmol) such that the yellow color
disappeared before the next drop. ,The solution was stirred for 4 h, and monitored by
TLC (l3% ethyl acetate/hexanes). the reaction was allowed to cool to room
temperature, treated with PPh3 (0.05 g, 0.18 mmol) until the yellow color disappeared,
and evaporated to a residue that was purified by silica gel flash chromatography (5%
ethyl acetate/hexanes). Ether 64 wa,s .obtained as a pale-yellow oil (0.05 g, 30% over two
steps). lH NMR (300 MHz, CDCh) ù 7.33 (d, J = 3.1 Hz, lH), 7.01 (dd, J = 9.1, 3.1 Hz,
1H), 6.87 (d, J = 9.1 Hz, IH), 5.92 (ddt, J 17.1, 10.4,5.7 Hz, IH), 5.73 (t, J = 6.5 Hz,
IH), 5.45 (t, J = 6.6 Hz, 1H), 5.40 (s, 2H), 5.27 (dd, J = 17.1,3.1 Hz, 1H), 5.19 (dd, J =
10.4, 3.1 Hz, 1H), 5.09 (d, J = 5.3 Hz, 2H), 4.49 (d, J = 6.6 Hz, 2H), 4.42 (s, 2H), 4.05
(d, J = 6,5 Hz, 2H), 3.97 (dt, J = 5.7., ~.~.Hz, 2H), 2.05-1.92 (m, 8H), 1.72 (s, 6H), 1.67
(s, 3H), 1.59 (s, 6H); ,I3C NMR (75 MHz, CDCh) ù 165.2, 152.7, 152.3, 141.6, l35.4,
l34.8, l34.7, 131.3, 124.5, 124.3, 123;6 (2C), 120.8, 119.7, 119.2, 117.1 (2C), 115.4,
74.6, 71.2, 66.0, 65.5, 53.6, 39.7,.,\39.5, 26.7, 26.2, 25.7, 17.6, 16.6, 16.0, 13.8; HRMS
(ESI) calculated for C37H43FsOsNa [M'+iNar, 685.2924, found 685.2926.
,f '
(E}-Ethyl 7,II-dimethyl-3-oxododeca-6,10-dienoate (81)
HO~ I~ 79 . Nal. ACN. 23"C. O.5h 80
62%
'j
j NaH. n-BuLi
Ethyl A:etoacet~te THF.O C. 10mm;
23"C.10h 43%
EtO~ ~
81
92
In a round bottom flask, geraniol 79 (5.00 mL, 28.8 mmol), NaI (4.30 g, 28.8 mmol) and
anhydrous ACN (200 mL) were added. In the dark, the reaction was cooled to O°c,
treated with Amberlyst 15 (29.0 g) in portions over 15 min, and monitored every 5 min
by TLC (25% ethyl acetatelhexanes). Once no more geraniol was observed by TLC, the
solution was filtered to remove the resin, and evaporated in the dark at room temperature
to yield crude 80 (4.71 g, 62%), which was used without further purification. To avoid
using excess resin, the reaction must be closely monitored following each addition of
Amberlyst 15, and filtered immediately after a11 the geraniol had been consumed.
Spectral data for 80 matched that reported in the literature.51 In a round bottom flask
under nitrogen, NaH (0.08 g, 1.92 mmol) was washed with anhydrous hexane (3 x 10
mL), suspended in anhydrous THF (10 mL), cooled to O°C, treated dropwise with
ethylacetoacetate (0.20 mL, 1.54 mmol) monitoring cIosely the release of hydrogen gas.
The reaction was stirred for 10 min. n-BuLi (0.81 mL, 1.92 mmol) was added, and the
51 (a) Tajbakhsh, M.; Hosseinzad~h, R.; Lasemi, Z.; Rostami, A. Synth. Commun. 2005,35,2905-2911. (b) Tajbakhsh, M.; Hosseinzadeh, R.; Lasemi, Z. Synlett 2004, 4, 635-638.
93
solution was allowed to warm to room temperature. After stirring for 1 h, geranyl iodide
80 (0.20 g, 0.77 mmol)'was added to t~~Jeaction mixture, which was stirred for 1 h, and
. '\'.
monitored by TLC (5% ethyl acetate/hexanes). The solution was cooled to O°C,
quenched with 10% AcOH (10 mL), and extracted with Et20 (3 x 25 mL). The combined
organic extracts were washed with brine (1 x 10 mL), dried over Na2S04, and evaporated
to give a residue that was purified by silica gel flash chromatography (5% ethyl
acetate/hexanes). Ester 81 was obtained as a pale-yellow oil (0.09 g, 43%) and exhibited
spectral data as reported in the literature.52
,\} ,
Geranyl bromide (87)
1 1 PPh3• CBr4 ~OH ..
. DCM. Q·C. 1.5h. Dark ~Br 79 l ''', 99% 87
In a' round bottom flask in the dark, geraniol 79 (3.00 mL, 17.1 mmol) and PPh3 (6.73 g,
l' .
25.6 mmol) were treated with anhydrous' CH2Clz (170 mL), cooled to O°C, and treated
with CBr4 (8.5 g, 25.6 mmol) over 0.2'5 h, stirred for 1.5 h, and monitored by TLC (13%
ethyl acetate/hexanes). The solution was treated with cold hexanes (100 mL), and
transferred to a separatory funnel. The bottom layer, a pale orange oil, was removed and
discarded. The top layer, a milky white solution, was evaporated to a white residue that
was treated with co Id hexanes (50 ml.) and filtered using high vacuum filtration. The
filtrate was evaporated to a pale-yellow oil that was treated with co Id hexanes (50 mL)
and filtered through a short plug of silica gel under high vacuum. The plug was washed
three times with cold heXanes (3 x 50 mL) and the filtrate was evaporated to a pale-. "
52 Xie, H.; Shao, Y.; Becker, J. M .. ; Naider, F.; Gibbs, R. A. J. Org. Chem. 2000, 65, 8552-8563.
94
yellow oil (3.70 g, 99%) that was used immediately in the next reaction step. Spectral
data for bromide 87 matched that.reported in the literature.53 The product was stored in
the freezer (-20°C) for several days.
.1 ~ ,
Pentafluorobenzyl 5-«2Z,6E}-3,7,11-trimethyldodeca·2,6,lO.trienoxy)-2-((E)-4-
(aUyloxy)-2-methylbut-2-enoxy.)benzoitte (59)
M F 0 OH
60
H~F~ PPh3• DIAD »~~ F ~
----------~. h: 1 THF. 6.10 h "
01 FO OH
92a
, 0 'J' ~ HO 61
PPh3• DIAD
THF, 6, 10 h
30% over two steps
\ l ( ll} •
Follow experirnental for pentafluorobenzyl 5-«2E,6E)-3,7,II-trirnethyldodeca-2,6,1O-t l'l,' , ....
trienoxy)-2-«E)-4-(allyloxy)-2-methylbut-2-enoxy)benzoate (64). lH NMR (400 MHz,
CDCb) Ù 7.33 (d, J = 3.1 Hz, IH), 7.01(dd, J = 9.1, 3.1 Hz, IH), 6.87 (d, J 9.1 Hz,
IH), 5.92 (ddt, J = 17.1, 10.4, 5.7, Hz, IH), 5.73 (t, J = 6.5 Hz, IH), 5.47 (t, J 6.6 Hz,
IH), 5.40 (s, 2H), 5.27 (dd, J = 17.1,),l,Hz, IH), 5.19 (dd, J= 10.4,3.1 Hz, IH), 5.11-: \ .
53 Durst, H. D.; Liebeskind, Li. Drg. Chem. 1974,39,3271-3.
95
5.05 (m, 2H), 4.49 (d, J = 6.6 Hz, 2H), 4.42 (s, 2H), 4.05 (d, J = 6.5 Hz, 2H), 3.97 (dt, J
= 5.7,1.2 Hz, 2H), 2.12-2.03 (m, 6H), 1.99-1.95 (m, 2H), 1.79 (s, 3H), 1.72 (s, 3H), 1.67
(s, 3H), 1.59 (s, 6H); l3C NMR (75 MHz, CDCh) 0 165.2, 152.6, 152.2, 141.9, 135.7,
134.7,134.6,131.2,124.3,124.1,124.1,123.2,120.6, 119.8, 119.6, 117.1, 117.1, 115.2,
74.4, 71.1, 65.9, 64.0, 53.5, 39.5, 32.2, 26.5, 26.0, 24.4, 17.5, 16.5, 15.8, 13.7; HRMS
(ESI) calculated for C37H44F505 [M + Ht, 663.3103, found 663.3101.
Cyclophane (58)
~ F 0 F 0 ~
~~'1 Grubbs Il (10mol %) .. ~ F.W" 1 b F ~ 1 Ti(Oi-Prl4. DCM, 6, 18 h 1 b F. 1 b 14 ~
7-10%
FO) FOO
59 '( 58
~O
To a flame dried three neck round bottom flask equipped with a reflux condenser under
nitrogen, 2nd Generation Grubbs Catalyst (0.002 g, 0.003 mmol) and anhydrous CH2Ch
(100 mL) were added. The solution was heated to a reflux and treated dropwise with a
solution of ester 59 (0.03 g, 0.05 mmol) and Ti(Oi-Pr)4 (0.07 mL, 0.25 mmol), dissolved
in CH2Ch (30 mL) over 1 h using a syringe pump. The reaction was allowed to stir at
reflux for 10 h and was monitored by TLC (10% ethyl acetate/hexanes). The reaction
was quenched with ethyl vinyl ether (5 mL), evaporated down to about 1 mL, and
purified by silica gel flash chromatography (5% ethyl acetate/hexanes). Macrocycle 58
was obtained as a pale-yellow oil (0.002 g, 7%). IH NMR (300 MHz, CDCh) 0 7.26 (d,
96
J= 3.1 Hz, 1H), 7.12 (dd, J= 9.1, 3.1 Hz, 1H), 6.83 (d, J= 9.1 Hz, 1H), 5.38 (s, 2H),
5.41-5.37 (m, 2H), 5.23 (t, J = 7.6 Hz, 1H), 4.54-4.50 (m, 4H), 2.10-2.05 (m, 2H), 1.98-
1.93 (m, 2H), 1.81-1.77 (m, 2H), 1.67 (s, 3H), 1.52 (s, 3H), 1.46 (s, 3H), 1.38-1.32 (m,
2H); 13C NMR (75 MHz, CDCh) cS 165.0, 152.9, 151.6, 144.5, 132.2, 130.6, 130.6,
128.3, 126.0, 123.9, 123.2, 119.8, 119.4, 116.0, 74.1, 68.0, 53.6, 38.9, 31.7, 27.0, 25.0,
23.6, 15.3, 13.2; HRMS (ESI) calculated for CZ9H30Fs04 [M + Ht, 537.2059, found
537.2047.
(2Z,6E)-1-t-Butyldiphenylsilyloxy-3, 7 ,11-trimethyl-2,6,1 O-dodecatriene (95)
r '<::::
1 OH
62
TSDPSCI
Imid, DMF, 23°C, 30 min
90% 0 -<:::
1 OTSDPS
95
In a round bottom flask, alcohol 62 (1.23 g, 5.53 mmol), imidazole (0.56 g, 8.30 mmol),
and TBDPSCI (1.70 mL, 6.64 mmol), were dissolved in anhydrous DMF (10 mL), and
stirred at room temperature for 0.5 h. The reaction was monitored by TLC (13% ethyl
acetate/hexanes). The reaction was partitioned between hexanes and water (83:17). The
mixture was extracted with EtzO (3 x 50 mL). The combined organic extracts were
washed with saturated NaHC03 (1 x 10 mL) and brine (1 x 10 mL), dried over NaZS04,
and evaporated to a residue that was further purified by silica gel flash chromatography
(100% hexanes, 1 column volume (cv), 2% ethyl acetate/hexanes, 1 cv, 5% ethyl
acetate/hexanes). Ether 95 was obtained as a pale-yellow oil (2.24 g, 90%). IH NMR
(400 MHz, CDCh) cS 7.68-7.66 (m, 4H), 7.38-7.37 (m, 6H), 5.39 (t, J = 6.2 Hz, 1H), 5.05
(t, J = 7.0 Hz, 1H), 4.99 (t, J = 5.8 Hz, IH), 4.19 (d, J = 6.2 Hz 2H), 1.95-1.85 (m, 8H),
97
1.70 (s, 3H), 1.66 (s, 3H), 1.57 (s~ 3H), 1.50 (s, 3H), 1.04 (s, 9H); 13C NMR (75 MHz,
CDCi))'ù 137.5, 135.6 (4C), 135A; .134.8, 134.0, 131.3 (2C), 129.5, 128.3 (4C), 124.8,
124.3, 123.7, 60.8, 39.6, 32.2, 26.8 (2C), 26.6, 25.7, 23.4, 19.2, 17.7, 15.9, -5.6 (2C);
HRMS (ESI) ealeulated for C31~40SiNa{M + Nat, 483.3054, found 483.3067.
(2Z,6E,10Z)-3,7-Dimethyldodeca,.2~6',10 .. trien-l-ol (93)
0 """ 1 OTBDPS
99
TBAF
THF. 23°C, 5h
65%
.. 0.""" 1 OH 93
A solution ofsilyl ether 99 (1.10 g, 2.46 mmol) in THF (50 mL) was treated with TBAF
(7.40 mL, 7.39 mmol, 1 M) ançl stirred àt room temperature for 5 h. The reaetion was
monitored by TLC (25% ethyl aeetate/hexanes). The solvent was evaporated and the
residue was partitioned between satutated NaHC03 (50 mL) and ethyl aeetate (50 mL).
The aqueous layer was extraeted with'ŒtOAe (3 x 50 mL). The eombined organies were
washtid with brine (1 x 50 mL), dried over Na2S04, evaporated to a residue that was
purified by si lie a gel flash ehromatography (10% ethyl aeetate/hexanes to 33% ethyl
aeetate/hexanes). A1cohol 93 was obtained as a pale-yellow oil (0.33 g, 65%). 1H NMR
(300 MHz; CDCi)) ù 5.40-5.29 (m; 3H);.5.12 (t, J= 4.7 Hz, 1H), 4.10 (d, J= 6.4 Hz,
'. 13 2H),-2.19-2.08 (m, 8H), 1.75 (s, 3H), 1.61 (s, 3H), 1.59 (s, 1H), 1.57 (s, 3H); C NMR
(75 MHz, CDCi)) ù 140.1, 135.7, 130.1, 124.3, 123.9, 123.7,59.0,39.3,31.9,26.5,25.4,
23.4, 15.9, 12.8; HRMS (ESI) ealèulated for C 14H250 [M + Ht, 209.1899, found
209.1900.
98
Pentafluorobenzyl .,··5-( (2Z,6E,1 OZ}:-3, 7 -dimethyldodeca-2,6,1 O-trienoxy)-2-«E)-4-
(allyloxy)-2-methylbut-2-enoxy)benzoate (94)
60
___ P_P----'h3"--, D_IA_D____ F, 1: F : 1 THF, 1'., 10 h 0 1
, . 1 •
F 0 OH
100
94
PPh3 , DIAD
THF,t., 10 h
30% over two steps
Follow experimenta1 for pentafluorobenzy1 5-«2E,6E)-3, 7, 11-trimethy1dodeca-2,6, 1 0-
. ' 1 tnenoxy)-2-«E)-4-(ally1oxy)-2-methy1but-2~enoxy)benzoate (64). H NMR (300 MHz,
CDCh) Ù 7.33 (d, J = 3.1 Hz, 1H),. 7.0T::(dd, J = 9.1, 3.1 Hz, 1H), 6.87 (d, J = 9.1 Hz,
1H), 5.92 (ddt, J = 17.1, 10.7, 5.7 Hz, 1H), 5.73 (t, J = 6.1 Hz, 1H), 5.47 (t, J = 6.2 Hz,
1H), 5.42-5.37 (m, 3H), 5.27 (dd, J = '17.1,3.3 Hz, 1H), 5.19 (dd, J = 10.7,3.3 Hz, 1H),
5.16-5,10 (m, 1H), 4.45 (d, J =6~6'Hz, 2H), 4.42 (8, 2H), 4.05 (d, J = 6.5 Hz, 2H), 3.97
(dt, J = 5.7, 1.2 Hz, 2H), 2.16-2.Ui J(m;l6H), 2.04-1.99 (m, 2H), 1.79 (8, 3H), 1.72 (8,
3H), 1.64-1.60 (m, 6H);. \3e NMR (75 MHz, CDCh) ù 165.2, 152.7, 152.3, 141.1, 135.6,
134.8, 130.2, 124.5, 123.8, 123.7, 123.5, 120.7, 120.0, 119.7, 117.1 (3C), 115.4, 74.6,
99
71.2, 66.0, 65.1, 53.6, 39.3, 32.4, 26.5, 25.4, 23.5, 15.9, l3.9, 12.7; HRMS (ESI)
calculated for C361:142F505 [M + H]+, 639.2947, found 649.2935.
1
Methyl 2-bromo-5-(9-methyldec-8-enyl)benzoate (l08) , . . .
M'O~ ',.
o Br
+ ~Br l-BuLi. ZnBr2. Pd(PPh3)4 ------=-...:.---::.;..:......... MeO 1 THF. WC. 18h
20% 0 Br
101 107 108
To a round bottom flask containing anhydrous THF (5 mL) -78°C, t-BuLi (0.70 mL, 0.90
mmol) was added dropwise followed by a solution ofbromide 107 (0.11 g, 0.38 mmol) in
THF (5 mL). The reaction was allowed to stir for 0.5 h at -78°C and the ex change was
monitored by TLC (100% hexanes). A solution of ZnBr2 (0.10 g, 0.45 mmol) in THF
(1.0 mL) was added to the -78°C solution which was stirred for 1 h, allowed to warm to
room temperature, and stirred for an add~tional 1 h. The reaction was monitored by TLC
(100% hexanes). The zincate solution transferred by syringe to a round bottom flask
containing a solution of ester 101 (0.11 g, 0.37 mmol) and
t,etr~~s(triphenylphosphine)pal1adium \~'e3 g, 0.03 mmol) in anhydrous THF (2 mL).
The reaction mixture was stirred for 12h at 55°C, and was monitored by TLC (20% ethyl
acetatelhexanes). The reaction was coole.d to 23°C, quenched with NaHC03 (50 mL) and
the mixture was extracted with EhO (3 x 20 mL). The combined organic extracts were , .
washed with brine (1 x 20 mL), dried.over Na2S04, and evaporated to give a residue that " \ l '
was purified by silica gel flash chromatography (10% ethyl acetatelhexanes). Bromide
108 was obtained as a pale-yellow oil (0.03 g, 20%). IH NMR (300 MHz, CDCb) ô 7.98
100
(d, J= 2.2 Hz, 1H), 7.52 (dd, J= 8.3;'2.2 Hz,lH), 7.12 (d, J= 8.3 Hz, 1H), 5.11 (t, J=
7.1 Hz, 1H), 3.89 (s, 3H), 2.92-2.88 (m, 2H), 2.00-1.94 (m, 2H), 1.68 (s, 3H), 1.59 (s,
3H), 1.40-1.31 (m, lOH); 13C NMR (75 MHz, CDCb) ô 167.7, 144.6, 135.5, 134.2,
133.4, 132.0, 132.0, 125.7, 119.9, 53.0, 34.7, 32.5, 30.7, 30.5, 30.2, 30.1, 28.9, 26.6,
18.5; HRMS (ESI) calculated for C19H28Br02 [M + Ht, 367.1267, found 367.1261.
ï ~ j- , :
Iso-propyl 2,5-diiodobenzoate (120)
HoA -D-M-i~_" :-o~_H:-:-2-P;-:C-, 1-0h-' '-0 6 87% / W
o 1
121 , .\'t. i'
o 1
120
In a round bottom flask, under nitrogeQ. atmosphere, NaH (0.08 g, 2.00 mmol) was
washed with hexane (3 x 50 mL), suspe!1.ded in anhydrous DMF (20 mL), cooled to O°C,
treated dropwise with a solution ~f 2,5-diiodobenzoic acid 121 (0.50 g, 1.34 mmol) in
DMF (5 mL), stirred for 0.5 h, treared ~ith iso-propyl iodide (0.15 mL, 1.47 mmol), . , ..
warrned to room temperature, and stirred for 12 h. The reaction was monitored by TLC
(25% ethyl acetate/hexanes). The solvent was evaporated and the residue was taken up in
Et20 (50 mL), and treated with sa,turat~d NFl4Cl solution (25 mL). The aqueous phase
was extracted with Et20 (3 x 50 mL).;, T~e combined organic extracts were washed with
brine (1 x 25 mL) dried over Na2S04, and evaporated to give a residue that was purified
by silica gel flash chromatography (10% ethyl acetate/hexanes). Ester 120 was obtained
as a pale-yellow oil (0.48 g, 87%)., IH NMR (300 MHz, CDCb) ô 8.01 (d, J = 2.2 Hz,
1H), 7.64 (d, J= 8.3 Hz, 1H), 7.40 (dd, J,F 8.3, 2.2 Hz, 1H), 5.25 (sept., J = 6.3 Hz, 1H), • 1 \ ~
101
1.39 (s, 3H), 1.37 (s;.3H); J3C NMR (75 MHz, CDCI) 3 164.6, 142.5, 141.1, 139.1,
137.5,93.2,93.1, 70.0,21.8,21.8; HRMS (ESI) calculated for CIOHIOIz02Na [M + Nat,
438.8662, found 438.8650.
(E)-4-(Allyloxy)-2-methylbutM 2-enyl acetate (126)
fi"o~ HO~
61 23·C.10h
96%
fi"o~ ACO~
126
In a round bottom flask were actded alcohol 61 (5.50 g, 38.7 mmol) and Ac20 (4.40 mL,
46.4 mmol), followed bydistilled pyridine (3.8 mL, 46.4 mmol) at O°C. The reaction
was stirred for 10 h at room temperature and was monitored by TLC (25% ethyl
acetate/hexanes). The reaction. mixture was purified as is by silica gel flash
chromatography (25% ethyl ace~ate/hexanes) to give acetate 126 as a pale-yellow oil
(6.83 g, 96%). l H NMR (400 MHz, CDCh) 3 5.88 (ddt, J = 17.1, 10.5,5.7 Hz, IH), 5.60
(t, J= 6.6 Hz, 1H), 5.24 (dd,J = 17.1,:3.0 Hz, 1H), 5.15 (dd, J 10.5,3.0 Hz, IH), 4.45
(s, 2H), 4.00 (d, J = 6.6 Hz, 2H), 3.9.4 (dt, J = 5.7, 1.2 Hz, 2H), 2.04 (s, 3H), 1.66 (s, 3H);
J3e NMR (lOI MHz, CDCb) 3 170.6, 134.6, 133.8, 124.5, 117.1, 71.2, 68.8, 65.9, 20.8,
14.1; HRMS (ESI) calculated for CIOHI603Na [M + Nat, 207.0992, found 207.0996.
Iso-propyI2-«E)-4-(allyloxy)'-2-methylbut-2-enyl)-5-iodobenzoate (124)
120
AcQ 1 Q, 126 S~
1, i-PrMgBr (1,8 eq), THF, -40·C, 30min
2,126. Li2CUCI4, THF, -40°C
2min inverse addition
3, THF, -40·C, 1,5h; 23·C, 1h
,80% '
124
102
In a round bottom flask, a solution of iso-'propyl ester 120 (6.87 g, 16.5 mmol) dissolved
in anhydrous THF (55 mL) was added. The solution was cooled to -40°C and treated ~j i
dropwise with i-PrMgBr (7.60 mL, 19.& ~mol) affording a color change from c1ear to
yellow. The solution was stirred for 0.5 h and the Mg-I exchange was monitored by GC ",1
analysis (exchange intennediate Rt = 12.85 min). The Grignard reagent solution was
transferred over 2 minutes via cannula to a second round bottom flask containing
LhCuCl4 (2.2 mL, 1.10 mmol) and acetate 126 (2.00 g, 11.0 mmoI) in anhydrous THF " ,
J '. ;
(55 mL) at -40°C affording a color change from dark red to clear and then to orange. The
reaction was stirred for 1 h at -40°C, warmed to room temperature, and stirred for 1 h.
The reaction was monitored by TLC (10% ethyl acetatelhexanes). The reaction was
quenched with saturated NH4CI solution (1 x 55 mL), diluted with water (1 x 55 mL), and ", .l
extracted with Et20 (3 x 55 mL). The combined organic ex tracts were washed with
NH40H (1 x 55 mL) and brine (1 x 55 mL), dried over Na2S04, and evaporated to a
residue that was purified by silica gel flash chromatography (5% ethyl acetatelhexanes).
Iodide 124 was obtained as a yellow oil (3.60 g, 80%). IH NMR (300 MHz, CDCh) 8
8.10 (d, J = 1.8 Hz, IH), 7.69 (dd, J = 8.1, 1.8 Hz, IH), 6.96 (d, J = 8.1 Hz, IH), 5.88
103
(ddt, J = 17.3, 10.5,5.7 Hz, 1H), 5.28~5.23 (m, 2H), 5.21-5.16 (m, 2H), 3.97 (d, J = 6.5
Hz, 2H), 3.91 (d, J = 5.7 Hz, 2H), 3.64 (s, 2H), 1.63 (s, 3H), 1.34 (s, 3H), 1.32 (s, 3H);
I3C NMR (75 MHz, CDCh) 8. 165.7, 140.2, 139.9, 138.9, 138.7, 134.8, 133.1, 133.0,
• 1
122.9, 117.0,90.8,71.0,68.8,66.4,42.3,. 21.8, 21.8, 16.9; HRMS (ESI) ca1cu1ated for
, + .),1,
ClsH23I03Na [M + Na] ,437.0582, found 437.0584.
(2Z,6E,1 OZ)-3, 7-Dimethyldodeca-2~6~tO::!trienyl acetate (131)
~ '93 OH
.. ~ 131 OAc
23 ~c, 10 h
. l;. . . Follow experimenta1 for (E)-4-(ally10xy)-2-methy1but-2-eny1 acetate (126). The reaction
w~s allowed to stir for 10 h at room terhperature and was monitored by TLC (25% ethy1
acetate/hexanes). The reaction miXt~re was purified as is by si1ica gel flash
chromatography (13% ethy1 acetate/hexànes) to give acetate 131 as a pa1e-yellow oi1
1 ,,!' . .' (96%). H NMR (300 MHz, CDCh) 85.50-5.39 (m, 3H), 5.12 (t, J = 6.1 Hz, 1H), 4.56
~ ... , \' ~]'
(d, J = 7.3 Hz, 2H), 2.18-2.07 (m, 8H), 2.05 (s, 3H), 1.77 (s, 3H), 1.61 (s, 3H), 1.59 (s,
3H); I3C NMR (75 MHz, CDCh) 8 171.1, 142.7, 135.6, 130.2, 123.8, 123.5, 119.1,61.1,
. . 39.4,32.1,26.5,25.4,23.5,21.1, 15.9, 12.8; HRMS (ESI) ca1cu1ated for C16H2602Na [M
+ Nat, 273.1825, found 273.1827. . ) l
104
Iso-propyl . 2-«E)-4-(allyloxy)-2-methylbut-2-eoyl)-S-«2Z,6E,10Z)-3,7-
dimethyldodecà-2,6,1 O-trieoyl)beozOtite (132)
Follow
CO ~24 ~
~131 , l" \ OAc
1, i-PrMgBr (3,Oeq). THF. -40·C. 15min
2min inverse addition
3, THF. -40·C. 1 ,5h; 23°C. 1 h
50%
'"
•
132 P' OJ
experimental ,for iso-prppyl , , 2-( (E)-4-( allyloxy)-2-m ethylbut -2-enyl)-5-
iodobenzoate (124): The Mg-I exchange reaction was allowed to stir for 0.25 h. The
crude residue was purified by silica gel''flà.sh chromatography (5% ethyl acetatelhexanes)
to afford olefin 132 as a pale yellôw oil'(0.24 g, 50%). lH NMR (400 MHz, CDCh) ù
, "l'
7.61 (s, 1H), 7.21 (d, J 7.9 Hi, IH),' 7.13 (d, J = 7.9 Hz, 1H), 5.90 (ddt, J = 17.3, 10.5,
5'.7 Hz, 1H), 5.48-5.30 (fi; 8H), 3.99 (cl; J 6.7 Hz, 2H), 3.93 (d, J = 5.7 Hz, 2H), 3.67
(s, 2H), 3.35 (d, J 7.2 Hz, 2H), 2.l3 (in, 6H), 2.01 (m, 2H), 1.76 (s, 3H), 1.65 (s, 3H),
1.62 (s, 6H), 1.35 (s, 3H), 1.33 (s, 3H); 13C NMR (101 MHz, CDCh) ù 167.6, l39.8
(2C), 137.4, l36.7, l35.2 (2C), 131.3'(2C), 130.3 (2C), 123.8, 123.5, 123.3, 122.3 (2C),
117.0, 70.9, 68.2, 66.5, 42.5; 39.4, 33.5, 32.0, 26.5, 25.4, 23.5, 21.9 (2C), 16.9, 16.0,
12.8; HRMS (ESI) calculated for C32R n03 [M+Ht, 479.3520, found 479.3522.
105
Iso-propyl 3-iodobenzoate (134)
HO~ o 133
NaH, i-Prl i ..
DMF, 23°C, 10h 87% ~O~
o 134
.(.\
Follow experimental for iso-propyl 2,5-diiodobenzoate (120). The crude residue was -
purified by silica gel flash chromato'~à.p~y (10% ethyl acetatelhexanes) to afford iodide
134 as a white solid {0.45 g, 87%). IH NMR (300 MHz, CDCb) Ô 8.35 (s, IH), 7.99 (d, J
= 1.6 Hz, IH), 7.85 (d, J = 1.6 Hz, IH), 7.16 (t, J = 8.0 Hz, IH), 5.23 (sept., J = 6.3 Hz,
IH), 1.37 (s, 3H), 1.35 (s, 3H); 13C NMR (75 MHz, CDCb) Ô 164.5, 141.4, 138.3, 132.7,
129.9, 128.6, 93.7, 68.~, 21.9 (2C). lodide 134 proved too unstable for HRMS by FAB,
API, El, CI; product could not be ionized.
(2Z,6E)-3, 7 ,11-Trimethyldodeca-2,6,1 O-triene acetate (136) \ . .:
A~O, Py •
HO 23 oc, 10 h AcO
96%
62 136
To a round bottom flask, AC20 (0.46 mL, 4.88 mmol) and pyridine (0.39 mL, 4.88 mmol)
followed by a1cohol 62 (0.90 g, 4.07 mmol) were added. The solution was stirred at
room temperature for 10 h, and the reaction was monitored by TLC (25% ethyl
acetate/hexanes). Once complete, the reaction mixture was purified by silica gel flash
chromatography (10% ethyl acetate/hexanes). Acetate 136 was obtained as a pale-yellow
oil (1.03 g, 96%). IH NMR (400 MHz, CDCb) Ô 5.30 (t, J = 7.3 Hz, IH), 5.08-5.03 (m,
106
2H), 4.50 (d, J = 7.3 Hz, 2H), 2.05 (t, J 4.9 Hz, 4H), 2.03-2.00 (m, 2H), 1.96 (s, 3H),
1.95-1.92 (m, 2H), 1.70 (s, 3H), 1.61 (s, 3H), 1.54 (s, 6H); 13C NMR (101 MHz,
CDCh) cS 170.6, 142.2, 135.5, 131.0, 1174.1, 123.2, 119.0,60.8,39.5,31.9,26.4,26.3,
25.4, 23.2, 20.7, 17.4, 15.7; HRMS (ES!) calculated for C17H2802Na [M + Nat,
287.1982, found 287.11981.
Iso-propyl 3-( (2Z,6E,1 OZ)-3, 7-dimethyldodeca-2,6,1 O-trienyl)benzoate (135)
~o~ o 134
~131 OAc
1. i-PrMgBr (3.0eq), THF, -40·C, 15min
2.
2min inverse addition 3. THF. -40·C, ~ .5h; 23°C, 1 h
, 80% '"
Follow experimental for iso-propyl 2-«E)-4-(allyloxy)-2-methylbut-2-enyl)-5-
iodobenzoate (124). The residue was purified by silica gel flash chromatography (5%
ethyl acetate/hexanes) to afford olefin 135 as a yellow oil (0.53 g, 80%). lH NMR (300
MHz, CDCb) cS 7.85 (s, 2H), 7.35 (s, 2H)," 5.33 (t, J 6.7 Hz, 1H), 5.24 (apparent septet,
J = 6.3 Hz, IH), 5.16 (t, J = 6.4, Hz, 1H), 5.09 (t, J 6.7, Hz, IH), 3.40 (d, J = 7.3 Hz,
2H), 2.19-2.15 (m, 4H), 2.10-2.06 (m, 2H), 2.02-1.90 (m, 2H), 1.76 (s, 3H), 1.68 (s, 3H),
/'! . 13 1.61 (s, 3H), 1.60 (s, 3H), 1.37 (s, 3H), 1.35 (s, 3H); C NMR (75 MHz, CDCb) cS
,
166.3,142.1,136.9,135.4,132.7,131.3,130.9,129.4,128.2, 127.0, 124.3, 123.9, 123.1,
68.2, 39.7, 33.9, 32.0, 26.7, 26.5, 25:7, 23.5, 21.9 (2C), 17.7, 16.0; HRMS (ESI) , .
calculated for C25H3702 [M + Ht, 369.2788, found 369.2790.
107
3,5,:,Bis(trifluoromethyl)benzyl. ' 5-( (2Z,6Z,1 0Z)-3, 7-dimethyldodeca-2,6,1 0-
trienyloxy)-2-((E)-4-(allyloxy)-2-methylbut-2-enyloxy)benzoate (139)
,', .
. ) l.
~' Br#CF
3
138
139
137
Et3N
DMF, 23°C, 24h
80%
In a round bottoIn flask equipped with"a reflux condenser, ester 94 (0.05 g, 0.10 mmol),
" . was dissolved in a 1:1 mixture of toluene:methanol (10 mL), heated to a reflux, treated
with NaOH pellets (0.05 g, 1.32 mmol); and stirred for 24 h. The reaction was monitored
by TLC (13% eth yi acetate/hexanes). The solvent was removed by evaporation under
reduced pressure, dissolved in ethyl acetate, quenched with 1 N HCI (6.50 mL, 6.50
mmol), extracted with Et20 (3 x 20' mL), washed with brine, dried over Na2S04, and
evaporated to afford olefin 137 (0:11 "g,0.22 mmol) that was dissolved in anhydrous
DMF (22 mL), cooled to O°C, treated dropwise with Et3N (0.04 mL, 0.25 mmol), stirred
for 0.5 h, treated with bromide 138 (0.04 mL, 0.22 mmo1, which prior to addition was
108
passed through a short plug of basic alumina), and stirred for 10 h at room temperature.
The reaction was monitored by TLC, ,(50% ethyl acetate/hexanes). The solvent was
removed by evaporation, and the residue was taken up in Et20 (20 mL). The solution
was quenched with IN HCI (5 mL), extracted with Et20 (3 x 20 mL), washed with a 10%
aqueous CUS04 solution (3 x 20 mL), brine (1 x 20 mL), dried over Na2S04, and
evaporated to a residue that was purified by silica gel flash chromatography (10% ethyl
acetate/hexanes) to afford es~er 139 as a pale-yellow solid (0.13 g, 80%). I H NMR (300
MHz, CDCh) ô 7.92 (s, 2H), 7.84 (s, 1H), 7.38 (d, J = 3.1 Hz, 1H), 7.03 (dd, J = 9.1, 3.1
Hz, 1H), 6.91 (d, J = 9.1 Hz, 1H), 5.89 (ddt, J = 17.1, 10.4,5.7 Hz, 1H), 5.74 (t, J = 5.9
Hz, 1H), 5.49 (t, J = 5.6 Hz, 1H), 5.45 (s, 2H), 5.36 (m, 2H), 5.25 (dd, J = 17.3, 3.3 Hz,
1H), 5.17 (dd, J = 10.4, 3.3 Hz, 1H), 5.11-5.01 (m, 1H), 4.48-4.45 (m, 4H), 4.03 (d, J =
6.4 Hz, 2H), 3.94 (dt, J= 5.7, 1.3 Hz, 2H), 2.14-2.12 (m, 6H), 2.01-2.00 (m, 2H), 1.79 (s,
3H), 1.69 (s, 3H), 1.63-1.59 (m, 6H); 13C NMR (75 MHz, CDCh) Ô 165.8, 152.6, 152.4,
142.1, 138.8, 135.6, 134.7, 134.5, 131.0, 128.0, 125.3, 125.1, 124.9 (2C), 124.7, 124.6, . . " !"
123.8,123.4,121.9,120.2,117.1,116.9,115.4,74.3,71.2, 66.0, 65.1, 64.9, 39.3, 32.3,
26.5, 25.4, 23.5; 15.9, 13.8, 12.7; HRMS (ESI) calculated for C38H4sF60s [M + Ht, ), '.;
695.3166, found 695.3161.
,. .f
" 1
109
Cyclophane (140)
Follow experimental procedure cyclophane (58) for the preparation of cyclophane 140.
The crude reaction mixture was purified by silica gel flash chromatography (5% ethyl
acetate/hexanes) to afford cyclophane 140 as a pale-yellow oil (l3.6 mg, 47%). 'H NMR
(400 MHz, CDCh) 8 ppm 7.91 (d, J = 3.0 Hz, 1H), 7.71 (s, 1H), 7.58 (s, 2H), 7.02 (dd, J
9.0,3.0 Hz, 1H), 6.67 (d, J = 9.1 Hz, 1H), 5.47 (t, J 8.1 Hz, 1H), 5.25 (t, J 7.0 Hz,
1H), 4.88 (s, 2H), 4.67 (t, J = 6.3 Hz, 1H), 4.54-4.49 (m, 4H), 2.09-2.05 (m, 2H), 2.05-
1.97 (m, 2H), 1.91-1.88 (m, 2H), 1.61 (s,3H), 1.54 (s, 3H), 1.45 (s, 3H), 1.52-1.49 (m,
2H); I3C NMR (lOI MHz, CDCh) 8 165.7, 152.8, 151.6, 144.5, 139.0, 132.2, 132.0,
131.7, 130.4, 128.0, 127.6, 126.0, 124.1, 123.4, 121.8, 119.8, 119.4, 115.8, 73.6, 68.1,
64.7,39.0,31.7,27.1,25.0,23.6,15.4,13.2; HRMS (ESI) calculated for C3,H33F604 [M
+ Ht, 583.2278, found 583.2289.
110
Iso-propyl 2-( (E)-4-(but-3-enyloxy )-2-methylbu t-2-eny 1)-5-( (Z}-dodec-1 O-enyl)
benzoate (167)
~OH ) 166 DCM. QOC. 2h. Dark
99%
.. ~sr ) 161
I-SuU. ZnCI2• 161
PdCl2dppf. 124
THF. 55°C. 18h
20% 124
o :7 O~
167
o~
Follow experimental for geranyl bromide (87) for the preparation of bromide 161 that
was obtained as a pale-yellow oil (4.17 g, 99%) and was used without further
purification. Follow experimental for methyl 2-bromo-5-(9-methyldec-8-enyl)benzoate
(108) for the preparation of olefin 167. The zincate was added to a solution ofiodide 124
(0.11 g, 0.37 mmol) and PdCh(dppf) catalyst (0.03 g, 0.03 mmol), dissolved in
anhydrous THF (2 mL). The solvent was evaporated to give a residue that was purified
by silica gel flash chromatography (10% ethyl acetate/hexanes) to afford olefin 167 as a
pale-yellow oil (35.6 mg, 20%). I H NMR (400 MHz, CDCh) 0 7.61 (s, IH), 7.19 (d, J=
7.7 Hz, IH), 7.11 (d, J= 7.7 Hz, lH), 5.88 (ddt, J = 17.1,10.4,5.7 Hz, IH), 5.47-5.39
(apparent dt, IH), 5.27-5.19 (m, 4H), 3.97 (d, J = 6.5 Hz, 2H), 3.91 (d, J = 5.2 Hz, 2H),
3.66 (s, 2H), 2.58 (t, J= 7.6 Hz, 2H), 2.01-1.98 (m, 2H), 1.64 (s, 3H), 1.63-1.58 (m, 2H),
1.37-1.28 (m, 2lH); l3C NMR (75 MHz, CDCh) 0167.6, 140.7, 139.7, 137.1, 134.9,
111
131.4, 131.1, 131.0, 130.7, 130.0, 124:4, 123.5, 122.2, 116.8, 70.8,68.1,66.4,42.5,35.3,
32.5,31.3; 29.5 (2C), 29.2 (2C), 26.7, 21.8 (2C), 16.8, 12.7; HRMS (ESI) calculated for
C30&603Na [M + Na]+, 477.3363, found 477.3353.
Pentafluorobenzyl 2-( (E)-4-( allyloxy)-2-methylb u t -2-enyl)-5-( (Z)-dodec-l O-en yi)
benzoate (155)
PhMe:MeOH (1:1) HO 6,24h
O~ O~
168
F
~F K2C03
Br :-.1 F DMF, 23"C, 10h
77% over two steps F
: 1 ! 69
, J. 11
O~ 155
Fo llow experimental procedure for 3';5-Bis( trifluoromethyl)benzyl 5 -( (2Z, 6Z, 1 OZ)-3,7-
dimethyldodeca-2,6,1 O-trienyloxy)-2-( (Ë)-4-( allyloxy)-2-methylbut-2-enyloxy)benzoate . .
(139) for the preparation of olefin 155~ 'Olefin 168 (0.10 g, 0.23 mmol) was treated with
K2C03 (0.06 g, 0.46 mmol) and bromide 69 (0.04 mL, 0.25 mmol, which prior to
addition was passed through a short plug of basic alumina) in DMF (22 mL) at room
temperature, stirred for 10 h, filte~ed,' evaporated in vacuo to give a residue that was
, J '1
purified by silica gel flash chromatograpny (10% ethyl acetate/hexanes) to afford olefin
112
155 as a pale-ye11ow solid (0.10 g, 77%). IH NMR (400 MHz, CDCh) cS 7.67 (s, IH),
7.30 (d, J = 8.0 Hz, 1H), 7.20 (d, J = 8.6 Hz, IH), 5.95 (ddt, J = 17.1, 10.9, 5.7 Hz, 1H),
5.52-5.47 (m, IH), 5.42 (s, 2H), 5.30-5.18 (m, 4H), 4.02 (d, J= 6.7 Hz, 2H), 3.98 (d, J=
5.7 Hz, 2H), 3.71 (s, 2H), 2.63 (t, J = 7.6 Hz, 2H), 2.11-2.04 (m, 2H), 1.67 (s, 3H), 1.63-
1.58 (m, 2H), 1.3.7:·1.28 (m,..I5H); De NMR (101 MHz, CDCh) cS 167.0, 141.1, 139.5,
138.1,134.9,133.1,132.4,131.5,130.8,130.5,129.0,124.5, 123.6, 122.4, 116.9,71.0,
66.5, 53.5, 44.6, 42.6, 35.3, 32.6, 31.3, 30.0, 29.4 (4C), 26.8, 22.2, 17.9, 16.8 (2C), 12.7; 1
HRMS (ESI) calculated for C34H41F503Na [M + Nat, 615.2868, found 615.2863.
3,5-Bis(trifluoromethyl)benzyl 2-«E)-4-(allyloxy)-2-methylbut-2-enyl)-5-«Z)-dodec-
10-enyl)benzoate (156)
o~
NaOH • PhMe:MeOH (1:1)
d, 24 h
., J ~ J ~ ! '~
138
156
168
K2C03
DMF, 23°C, 10h
77% over two steps
O~
Fo11ow experimental procedure for 3,5-Bis(trifluoromethyl)benzyl 5-((2Z,6Z,10Z)-3,7-
dimethyldodeca-2,6,1 O-trienyloxy }..,2-( (e)-4-( a11 yloxy)-2-meth ylbut -2-en yloxy)benzoate
113
(139) for the preparation of olefin 156. Olefin 168 (0.1 0 g, 0.23 mmol) was treated with
K2C03 (0.06 g, 0.46 mmol) and bromide 138 (0.05 mL, 0.25 mmol, which prior to
addition was passed through a short plug of basic alumina) in DMF (22 mL) at room
temperature, stirred for 10 h, filtered, evaporated in vacua to give a residue that was
purified by silica gel flash chromatography (10% ethyl acetate/hexanes) to afford olefin
156 as a pale-yellow oil (0.11 g,77%). l H NMR (300 MHz, CDCI3) cS 7.89 (s, 2H), 7.86
(s, 1H), 7.69 (d, J = 1.8 Hz, 1H), 7.29 (d, J = 1.9 Hz, lH), 7.17 (d, J = 7.9 Hz, lH), 5.88
(ddt, J = 17.0, 10.4, 5.7 Hz, 1H), 5.47-5.39 (m, 2H), 5.39 (s, 2H), 5.23 (dd, J = 17.4,3.3,
Hz, 1H), 5.15 (dd, J = 9.2, 3.3 Hz, 1H), 5.14-5.12 (m, 1H), 3.96-3.91 (m, 4H), 3.67 (s,
2H), 2.64-2.61 (m, 2H), 2.06-1.98 (m, 2H), 1.60 (s, 6H), 1.66-1.59 (m, 2H), 1.26 (s,
12H); 13C NMR (101 MHz, CDCh) cS 167.0, 141.1, 139.5, 138.7, 138.1, 134.9, 132.4,
131.6, 130.9, 130.4, 129.0, 124.5, 123.6, 122.4, 116.9, 71.0, 66.5, 64.8, 44.6, 42.6, 35.3,
32.6, 31.3, 30.0, 29.6, 29.5, 29.4, 29.4, 29.3, 26.8, 22.2, 17.9, 16.8, 12.7; HRMS (ESI)
calculated for C36H44F603Na [M + Nat, 661.3087, found 661.3094.
Cyclophane (157)
F~F '1 &F~ 0,
F 0
155 O~
81echert catalyst 170
Ti(Oi-Pr)4. DCM, 1'.. 4h
14%
157
Follow experimental procedure cyc10phane (58) for the preparation of cyc10phane 157.
The reaction was quenched with ethyl vinyl ether (5 mL) and the solvent was evaporated
to give a residue that was purified by silica gel flash chromatography (50%
114
toluene/hexanes) to afford cyc10phane 157 as a pale-yellow oil (0.07 g, 14%). IH NMR
(300 MHz, CDCh) Ô 7.93 (d, J = 1.6 Hz, lH), 6.98 (dd, J 7.8, 1.8 Hz, lH), 6.91 (d, J =
7.8 Hz, 1H), 4.95 (d, J = 1.6 Hz, 2H), 4.49 (d, J = 15.3 Hz, 1H), 4.36 (t, J = 6.8 Hz, lH),
3.05 (d, J = 15.5 Hz, lH), 2.44 (t, J = 6.2 Hz, 2H), 1.99-1.92 (m, 2H), 1.73 (s, 3H), 1.60-
1.15 (m, l4H); 13C NMR (75 MHz, CDCh) Ô 166.5, 141.0, 140.7, 136.7, 133.0 (2C),
131.6 (2C), 129.5, 124.9, 53.2,42.1, 35.2, 30.3, 28.9, 28.8, 28.5, 27.8, 26.9, 26.1, 25.8,
18.3; HRMS (ESI) calculated for C27H30Fj02 [M + Hr, 481.2160, found 481.2166.
Pen tafluorobenzyl 2-«E)-4-(allyloxy)-2-methylbut-2-enyl)-5-«2Z,6E,10Z)-3,7-
dimethyldodeca-2,6,10-trienyl)benzoate (174)
PhMe:MeOH 1:1, tl,10h HO
~Jr, F
69
K2COa DMF, 23°C, 24h
80%
O~
174
Follow experimental procedure for 3,5-Bis(trifluoromethyl)benzyl 5-«2Z,6Z, 1 0Z)-3, 7-
dimethyldodeca-2,6,10-tri enyloxy)-2-( (E)-4-( aIl yloxy)-2-methylbut-2-enyloxy)benzoate
115
(139) for the preparation of p4. Olefin 175 (0.10 g, 0.23 mmol) was treated with K2C03
(0.06 g, 0.46 mmol) and bromide 69 (0.05 mL, 0.25 mmol, which prior to addition was
passed through a short plug of b~~~c alumina) in DMF (22 mL) at room temperature,
stirred for 10 h, filtered, evaporated in(vJ},cuo to give a residue that was purified by silica
gel flash chromatography. (1.0% ethyl. ac.etate/hexanes) to afford olefin 174 as a pale-
yellow oil (0.11 g, 80ro). IH NMR (30.0 MHz, C6D6) 8 7.90 (d, J = 1.6 Hz, 1H), 7.10
(dd, J = 7.9,1.6 Hz, 1H), 7.04 (d,):~.7.9 Hz,'lH), 5.85 (ddt, J = 17.1, 10.5,5.7 Hz, 1H),
5.55-5.48 (m, 2H), 5.38 (t, J = 6.6 Hz, 1H), 5.31-5.23 (m, 3H), 5.06-5.03 (m, 3H), 3.90
(d, J = 6.6, 2H), 3,83-3.80 (m, 4H), 3.23 (d, J = 7.3 Hz, 2H), 2.21-2.15 (m, 2H), 2.15-
2.10 (m, 6H), 1.65 (s, 3H), 1.58 (s, 3H), 1.54 (s, 6H); I3C NMR (75 MHz, C6D6) 8 166.8,
140.3,139.1,138.9,137.0,135.8,135.2,132.6,132.1,130.9, 130.5, 129.9, 124.5, 124.0,
123.7, 123.6, 116.0, 71.0, 66.8, 53.4,_4~;9, 39.8, 33.7, 32.2, 26.8, 25.8, 23.5, 16.9, 15.9, , ."
15.8, 12.9; HRMS (EST) calculated for C36H42Fs03 [M + Ht, 617.3049, found 617.3069.
~, '- . ,
116
3,5-Bis(trifluoromethyl)benzyl '.' J,', 2-((E)-4-(allyloxy)-2-methylbut-2-enyl)-5-
((2:Z,6E,1 OZ)-3, 7-dimethyldodeca-2,6~1 O-trienyl)benzoate (176)
NaOH .. rO PhMe:MeOH 1:1, ~,10h HO
132
,/,
.. J.
j.
, ~
~' Br»CF
3
138
K2C03
DMF, 23°C, 24h
80%
O~
176
Follow experimental procedure for" 3;5-Bis(trifluoromethyl)benzyl 5-((22,62,1 0Z)-3, 7-
dimethyldodeca-2,6,1 O-trienyloxy)-2-( (E)-4-( aIl yloxy)-2-meth ylbut -2-enyloxy)benzoate
(139) for the preparation of 176. Olefin 175 (0.10 g, 0.23 mmol) was treated with K2C03
(0.06 g, 0.46 mmol) and bromide 138 (0.05 mL, 0.25 mmol, which prior to addition was
passed through a short plug of basic alumina) in DMF (22 mL) at room temperature,
stirred for 10 h, filtered, evaporated in vacua to give a residue that was purified by silica
gel flash chromatography (10% ethyl acetate/hexanes) to afford olefin 176 as a pale-
yeIlow oil (0.12 g, 80%). lH NMR (300 MHz, C6D6) Ù 7.88 (d, J = 1.5 Hz, lH), 7.63 (s,
IH), 7.46 (s, 2H), 7.11 (dd, J = 7.8,1.5 Hz, IH), 7.05 (d, J = 7.8 Hz, lH), 5.81 (ddt, J =
17.1, 10.6,5.3 Hz, IH), 5.54-5.45 (m, 2H), 5.38 (t, J = 7.2 Hz, lH), 5.30 (t, J = 6.8 Hz,
117
1H), 5.25-5.20.(m, 2H), 5.00 (ddd, J = 10.4, 3.3, 1.4 Hz, 1H), 4.81 (s, 2H), 3.87 (d, J =
6.6 Hz, 2H), 3.&0-3.78 (m, 4H), 3.2-5 (d,J = 7.3 Hz, 2H), 2.21-2.10 (m, 8H), 1.67 (s, 3H),
1.55 (s, 9H); 13C NMR (75 MHz, C6D6) cS 167.1, 140.4, 139.3, 139.0, 138.9, 137.0,
135.8,135.2,132.6,132.1, 132.1, 131.~, ,130.7, 130.5, 130.1, 124.5, 124.0, 123.6, 123.5,
121.9, 116.0, 71.0, 66.8, 64.8, 42.9, 39.8, 33.8, 32.2, 26.8, 25.8, 23.5, 16.9, 16.0, 12.9;
HRMS (ESI) calculated for C38RtsF603 [M + Ht, 663.3267, found 663.3295.
Cyclophane (173)
o~
174
Blechert Catalyst 170
Ti(Oi-Pr)4' DCM, t., 4h 37%
F-gFI
F, ~ F ~ 1
OE 0
173
Follow experimental procedure cyclophane (58) for the preparation of cyclophane 173. , ..
The reaction was quenched with ethyl vinyl ether (5 mL) and the solvent was evaporated
down to about 1 mL to give a residue that was further purified by silica gel flash \ !~ ,.
chromatography (50% ~oluene/hexanes) to afford cyclophane 173 as a pale-yellow oil
(18.7 mg, 37%). IH-NMR was carried out in C6D6 since running the sample in CD Ch , " •• 11.
caused decomposition. In addition, running the sample in C6D6 prevents overlapping of
the three alkenyl proton signaIs. IH NMR (400 MHz, C6C6) cS 7.98 (d, J = 1.6 Hz, 1H),
7.04 (dd, J = 7.9, 1.9 Hz, 1H), 6.89 (d, J = 7.7 Hz, 1H), 5.47 (t, J = 7.0 Hz, 1H), 4.94 (d,
J = 5.3 Hz, 2H), 4.50 (t, J = 5.8 Hz, l.H), 4.47-4.42 (m, 2H), 3.14 (d, J = 4.9 Hz, 1H), "\ "
3.03 (d, J = 15.8 Hz, 1H), 2.03-1:97 (m, 2H), 1.87 (t, J = 5.6 z, 2H), 1.80-1.79 (m, 4H),
118
1.73 (s, 3H), 1.58 (s, 3H), 1.29 (s,3H); lic NMR (101 MHz, C6D6) Ô 166.5, 141.2, 140.6,
140.4, 136.4, 133.2, 133.0, 131.3, 130.8,124.0, 121.6,42.1,38.8,33.4,31.9,30.8,29.3,
25.6,23.7,22.5, 18.7, 15.0, 14.3, 11.2CHRMS (ESI) calculated for C29H30Fs02 [M + Ht,
505.2160, found 505.2167.
", '
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2 1
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0.14 .. peu
5 Il''' ONP IH %009
32769 CIlCl3 12000
4 22727.213 Hz 0.693581 Hz
0.7209460 sec 22800
22.000 usee 31.43 usee 298.0 K
0.0000200 sec 14.00 dB
2.00000000 sec waltU6
65.0D usee 0.0300000 sile
12.00 dB ;1.00 usee
100. 6244502 HH~ 13e
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Data Parameters IZ-3-151
1
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111. 000 usee 158.57 usee 29B.0 K
1.00000000 sec B.OO usee
400. 1364000 MHz lH
F2 - Processlng oarallleters SI 32766 SF 400.1344169 MHz 1'101'1 S5B lB 66 PC
10 NHR plot ex cv 'F1P FI F2P F2 PPr·leM HleM
no o
0,00 Hz o
1.00
parallleters 26.00 CIII
0.00 [III
10.000 PPITI 4001.34 Hz -0,000 ppm
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153.89786 Hz/cm
......
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