analytical study designs (dr.sison).pdf
TRANSCRIPT
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STUDYDESIGNS:CrosssectionalCasecontrol
Beforeafter,ValidationProf.JudithM.Sison,MD,MPH,FPOGS
2008 J.M.Sison, MD, MPH, FPOGS
EPIDEMIOLOGICSTUDY
A.Observational Crosssectional
Samplingw/regardtoDisease/Effect
ExposureofcharacteristicsATtimeofstudy
Casecontol Samplingw/regardtoDisease/
Effect Retrospectivehistoryofexposure
ofcharacteristicsPRIORtotimeofstudy
Cohort Samplingw/regardtoExposureor
Cause Prospective/Historical
B.Experimental NOTrandomized
Communitytrials Randomized
Clinicaltrials
OBSERVATIONALSTUDIES Crosssectional(Survey,Prevalence)
DiseasedescriptionDiagnosis&stagingDiseaseprocesses&mechanisms
CasecontrolCausesofdiseases Identificationofriskfactors
CohortProspective(Incidence)Causesofdiseases IdentificationofriskfactorsNaturalhistory,Prognosis
CohortRetrospectiveHistorical
CROSSSECTIONALSTUDY
CHARACTERISTICS:
Singledefinedpopulation PIOwelldefined Concurrentcontrol(fromsamepopulation)
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CROSSSECTIONALSTUDY
Bothdescriptive&analytical Donefordiseasesofslowonset&longduration
Generatehypothesis&preliminarytestingIdentifypotentialcause/sofanoutcome
CROSSSECTIONALSTUDY
EvidenceforcausalityisonlysuggestiveNocriteriainselectionofsubjectsconfoundersNocontroloverexposureNoblindingNostandardizedoutcomeassessmentNosimilar/comparableE&Egrps
Servesasaninitialstageofacohortstudy
CROSSSECTIONALSTUDY
USES: Determine&verifyanevent(Exploratorystudy)Establishbaselinedatatoquantifyhealthstatusofthecommunity
EvaluatehealthservicedeliveryDeterminemagnitudeofadisease
CROSSSECTIONALSTUDY
AdvantagesGeneralizabilityLesscostly:nofollowupLesstimeinvolved
DisadvantagesNotappropriate
Rare Shortdurationdiseases Diseasesw/periodsofexacerbations&remissions
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CROSSSECTIONALSTUDY
DESIGN:EO
EO
NNe
EO
EOFromthetargetpopulation,subjectsareselectedthen,exposureand
outcomearemeasuredatthesametime
CROSSSECTIONALSTUDY
TABLE:with outcome
w/o outcome
Exposed a b
Not exposed
c d
CROSSSECTIONALSTUDY
STATISTICS:OddsofbeingexposedaOOdds(E)=OROdds(E)=bO
OddsofbeingunexposedcOOdds(E)=OROdds(E)=dO
O O E 14 14 28 E 10 12 22
50
odds(E)OddsRatio=odds(E)e.g.Odds(E)=14/14=1Odds(E)=10/12=.833OR=1/.833=1.2
OddsofhavingOinEis1.2higherthantheE
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CROSSSECTIONALSTUDY
TodetermineiftheresanassociationbetE&O,wehave2choices:
CalculateprevalenceofOinEsubjects
andcompareittoprevalenceofOinE
CalculateprevalenceofEinsubjectsw/O
andcompareittoprevalenceofEinsubjO
PREVALENCE
Measureoffrequency Prevrate=
Interviewquestions Typeofmeasure
Doyoucurrentlyhaveasthma? Pointprevalence
Haveyouhadasthmaduringthelast(n)years? Periodprevalence
Haveyoueverhadasthma? Cumulativeincidence
INCIDENCE
MeasuresthenumberofNEWcasesduringaspecificperiod
Incidencerate=
BIASESinPREVALENCESTUDIES:TEMPORALCONSEQUENCES
Possible causes
Population free of disease but exposed/not exposed to possible causes
Development of cases overtime
Population of existing cases & noncases
Incidence Study Disease or Outcome
Prevalence Study
Past or present exposure to possible causes
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USESofPREVALENCERATE
Decidingtheneedforhealthcare Planningofhealthservices Investigatingpotentiallycausalrelationshipb/wriskfactors&adiseaseorprognosticfactors&anoutcome
Assigningaprobabilitythatapatienthasthecondition
PREVALENCEvsINCIDENCE
LOWPREVALENCEDISEASES:ShortlivedRapidlycuredFatalatanearlystage
HIGHPREVALENCEDISEASES:LowmortalityLowcurerateHighdisablingeffect
PREVALENCEvsINCIDENCE
HIGHINCIDENCEDISEASES:Common
LOWINCIDENCEDISEASESRare
CHARACTERISTICSofPREVALENCE&INCIDENCE
Characteristics Prevalence Incidence
Numerator All cases counted on a single survey or exam of a grp
New cases during a pd of time among a grp initially free of disease
Denominator All people examined, including cases & noncases
All susceptible people present at the beginning of the pd
Time Single pt Duration of the pd
How measured Prevalence (cross-sectional) study
Cohort
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CASECONTROLSTUDY
ExplorestherelationshipbetpriorEtoaspecificriskfactor&thelikelihoodofdevelopingaparticulardisease.
Retrospectivestudythatcomparesagrpofcases&1grpofcontrolsw/respecttoacurrentorpreviousexposure
CASECONTROLSTUDY
CHARACTERISTICS: observationalwelldefinedpopulation,specific
outcomeandfactor/s Comparativethecasesandthecontrols Retrospectivelookbacktofindwhatmaycause
theeffect Analyticrelationshipofoutcometoprobable
cause/s
CASECONTROLSTUDY
Populationbasedsampling Incidentcases
LessexpensiveMaybecompletedmorerapidly
CASECONTROLSTUDY
Cases:hospitalrecords,surveillancesystems,deathcertificates
Controls:sampledfrompopulationthatgaverisetothecasesHospitalbased
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SELECTIONCRITERIAforHOSPITALBASEDCONTROLS
TODO:
VariousdiagnosticgroupsnospecificRFisoverrepresented
Patientsw/acuteconditionsearlierEcouldnothadbeeninfluencedbythecondition
TOAVOID:
Patientswhohavemultipleconcurrentconditions
Patientsw/dxknowntoberelatedtotheRiskFactorofinterest
CASECONTROLSTUDY
USES/APPLICATIONS:
Exploringforprobablecauses Determiningharmfulagentsthatcouldhavecausedapresentcondition
Appropriatefordiseases:RareChronicorwithlonglatency
CASECONTROLSTUDY
WeaknessRecallbiasSelectionbiasValidityissue
MatchingconfoundingormixingtheeffectsofEtotheriskfactor
statisticalprecisionofestimatesallowingsmallersamplesize
Timeconsuming
CASECONTROLSTUDY
DESIGN:EOOEONEOOEOFromthesamepopulation,cases&controlareselectedthen,look
backintimetofindprobablefactor/sthatcouldhaveaneffecttotheoutcome
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CASECONTROLSTUDY
Exposed Unexposed
Case a b
Control c d
CaseExposureProblty=Exposedcases(a)Allcases(a+b)OddsofCaseExposure=Exposedcases(a)Allcases(a+b)
Unexposedcases(b)Allcases(a+b)=a/bOddsofControlExposure
=c/d
TABLE:
CASECONTROLSTUDY
STATISTICS:OddsofhavingtheEinCases&ControlacOdds(O)=Odds(O)=bd
odds(O)a/baxdOddsRatio==odds(O)c/dbxcOR:associationbetweenE&Ounlikelytohaveoccurredbychancealone
NESTEDCASECONTROLSTUDY
Population
DevdiseaseDoNOTdevdisease
CasesControl
NESTEDCASECONTROLSTUDY
Advantages: Dataobtainedbeforeanydiseasehasdevelopedrecallbias
Riskfactorsarerepresentedthanearlysubclinicaldisease
Moreeconomicaltoconductthancohortstudy
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BEFOREAFTERSTUDY
Transitiondesign Retrospectivemeasureoutcomethenassessexposure
Prospectiveapplyexposurethenmeasureoutcomefollowingexposure
Comparative2groupsonly
BEFOREAFTERSTUDY
MeasurementofoutcomescanNOTbeconcurrent Same/differentstudypopulation
Differentstudypopulation:WhenNe1isdonesimultaneouslyw/Ne2convertedtoaCOHORT
BEFOREAFTERSTUDY
CHARACTERISTICS: Studysubjectsideallymustbethesamebeforeand
after(issues:comparable,selectionbiasanddropouts)but,maybedifferent
Interventionideallybeundercontrolofinvestigator(standardized)butisnot,speciallyinHARMstudies
Outcomeisassumednotpresentatthestartofstudy(before)anddevelopedafterduetoexposure
BEFOREAFTERSTUDY
USES/APPLICATIONS: HARMstudiesEhappensatthestart&beyondthecontrolofinvestigator
Evaluatingeffect/sofnewpoliciesandstrategies(Mgt,BZ,marketing&sales)
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BEFOREAFTERstudy
DESIGN: SamepopulationOO
NNeEE
OO
beforeafter Twodifferentsubjectpopulations,identifyN1&
Ne1forbeforeandN2,Ne2forafter
BEFOREAFTERstudy
TABLE:
OUTCOME
presentabsent
Exposed a b
Not
Exposedc d
BEFOREAFTERSTUDY
STATISTICS: RiskofdevelopingoutcomeduetoexposureacRisk(E)=Risk(E)=a+bc+d
RiskRatio:R(E)RR=R(E)RR=riskofdevelopingOinEis>/
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ELEMENTSOFAVALIDATIONDIAGNOSTICTESTSTUDY
Diagnostictest Reference(gold)standard Reproducibility Blindandindependentcomparison Studysubjectssuspectstohavedisease Dataonaccuracyofthetest
LEVELSofEVIDENCEforRATINGACCURACYofDIAGNOSTICTESTS
Level1 Indptinterpretationofdxtestresult Indptinterpretationofgold/referncestdresultSubjectsarepatientssuspectedtohavediseaseReproducibilityofbothdx&stdtestsSamplesize:atleast50patientsw/disease&50patientsw/outdisease
Level24/5criteriaaremetLevel33/5Level42/5Level51/5Level6NONE
VALIDATIONREFERENCE(GOLD)STANDARD
TRUTH Globallyacceptablecriteriathatadiseaseis
presentorabsent(100%certainty) Couldbeanyoffollowing: Histopathology Anydiagnostictestresult Consensusofexperts
ValidationDiagnostictestunderstudy
Examination(radiography,laboratory,etc.)usetodeterminethepresenceofadisease
Onediagnosticoptionwhendoinggoldstandardisnotpossible
Performanceislowerthangoldstandard(
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VALIDATIONSTUDYSUBJECTS
Atthestartofstudy:NoonehasthediseaseAllaresuspects(withsignsandsymptoms)tohavethedisease
Ideally,allundergogoldstandardanddiagnostictests
ValidationReproducibility(method&results)
Boththegoldstandardanddiagnostictestsaredescribedindetailtoallowthosenotpartofthestudyduplicatetheprocedure
Generating,readingandinterpretingresultscanberepeatedanywhere
VALIDATIONINDEPENDENCE&BLINDING
Thedoerandreaderofthediagnostictestisnotinfluencedbyanddoesnotknowthereferencestandardresultandviceversa
Referencestandardanddiagnostictestsaredoneseparatelyandpreferablyconcurrently
VALIDATIONCOEFFICIENTOFAGREEMENT(VARIABILITY)
Intraobservervariabilityinreadings/interpretationdonebyonepersonatdifferenttimes
Interobservervariabilityinreadings/interpretationofanumberofpersons
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KAPPASTATISTIC Expressestheextenttow/ctheobservedagreementexceedsthatw/cwouldbeexpectedbychancealone(numerator)relativetothemostthattheobserverscouldhopetoimprovetheiragreement(denominator)
Kappa=observedagreement(OA)potentialagreement(PA)OA=observedchanceagreementPA=100%chanceagreement
Percentagreement=41+27/75x100=90.7%The2pathologists
agreedon90.7%ofthereadings
Grading Pathologist A Gr II Gr
III Grding Pth B
Gr II 41 3 44
GrIII 4 27 31
45 30 75
%chanceagreement=26.4+12.4x10075=51.7%
The2pathologistsexpectedtoagreebychanceon51.7%ofthereadings
Grading Pathologist A
Gr2 Gr3 Totals by B
Grding Pth B
Gr II
26.4 17.6 44 58.7%
GrIII
18.6 12.4 31 41.3%
Totals by A
45 30 75
60% 40%
Kappa=observedagreement(OA)potentialagreement(PA)
OA=observedchanceagreement
PA=100%chanceagreementKappa=90.7%51.7%=39%=0.81100%51.7%48.3%
Thereisasubstantialagreementbetweenthe2pathologists
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STRATIFIEDQUALITATIVEEQUIVALENTofKAPPANUMERICALVALUES
00.2Slight 0.20.4Fair 0.40.6Moderate 0.60.8Substantial 0.81Almostperfect
ValidationBasicTable
positive negative
positive True (+) a
False (+) b
negative False (-) c
True (-) d
REFERENCE (GOLD)STANDARD
DIAGNOSTIC TEST
ValidationBasicStatistics
Sensitivityasn=a+c
Specificitydsp=b+d
Accuracy a + d a + b + c + d
SENSITIVITY(Sn)
SnThegreatertheSn,themorelikelythetestwilldetectpersonsw/disease
UsefulclinicallytoR/Othepresenceofadisease(SnOUT)
Iftestishighlysensitive,anegativeresultwouldexcludethepossibilitythatthepatienthasthedisease
Percentageoffalse()errorislow
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SPECIFICITY(Sp)
SpThegreatertheSp,themorelikelythetestwilldetectpersonsw/odisease
UsefulclinicallytoR/Ithepresenceofadisease(SpIN)
Iftestishighlyspecific,apositiveresultwouldincludeorstronglysuggestthatthepatienthasthedisease
Percentageoffalse(+)errorislow
RELATIONSHIPBET.PREVALENCE&PREDICTIVEVALUE
Thehighertheprevalence,thehigherthePV Screeningprogramismostefficientifdirectedtoahighrisktargetpopulation
VALIDATIONDATAFORCLINICALAPPLICATION
Predictivevaluesad
Ppv=Npv=
a+bc+d
LikelihoodRatiosForpositiveresultfornegativeresultac
a+ca+c
LR(+)==Sn/1SpLR()==1Sn/Sp
bd
b+db+d
RELATIONSHIPBET.SPECIFICITY&PREDICTIVEVALUE
Anincreaseinspecificityresultsinamuchgreaterincreaseinpredictivevaluethandidthesameincreaseinsensitivity
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LIKELIHOODRATIO
ThebiggertheLR+,thestrongertheassociationbetweenhavinga+testresult&havingthedisease
ThesmallertheLR,thestrongertheassociationbetweenhavingatestresult&NOThavingthedisease
DoNOTvaryaccordingtoprevalenceofdisease
RECEIVEROPERATINGCHARACTERISTIC(ROC)CURVE
Ateverypt.alongthisdashedline,theLR+is1&a+testresultisequallylikelyforpersonsw/&w/odisease
AclinicallyusefuldxtesthasanROCcurvethatisfarfromthisdashedline
Towardthelefthandportion,thereissteepriseinSnw/onlymodestreductioninSp
Towardtherighthandportion,theslopeofROCisflatlittleimprovementinSnforasubstantialincreaseinSp
RECEIVEROPERATINGCHARACTERISTIC(ROC)CURVE
SummaryindexofoveralltestperformancecalculatedastheareaundertheROCcurve
HighestpossiblevaluefortheareaundertheROCcurveis1almostperfecttest
Thegreaterthearea,thebetterthetestperformance
RECEIVEROPERATINGCHARACTERISTIC(ROC)CURVE
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Formultilevelorcontinuousoutcometestresults,thechoiceofacutoffpointvaluethreshold+willSp(fewerfalse+)butalossofSn(>falseresultsormissedcases)
threshold+willSn(fewerfalse)butalossofSp(>false+results)
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