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Analysis of biomolecules by SEC and Ion-Exchange UPLC Anders Feldthus Waters Nordic ©2011 Waters Corporation 1 Anders Feldthus, Waters Nordic

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Page 1: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Analysis of biomolecules bySEC and Ion-Exchange UPLC

Anders Feldthus Waters Nordic

©2011 Waters Corporation 1

Anders Feldthus, Waters Nordic

Page 2: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Waters Commitment

To develop, commercialize and market columns that when used on Waters ACQUITY UPLC® systems, give the speed, sensitivity, resolution and method reproducibility that has not been previously resolution, and method reproducibility that has not been previously achieved for the characterization of biological macromolecules with traditional HPLC.

©2011 Waters Corporation 2

Page 3: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Agendag

Ion-Exchange Chromatography— Theory and practice Theory and practice — Protein-Pak Hi Res IEX Columns — Method Development Strategies

o Auto•Blend Plus Technology and ACQUITY UPLC H-Class Bio SystemSystem

Size-Exclusion Chromatography— Theory and practice— ACQUITY UPLC for SEC

o ACQUITY BEH200 SEC, 1.7 µm Columns — Factors Influencing Component Resolution— Ways to Maximize SEC Column LifeWays to Maximize SEC Column Life

©2011 Waters Corporation 3

Page 4: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Ion-Exchange Chromatographyg g p y

Na +

Cl -Na +Cl -

Anion-Exchange

Na +

Na +Cl -

Cl

Na +

Cl -Na +Cl

Cl -

Anion-Exchangeg

Particle

Cl -Na +

Cl -

Na +

Na +Cl -Cl -

Cl -

gParticle

Elute with Step or Continuous

Na +Na +

Cl -

Binds at Low Ionic StrengthElute with Step or Continuous

Gradients of Increasing Ionic StrengthSeparations are based on net surface charge on protein with oppositely charged groups on ion-exchanger

©2011 Waters Corporation 4

Proteins elute from column using either a gradient of increasing salt concentration (most common) or changing pH (less common)

Page 5: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Ion-Exchange Gradient: Starting pointg p

Sample High Equilibration Injection Gradient Salt Re-Equilibration

~ 5 cv

Volume Wash

unbound proteinsproteins

10-20 cv

5-10 cv 5-10 cv

©2011 Waters Corporation 5

Typical linear gradient for ion-exchange chromatography

Page 6: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Ion-Exchangeg

Advantages Limitations

S ti b h d Moderate resolution

Concentrating technique

Separation by charge and charge distribution; insensitive to other properties

— Can load large volumes of a dilute sample For salt gradients, time-

consuming pH optimization required for best resolution

Non-denaturing protein elution techniques

required for best resolution.

Fractions may need to be desalted prior to the next

Preferred first step when a cost-effective affinity purification is not available

desalted prior to the next purification or characterization step (e.g., Mass Spectrometry)

©2011 Waters Corporation 6

Page 7: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Protein Isoelectric Points and IEX

ParticleSupport

ParticleSupport

©2011 Waters Corporation 7

Page 8: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Strong versus Weak Ion Exchangersg g

Strong and weak DO NOT indicate how tightly the protein is bound

A t h i l i i d hil k h ’ A strong exchanger is always ionized while a weak exchanger’s ionization varies with pH

— Weak Cation Exchange column- pka 3.5-4.5

— Weak Anion Exchange column – pka ~9

Strong exchangers are recommended where there is a need to run at H ( id i )extreme pH (wider operating range)

The ion exchange capacity of a weak ion exchanger varies with pH

— Sample loading (binding) capacity can vary with pH due to loss of charge from the exchanger

©2011 Waters Corporation 8

Selectivity differences exist between weak and strong exchangers— Binding constants are a function of the IEX functional group

Page 9: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Agendag

Ion-Exchange Chromatography— Theory and practice y p

— Protein-Pak Hi Res IEX Columns

— Method Development Strategies

o Auto•Blend Plus Technology and ACQUITY UPLC H-Class Bio gy QSystem

Size-Exclusion Chromatography— Theory and practice

— ACQUITY UPLC for SEC

o ACQUITY BEH200 SEC, 1.7 µm Columns — Factors Influencing Component Resolution

©2011 Waters Corporation 9

Page 10: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Protein-Pak Hi Res IEX

©2011 Waters Corporation 10

Page 11: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Attributes of Protein-Pak™ Hi Res IEX Columns

Multi-layered network of ion-exchange groups (SP, CM or Q)

Effective diffusion and binding o Effective diffusion and binding

o High sample loading and resolution

o Minimal non-desired interactions

No MW limitations: non-porous material

QC tested with protein samples for batch-to-batch reproducibility

High chemical stability: hydrophilic, polymer-based IEX particles

— Wide pH range (3- 10)

— high salt concentrations (1M)

St d d ( t 1450 i f CEX d 2175 i f AEX) — Standard pressures (up to 1450 psi for CEX and 2175 psi for AEX)

— Can be cleaned with aggressive washing

eCord enabled for data tracking

©2011 Waters Corporation 11

Page 12: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Batch to Batch Reproducibility:Protein-Pak Hi Res Q Column

0.035

Q

Std Dev %RSD1 - Myoglobin 0.06 1.282 T f i 0 03 0 53

Retention Time

0.025

0.0301

2 3

2 - apo-Transferrrin 0.03 0.533 - Trypsin Inhibitor 0.03 0.27

AU

0.015

0.020 Batch A

0 005

0.010

Batch C

Batch B

0.000

0.005

Minutes2.00 4.00 6.00 8.00 10.00 12.00 14.00 16.00 18.00

Batch C

©2011 Waters Corporation 12

Minutes

Reproducible retention time observed for multiple batches

Page 13: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Carryover

0.16

y

1st Repeat Gradient

2nd Repeat Gradient

0.12

0.14

Gradient Gradient

AU

0 06

0.08

0.10

0.02

0.04

0.06

Expected Elution Points

0.00

Minutes0.00 10.00 20.00 30.00 40.00 50.00 60.00 70.00 80.00 90.00 100.00 110.00 120.00 130.00 140.00 150.00 160.00

©2011 Waters Corporation 13

No detectable carryover of lysozyme (100 µg injection)

Page 14: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Ion-Exchange Analysis of Antibodies on Weak Cation Exchange Column

AU0.020

0.030

0.040

gA

0.000

0.010

0.020

Humanized IgG1

AU0.010

0 0 0

Humanized IgG2

0.000

U

0.010

0.015

AU

0.000

0.005

Minutes

0.00 2.00 4.00 6.00 8.00 10.00 12.00 14.00 16.00 18.00 20.00 22.00 24.00

Chimeric IgG1

©2011 Waters Corporation 14

Minutes

Column: Protein-Pak Hi Res CM, 4.6 x 100mm

Page 15: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Confirmation of c-terminal Lysine Variants of mAb

0 00 Untreated mAb

AU 0.002

0.003

0.004 Untreated mAb

KKK

0.000

0.001

0.008

AU

0.002

0.004

0.006 mAB treated with carboxypeptidase B, 30 °C, 20 minutes

0.000

Minutes24.00 26.00 28.00 30.00 32.00 34.00 36.00 38.00 40.00 42.00 44.00 46.00 48.00 50.00 52.00 54.00 56.00 58.00

©2011 Waters Corporation 15

IEX can be used to confirm the presence of mAb lysine variantsColumn: Protein-Pak Hi Res CM, 4.6 x 100mm

Page 16: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Agendag

Ion-Exchange Chromatography— Theory and practice y p

— Protein-Pak Hi Res IEX Columns

— Method Development Strategies

o Auto•Blend Plus Technology and ACQUITY UPLC H-Class Bio gy QSystem

Size-Exclusion Chromatography— Theory and practice

— ACQUITY UPLC for SEC

o ACQUITY BEH200 SEC, 1.7 µm Columns — Factors Influencing Component Resolution— Ways to Maximize SEC Column Life

©2011 Waters Corporation 16

Page 17: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Strategies to Developing an Ion-Exchange Protein Separationg p

Retention is optimized by adjustment of ionic strength

Selectivity is most conveniently optimized with pH

Changing buffer and counter ion may improve selectivity

Methods may require adjustment if the temperature is changedMethods may require adjustment if the temperature is changed

©2011 Waters Corporation 17

Page 18: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Affect of Salt Gradient Slope % 24.00

36.00

48.00

p

0-0.15M NaCl

Elutes in high salt wash step1

3

25 Ovalbumin 1

Myoglobin 2

28 00

0.00

12.00

Minutes3.10 6.20 9.30 12.40 15.50 18.60 21.70 24.80

1

3

2

4 Ribonuclease A 3

Cytochrome C 4

Lysozyme 5

%

7.00

14.00

21.00

28.00

0-0.3M NaCl

3

4 5

0.00

Minutes3.10 6.20 9.30 12.40 15.50 18.60 21.70 24.80

36.00

48.00

Unbound proteins

1 24 5

%

0.00

12.00

24.00

Minutes0.00 3.10 6.20 9.30 12.40 15.50 18.60 21.70 24.80

0- 0.5M NaCl3

©2011 Waters Corporation 18

Minutes

Higher salt gradients result in earlier elution of bound proteinsHigh salt wash may be needed in shallower gradients to elute tightly bound proteinsColumn: Protein-Pak Hi Res CM 4.6 mm x 100mm

Page 19: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Affect of Salt Gradient Slope:Ovalbumin Variants

8 10 cv gradient

AU 0.02 1 2

3 4

56

79

10

0.00

AU 0.02

5 cv gradient

3 45

6

7

0.00

1 25 7

3 4

6

AU

0.00

0.02

Min tes4.00 6.00 8.00 10.00 12.00 14.00 16.00 18.00 20.00 22.00

3 cv gradient1 2

3 45 7

©2011 Waters Corporation 19

Minutes

Longer gradient: increased resolution, lower sensitivity

Column: Protein-Pak HI Res Q, 4.6 x 100 mm

Page 20: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Strategies to Developing an Ion-Exchange Protein Separationg p

Retention is optimized by adjustment of ionic strengthRetention is optimized by adjustment of ionic strength

Selectivity is most conveniently optimized with pH

Changing buffer and counter ion may improve selectivity

Methods may require adjustment if the temperature is changed

©2011 Waters Corporation 20

Page 21: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Effect of pH on Selectivity

0.040

0.050

p y

pH 6.6 α-Chymotrypsinogen 1

Ribonuclease A 2

1 3

AU

0.020

0.030cytochrome c 3

2

0.000

0.010

0.050

1 3

AU

0.020

0.030

0.040

pH 5.0

2

0.000

0.010

Minutes4.00 6.00 8.00 10.00 12.00 14.00 16.00 18.00 20.00 22.00 24.00 26.00 28.00 30.00 32.00 34.00 36.00

©2011 Waters Corporation 21

Column: Protein-Pak Hi Res CM 4.6 x 100 mm column

Page 22: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Strategies to Developing an Ion-Exchange Protein Separationg p

Retention is optimized by adjustment of ionic strength

Selectivity is most conveniently optimized with pH

Changing buffer and counter ion may improve selectivity

Methods may require adjustment if the temperature is changedMethods may require adjustment if the temperature is changed

©2011 Waters Corporation 22

Page 23: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Effect of Buffer on Selectivity

0.025

y

20mM Sodium Phosphate α-Chymotrypsinogen 1

Ribonuclease A 21 2

3

AU

0.010

0.015

0.020 cytochrome c 32

0.000

0.005

20 M MES1

3

AU

0 010

0.015

0.020

0.025 20mM MESMorpholino ethanesulfonic acid

12

0.000

0.005

0.010

Minutes5.00 10.00 15.00 20.00 25.00 30.00 35.00 40.00 45.00

©2011 Waters Corporation 23

Buffer can alter selectivity and retention of proteins at same pH (6)

Column: Protein-Pak Hi Res CM 4.6 x 100 mm column

Page 24: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Counter Ion Effects

NaClRibonuclease A 1

cytochrome c 21

2

AU 0.010

0.020Aprotinin 3

13

0.000

0.020KCl

AU

0.000

0.010

Minutes14.00 16.00 18.00 20.00 22.00 24.00 26.00 28.00 30.00 32.00

C t i h l ti it d t ti f t i

©2011 Waters Corporation 24

Counter ion may change selectivity and retention of proteins

Effects tend to be minimal

Page 25: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Strategies to Developing an Ion-Exchange Protein Separationg p

Retention is optimized by adjustment of ionic strength

Selectivity is most conveniently optimized with pH

Changing buffer and counter ion may improve selectivity

Methods may require adjustment if the temperature is changedMethods may require adjustment if the temperature is changed

©2011 Waters Corporation 25

Page 26: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Temperature Effectsp

45 °C

AU 0.005

40 °C

0.000

AU 0.005

35 °C

0.000

AU 0.005

30 °C

A

0.000

U 0 005 KKK

AU

0.000

0.005

Minutes2.00 4.00 6.00 8.00 10.00 12.00 14.00 16.00 18.00 20.00 22.00

KKK

©2011 Waters Corporation 26

Temperature may effect selectivity and retentionChanges may be similar to those observed with pH changeColumn: ProteinP-ak Hi Res CM 4.6 x 100 mm column

Page 27: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Waters Auto•Blend Plus™ Technologygy

12.5% 100mM NaH 2PO 4

12.5% 100mM Na 2HPO 4

25mM Sodium Phosphate, 150mM NaCl pH 6.8

15% 1000 mM NaCl

60% H20NaCl

©2011 Waters Corporation 27

Page 28: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Auto•Blend Plus™ Technology

Enter Buffer

Enter Buffer System

Concentration

Enter pH andSalt Gradient

©2011 Waters Corporation 28

Salt Gradient

Page 29: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Effect of pH on Selectivity pH 6

0.020

1 2

p y

pH 6 0

Ribonuclease A 1

cytochrome c 2

3

AU

0.000

0.010

1 3

20.020

pH 6.0Aprotinin 3

2

1 32

AU

0.000

0.010 pH 6.2

2

1 3

AU

0.000

0.010

0.020

pH 6.4

1 3

2

AU

0.000

0.010

0.020

pH 7.2

©2011 Waters Corporation 29

Minutes10.00 15.00 20.00 25.00 30.00 35.00

pH can be used to alter selectivity of proteinsColumn: Protein-Pak Hi Res CM 4.6 x 100 mm column

Page 30: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

AutoBlend Plus Buffer Management forProtein Ion Exchange Method Developmentg p

Fluid Path of ACQUITY UPLC H-Class Bio System configured for multi-buffer use

— The optional solvent select valve provides 6 selectable choices that are associated with particular method names.

— The proportions of the four selected reservoirs are calculated with Auto•Blend Plus™ Technology to meet the requirements of the method using the defined buffer system specified with the method

©2011 Waters Corporation 30

meet the requirements of the method, using the defined buffer system specified with the method.

— The four physical reservoirs, labeled A, B, C, and D1-D6 can be assigned as needed as the Acid, Base, Salt , and Aqueous components.

Page 31: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Enhanced Method Development viaAutoBlend Plus and Automated Column ManagementManagement

d l f h

©2011 Waters Corporation 31

Automated Column Management for Protein Ion Exchange.

The method specifies the column to be used and the bypass (B) permits matching the buffer to the column.

Page 32: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Use of AutoBlend Plus and Automated Column Switching for mAb Separation Method Scouting

0.055

0.060

i k i

AU

0.020

0.025

0.030

0.035

0.040

0.045

0.050 Protein-Pak™ HiRes Q

0.000

0.005

0.010

0.015

0.050

0.055

0.060

AU

0.015

0.020

0.025

0.030

0.035

0.040

0.045

Protein-Pak™ HiRes SP

0.000

0.005

0.010

Minutes0.00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00 11.00 12.00 13.00 14.00 15.00 16.00 17.00 18.00 19.00 20.00 21.00 22.00 23.00 24.00 25.00 26.00 27.00 28.00

©2011 Waters Corporation 32

Page 33: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

IEX Summaryy

Total system solution with combination of ACQUITY UPLC H Class Bio System and column

— Auto•Blend Plus™ Technology allows for change of pH and ionic strengths without preparation of different buffers

— Simplifies methods developmentp p

Protein-Pak Hi Res IEX column benefits

— Consistent batch-to-batch performance (tested with protein — Consistent batch-to-batch performance (tested with protein standards)

— Minimal column related carryover

Stable over a wide pH range— Stable over a wide pH range

©2011 Waters Corporation 33

Page 34: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Agendag

Ion-Exchange Chromatography— Theory and practice y p

— Protein-Pak Hi Res IEX Columns

— Method Development Strategies

o Auto•Blend Plus Technology and ACQUITY UPLC H-Class Bio gy QSystem

Size-Exclusion Chromatography— Theory and practice

— ACQUITY UPLC for SEC

o ACQUITY BEH200 SEC, 1.7 µm Columns — Factors Influencing Component Resolution— Ways to Maximize SEC Column Life

©2011 Waters Corporation 34

Page 35: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Principles of Size ExclusionChromatography of Proteins

Separates proteins by their size in solution (Stokes radius)

Separations are Isocratic

Tends to be used as a “Polishing” isolation step or as an analytical technique to determine presence of protein aggregates

Generally a “lower resolving” technique compared to other methods such as ion-exchange or reversed-phase methods

©2011 Waters Corporation 35

Page 36: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Size Exclusion Separation of Proteinsp

©2011 Waters Corporation 36

Page 37: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Common Customer Concerns

Column-to-column reproducibility

—Changes in retention timeChanges in retention time

—Changes in spacing between peaks

—Changes in resolution

Column lifetime

—Peak shape deteriorates over time

—Increased pressure—Increased pressure

—Changes in resolution

Tailing of specific proteins

Resolution

Throughput

©2011 Waters Corporation 37

Page 38: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Agendag

Ion-Exchange Chromatography— Theory and practice y p

— Protein-Pak Hi Res IEX Columns

— Method Development Strategies

o Auto•Blend Plus Technology and ACQUITY UPLC H-Class Bio gy QSystem

Size-Exclusion Chromatography— Theory and practice

— ACQUITY UPLC for SEC

o ACQUITY BEH200 SEC, 1.7 µm Columns— Factors Influencing Component Resolution— Ways to Maximize SEC Column Life

©2011 Waters Corporation 38

Page 39: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Advantages of UPLC Technologyfor SEC Separations

Requires Columns and Instrumentation to Minimize Band Spreading

Waters UPLC®HPLC

p

Narrow PeakIncreased Sensitivity

Waters UPLC®

TechnologyBroad BandBroad PeakLess Sensitivity

HPLC

Increased Resolving Power

Less SensitivityLess Resolving Power

©2011 Waters Corporation 39

Page 40: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

Effect of LC System Dispersion onBEH200 SEC mAb Separationp

Larger system dispersion decreases component resolution

0.20

0.30 BEH200 SEC 1.7um Column (4.6 x 300mm)

HPLC System

USP Res= 1.37

AU

0 00

0.10

0.00

0.20

0.25 Waters ACQUITY UPLC SystemUSP Res= 2.37 BEH200 SEC 1.7um

AU

0.05

0.10

0.15 Column (4.6 x 300mm)

©2011 Waters Corporation 40

0.00

Minutes2.00 4.00 6.00 8.00 10.00 12.00 14.00 16.00 18.00 20.00 22.00 24.00 26.00 28.00

Page 41: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

UPLC-SEC vs HPLC-SECof mAb monomer and aggregatesgg g

0.065

0.070

0.065

0.070

HPLC 100% ACQUITY BEH200

0.045

0.050

0.055

0.060

0.045

0.050

0.055

0.060Silica-Diol

SEC 250Å 5µm7.8 x 300 mm

ACQUITY BEH200 SEC, 1.7 µm4.6 x 300mm

AU

0.030

0.035

0.040

0.045

AU

0.030

0.035

0.040

0.015

0.020

0.025

0.015

0.020

0.025

2.26 % Aggregate 2.24 %

Aggregate

0.000

0.005

0.010

0.000

0.005

0.010

©2011 Waters Corporation 41

Minutes2.00 4.00 6.00 8.00 10.00

Minutes5.00 10.00 15.00 20.00 25.00 30.00

8.00 30.008.00 30.00

Page 42: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

ACQUITY BEH200 SEC 1.7 µm ColumnsQ µ

Application Areas

—Determination of protein molecular weightDetermination of protein molecular weight

—Molecular weight range of 10,000 to 450,000 Daltons

—Determination of size heterogeneity in a protein sample

—Quantitation of protein aggregates primarily in therapeutic monoclonal antibodies.

©2011 Waters Corporation 42

Page 43: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

BEH Overview

The packing material is based on our patented Bridged Ethyl H b id b ti l d ff ti di l b di hi h Hybrid base particle and effective diol bonding, which provide a stable chemistry with minimal secondary interactions.

©2011 Waters Corporation 43

Page 44: Analysis of Biomolecules by SEC and IEX UPLC. · PDF fileAnalysis of biomolecules by SEC and Ion-Exchange UPLC ... with traditional HPLC. ©2011 Waters Corporation 2. Agenda Ion-Exchange

BEH200 SEC, 1.7um Column Batch Test

0 20

0.22

Analyte pI MW

1. Thyroglobulin, 3 mg/mL 4.6 669,000

2. IgG, 2 mg/mL (Vicam) 6.7 150,000

0.16

0.18

0.20

2

4

2. IgG, 2 mg/mL (Vicam) 6.7 150,000

3. BSA, 5 mg/mL 4.6 66,400

4. Myoglobin, 2 mg/mL 6.8, 7.2 17,000

5. Uracil, 0.1 mg/mL N/A 112

AU

0.12

0.14 35

0.06

0.08

0.10

1

0.02

0.04

©2011 Waters Corporation 44

0.00

Minutes0.00 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00

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BEH200 SEC, 1.7um Calibration BEH200 SEC, 1.7um Calibration CurveCurve

10000000

Analyte MWBlue Dextran 2,000,000Thyroglobulin 669,000β Amylase 200 000

100000

1000000IgG (~150,000 Da)

β-Amylase 200,000IgG, 150,000Amyloglucosidase 97000Conalbumin 75000BSA 66,400Ovalbumin 44 000

10000

100000

MW

Ovalbumin 44,000Carbonic Anhydrase 29,000Myoglobin 17,000Lysozyme 14,400Ribonuclease A 13,700Aprotinin 6 500

100

1000

Aprotinin 6,500Uracil 112

10

100

1 1.5 2 2.5 3 3.5 4 4.5 5

©2011 Waters Corporation 45

Elution Volume

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Protein Adsorption and SizeProtein Adsorption and Size--Exclusion Exclusion ChromatographyChromatographyg p yg p y

Proteins can interact or adsorb onto the SEC packing material

These interactions create undesired and unpredictable retention of proteins (i.e. proteins not separated by size in p ( p p ysolution)

SEC particles frequently coated with a hydrophilic reagent toSEC particles frequently coated with a hydrophilic reagent tominimize non-desired ionic interactions between proteins and packing material

Mobile phase additives (e.g., 150mM NaCl) may decrease non-desired ionic interactions between proteins and packing

l

©2011 Waters Corporation 46

material

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DIOL coating used to minimizenon-desired ionic interactionsbetween proteins and packing material

Ionic interactions between available negatively charged silanols on SEC particles and positive charges on proteins

p p g

SEC

-

SEC Particle

©2011 Waters Corporation 47

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DIOL Loss increases non-desired ionic interactions between proteins and packing material packing material

SEC Particle

-

Particle

©2011 Waters Corporation 48

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Comparative SEC Column Life

0.60

0.70

HPLC 100% Silica-DiolLysozyme, pKi = 10.7

AU

0 20

0.30

0.40

0.50 SEC 250Å 4µm4.6 x 300 mm

Injection 19

Suggestive of DIOL Bleed

0.00

0.10

0.20

Minutes5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 10.50 11.00 11.50 12.00 12.50 13.00 13.50 14.00 14.50 15.00

0.22

jInjection 618

AU

0.10

0.12

0.14

0.16

0.18

0.20

ACQUITY BEH200 SEC, 1.7 µm4.6 x 150 mm

I j ti 19

0.00

0.02

0.04

0.06

0.08

0 00 0 50 1 00 1 50 2 00 2 50 3 00 3 50 4 00 4 50 5 00 5 50 6 00 6 50 7 00 7 50 8 00 8 50 9 00 9 50 10 00

Injection 19Injection 618

©2011 Waters Corporation 49

Minutes0.00 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00

BEH200 shows minimal secondary interactions even after 600 injections

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NaCl will decrease ionic interactions between proteins and packing material

Ionic interactions between available negatively charged silanols on SEC particles and positive charges on proteins

p p g

Na +

Cl -

Na + Cl -

Na +

Na +

Cl - Cl -

SEC Na +

Na +

Na +

-

ParticleNa + Cl -

Na +

Na +

Na +

Cl

Cl -Cl -

Na +

©2011 Waters Corporation 50

Cl -

Na + Cl -Cl -

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Influence of Ionic Strength on Peak Shape and Retention on Silica-based SEC

0 06

0.08

Conventional 100% Silica-Diol CoatedSEC Column 4.6 x 300 mm 10mM

N Cl

and Retention on Silica based SECA

U

0.00

0.02

0.04

0.06

Minutes10.00 12.00 14.00 16.00 18.00 20.00 22.00 24.00 26.00 28.00 30.00 32.00 34.00 36.00 38.00 40.00 42.00 44.00 46.00 48.00 50.00

NaClLysozyme, pKi = 10.7

Minutes

AU

0.04

0.06

0.08 25mMNaCl

lysozyme

0.00

0.02

Minutes10.00 12.00 14.00 16.00 18.00 20.00 22.00 24.00 26.00 28.00 30.00 32.00 34.00 36.00 38.00 40.00 42.00 44.00 46.00 48.00 50.00

0 08

lysozyme

AU

0 00

0.02

0.04

0.06

0.08

100mMNaCllysozyme

©2011 Waters Corporation 51

0.00

Minutes10.00 12.00 14.00 16.00 18.00 20.00 22.00 24.00 26.00 28.00 30.00 32.00 34.00 36.00 38.00 40.00 42.00 44.00 46.00 48.00 50.00

Flow rate: 0.5 mL/min; Mobile phase: 10, 25 or 100 mM sodium phosphate, pH 6.8

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Influence of Ionic Strength on Peak Shape and Retention on BEH200 SEC

AU

0 12

0.18

0.24

0 12

0.18

0.24 ACQUITY BEH200 SEC 1.7 µm Column, 4.6 x 150mm

10mMN Cl

and Retention on BEH200 SEC A

0.00

0.06

0.12

Minutes5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 10.50 11.00 11.50 12.00 12.50 13.00 13.50 14.00 14.50 15.00

0.00

0.06

0.12

5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 10.50 11.00 11.50 12.00 12.50 13.00 13.50 14.00 14.50 15.00

NaClLysozyme, pKi = 10.7

AU

0.12

0.18

0.24

0.12

0.18

0.24

25mMNaCl

0.00

0.06

Minutes5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 10.50 11.00 11.50 12.00 12.50 13.00 13.50 14.00 14.50 15.00

0.00

0.06

5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 10.50 11.00 11.50 12.00 12.50 13.00 13.50 14.00 14.50 15.00

0.240.24

AU

0.06

0.12

0.18

0.06

0.12

0.18 100mMNaCl

©2011 Waters Corporation 52Flow rate: 0.5 mL/min; Mobile phase: 10, 25 or 100 mM sodium phosphate, pH 6.8

0.00

Minutes5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 10.50 11.00 11.50 12.00 12.50 13.00 13.50 14.00 14.50 15.00

0.005.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 10.50 11.00 11.50 12.00 12.50 13.00 13.50 14.00 14.50 15.00

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Agendag

Ion-Exchange Chromatography— Theory and practice y p

— Protein-Pak Hi Res IEX Columns

— Method Development Strategies

o Auto•Blend Plus Technology and ACQUITY UPLC H-Class Bio gy QSystem

Size-Exclusion Chromatography— Theory and practice

— ACQUITY UPLC for SEC

o ACQUITY BEH200 SEC, 1.7 µm Columns — Factors Influencing Component Resolution— Ways to Maximize SEC Column Life

©2011 Waters Corporation 53

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Factors Influencing Resolutiong

Resolution decreases with increasing volume and mass l dloads

Resolution decreases with increasing flow rateId l fl i l h i ll i h —Ideal flow rate is lower than typically running, however run time will be longer

l h l l hResolution increases with column length

Baseline resolution typically achieved at 50%-100% molecular weight difference—Proteins with less than 100% molecular weight difference

may not be acceptably resolved

©2011 Waters Corporation 54

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Mass Loading Capacity onBEH200 SEC, 1.7um 4.6 x 150mm,

3.125 µg Total LoadRs = 1.7

400 µg Total LoadRs = 1.5

0 010

0.012

0 60

0.70

BSA

BSA

0.012 0.70

AU 0.006

0.008

0.010

AU

0.40

0.50

0.60

BSA dimer BSA dimer

0.002

0.004

0.10

0.20

0.30BSA dimer

0.000

Minutes1.00 2.00 3.00 4.00 5.00 6.00

0.00

Minutes1.00 2.00 3.00 4.00 5.00 6.00

©2011 Waters Corporation 55

Constant injection volume, 20 µL Resolution decreases for mass loads of 3- 400 µg

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Volume Load Capacity onBEH200 SEC, 1.7um 4.6 x 150mm

1.60

,

Injection Volume

USP Resolution (Monomer-Dimer)

1.00

1.20

1.40 5 1.70

10 1.54

15 1.43

20 µL

AU

0.60

0.8020 1.27

5 µL

0 00

0.20

0.405 µL

0.00

Minutes1.80 2.00 2.20 2.40 2.60 2.80 3.00 3.20 3.40 3.60 3.80 4.00 4.20 4.40

Constant BSA concentration, 20 mg/mL

©2011 Waters Corporation 56

Resolution decreases for higher injection volumePoor peak shape observed at higher volumes

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Effect of Column Length on mAb Rsg

0.015 BEH200, SEC, 1.7um4 6 x 150 mm

20.1% Aggregate

AU

0.005

0.0104.6 x 150 mm

USP Res= 1.44

0.000

Minutes1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00

0.020

BEH200 SEC 1 719 9%

AU

0 005

0.010

0.015BEH200, SEC, 1.7um4.6 x 300 mm

19.9% Aggregate

USP Res= 1.72

0.000

0.005

Minutes1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00

©2011 Waters Corporation 57

Comparable aggregate quantitation Human IgG (Sigma), (load: 10 µg - 150mm; 20 µg -300mm): TUV: 280 nm

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Effect of Flow Rate on mAb Rs

AU 0.010

0.020

0.030

0.4 mL/min BEH200, SEC, 1.7um4.6 x 150 mm

0.000

Minutes3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00 11.00 12.00 13.00

0.030

AU 0.010

0.020

0.030

AU 0.010

0.020

0.030

AU

0.000

0.010

0.0200.35 mL/min

0.000

Minutes2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 10.50

0.000

Minutes2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 10.50

0 020

0.030

Minutes2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 10.50

AU

0.000

0.010

0.020

Mi t3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00 11.00 12.00 13.00 14.00 15.00

0.2 mL/min

©2011 Waters Corporation 58

Triplicate injectionsNo observable trend in aggregation with flow rate

Minutes

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Effect of Temperature onmAb SEC Peak Shapep

45 °CBEH200, SEC, 1.7um4 6 x 150 mm

0.63

0.70

0.7740 °C

4.6 x 150 mm

AU

0.35

0.42

0.49

0.56

30 °C

0.14

0.21

0.28

0.00

0.07

2.10 2.45 2.80 3.15 3.50

©2011 Waters Corporation 59

Chimeric IgG 0.4 mL/min, 25 mM Sodium Phosphate, 0.15m NaCl, pH 6.8

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Effect of Salt Cation on BEH200 SEC, 1.7um 4.6 x 150mm Peak Shapep

Different cations of chloride salt additive

©2011 Waters Corporation 60

Buffer: 10mM sodium phosphate, pH 6.8 and 200mM of additive Sample: Thyroglobulin, IgG, BSA, Myoglobin, Uracil

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Agendag

Ion-Exchange Chromatography— Theory and practice y p

— Protein-Pak Hi Res IEX Columns

— Method Development Strategies

o Auto•Blend Plus Technology and ACQUITY UPLC H-Class Bio gy QSystem

Size-Exclusion Chromatography— Theory and practice

— ACQUITY UPLC for SEC

o ACQUITY BEH200 SEC, 1.7 µm Columns — Factors Influencing Component Resolution— Ways to Maximize SEC Column Life

©2011 Waters Corporation 61

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BEH200 SEC, 1.7um Care and Use:(Ways to extend column life)( y )

Preparation of SEC Mobile Phase and Needle Wash— Pre filter through 0 2 or 0 45 um filter (i e Don’t inject particulates)— Pre filter through 0.2 or 0.45 um filter (i.e, Don t inject particulates)— Use high purity water— Replace mobile phases weekly and do not “top off”

Use of BEH200 SEC, 1.7um Guard Column

Attention to SEC Eluent SinkersAttention to SEC Eluent Sinkers— Use titanium sinkers NOT stainless steel— Sinkers can be major source of bacterial contamination

o Consider occasional sinker replacement or 70% alcohol “pull through” to prevent problems

Column Storage Considerations- Overnight: Continuously flush with the mobile phase at 10 - 20% of the

©2011 Waters Corporation 62

g y pmaximum recommended flow rate- Extended: Store in the HPLC grade water with 20% methanol

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BEH200 SEC, 1.7um Guard E(4.6 x 30mm) Extends UPLC SEC Column Life

©2011 Waters Corporation 63

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QC Protein Standards Mix onBacterial Contaminated, BEH200 SEC Column

BEH200, SEC, 1.7um4 6 x 150 mm4.6 x 150 mm

©2011 Waters Corporation 64

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Summary:Waters ACQUITY UPLC SEC System SolutionQ y

New SEC column chemistry based on BEH particles

T UPLC tiTrue UPLC separation

Application benefits

— Reduced secondary interaction

— Improved physical and chemical column lifetime

— Improved column-to-column reproducibility

— Improved resolutionp

— Improved throughput

Synergistic combination of UPLC system and column

Higher throughput compared to traditional HPLC Higher throughput compared to traditional HPLC

©2011 Waters Corporation 65