an energy absorbing layer for the structure outflow ... · cardiovascular diseases represent a...

9
Proceedings of the ECCOMAS Thematic International Conference on Simulation and Modeling of Biological Flows (SIMBIO 2011) September 21–23, 2011, VUB, Brussels, Belgium An Energy Absorbing Layer for the Structure Outflow Boundary Applied to 2D Heart Valve Dynamics with Multiple Structures. Thomas Wick * 1 Institute of Applied Mathematics, University of Heidelberg INF 293/294, 69120 Heidelberg, Germany, [email protected] Abstract In valve-blood-wall interactions, the radius of the blood vessel wall may vary by up to ten percent. This structural displacement is quite large, leading to difficulties at the artificial boundaries of the computational domain. In this work, we investigate the dynamical behavior of the aortic heart valve and we introduce a technique that absorbs structural energy and prevents the back flow of structure waves at the outflow. To this end, the computational domain is prolonged by an artificial layer on which we solve a damped version of the hyperbolic structure equations. The coupling of fluid and structure equations is realized by a monolithic solution algorithm, where the fluid equations are rewritten in the ‘arbitrary Lagrangian Eulerian’ framework. The structure is divided into different parts to account for the different physical properties of tissue of the heart, the valves, and the aorta. Specifically, we are dealing with varying structure coefficients and different constitutive tensors. We present numerical examples that substantiate the performance of our techniques. Keywords: finite elements, fluid-structure interaction, Arbitrary Lagrangian Eulerian method, stability, damped wave equation Introduction Cardiovascular diseases represent a major fraction of mortalities in industrialized countries. For this reason, there is an increasing demand from the medical commu- nity for rigorous and quantitative investigations of the hu- man cardiovascular system [1]. However, the complexity of the circulatory system makes modeling and simulation challenging because there are many fundamental factors that must taken into account. In this work, we focus on the main component of the circulatory system: the heart. More specifically, we are interested in the modeling and the simulation of the aor- tic heart valve, which pumps oxygenated blood from the left ventricle into the aorta. This arrangement implies that there is an interaction between the blood, the heart walls and the vessel walls. The mathematical approach of choice to construct an appropriate model and simulation of these dynamics is the fluid-structure interaction method. Beyond this approach, fluid-structure interactions have significant influences in bio-mechanics [1–4]. Various approaches to model heart valve dynamics ex- ist. Usually, these approaches are considered as fluid- structure interaction problems that can be solved by dif- ferent solution algorithms [5–9]. Here, we use the ‘ar- bitrary Lagrangian-Eulerian’ framework (ALE), which is frequently used in the literature. We solve the problem by a monolithic solution algo- rithm (see [10–14]) because one must overcome the well- known added-mass effect that occurs when the density of a fluid and a structure are of the same order, such as in hemodynamics [15]. In addition, a closed setting for the equations is necessary for rigorous goal-oriented error es- timation [16]. By construction, the ALE approach is not capable of modeling topological changes, which occur when two valves touch each other. This could be achieved, for in- stance, with the immersed boundary method [7], the Fic- titious Domain method [17], or with a fully Eulerian ap- proach [13]. However, this point is of less importance in our studies, because we focus on boundary conditions for the structure of the outflow section. This issue should not be neglected because the radius of the aorta may vary in a range of 5 - 10 percent between diastole and systole (the two phases in a cardiac cycle) [1]. This is a large displace- ment of the blood vessel wall that effects both the flow field and the blood vessel dynamics. In recent years, much effort has been spent on model- ing appropriate descriptions for fluid and pressure condi- tions on the artificial outflow boundary [4, 18–21]; these descriptions are related to the flow field. Consideration of appropriate structural conditions becomes important when dealing with the large deflections of the blood vessel walls. SIMBIO 2011 1

Upload: others

Post on 30-Jun-2020

1 views

Category:

Documents


0 download

TRANSCRIPT

Page 1: An Energy Absorbing Layer for the Structure Outflow ... · Cardiovascular diseases represent a major fraction of mortalities in industrialized countries. For this reason, there is

Proceedings of the ECCOMAS Thematic International Conference onSimulation and Modeling of Biological Flows (SIMBIO 2011)September 21–23, 2011, VUB, Brussels, Belgium

An Energy Absorbing Layer for the Structure Outflow Boundary Applied to 2DHeart Valve Dynamics with Multiple Structures.

Thomas Wick∗

1 Institute of Applied Mathematics,University of HeidelbergINF 293/294, 69120 Heidelberg, Germany,[email protected]

AbstractIn valve-blood-wall interactions, the radius of the blood vessel wall may vary by up to ten percent. This structuraldisplacement is quite large, leading to difficulties at the artificial boundaries of the computational domain. In thiswork, we investigate the dynamical behavior of the aortic heart valve and we introduce a technique that absorbsstructural energy and prevents the back flow of structure waves at the outflow. To this end, the computational domainis prolonged by an artificial layer on which we solve a damped version of the hyperbolic structure equations. Thecoupling of fluid and structure equations is realized by a monolithic solution algorithm, where the fluid equations arerewritten in the ‘arbitrary Lagrangian Eulerian’ framework. The structure is divided into different parts to accountfor the different physical properties of tissue of the heart, the valves, and the aorta. Specifically, we are dealing withvarying structure coefficients and different constitutive tensors. We present numerical examples that substantiate theperformance of our techniques.Keywords: finite elements, fluid-structure interaction, Arbitrary Lagrangian Eulerian method, stability, damped waveequation

IntroductionCardiovascular diseases represent a major fraction of

mortalities in industrialized countries. For this reason,there is an increasing demand from the medical commu-nity for rigorous and quantitative investigations of the hu-man cardiovascular system [1]. However, the complexityof the circulatory system makes modeling and simulationchallenging because there are many fundamental factorsthat must taken into account.

In this work, we focus on the main component of thecirculatory system: the heart. More specifically, we areinterested in the modeling and the simulation of the aor-tic heart valve, which pumps oxygenated blood from theleft ventricle into the aorta. This arrangement implies thatthere is an interaction between the blood, the heart wallsand the vessel walls. The mathematical approach of choiceto construct an appropriate model and simulation of thesedynamics is the fluid-structure interaction method. Beyondthis approach, fluid-structure interactions have significantinfluences in bio-mechanics [1–4].

Various approaches to model heart valve dynamics ex-ist. Usually, these approaches are considered as fluid-structure interaction problems that can be solved by dif-ferent solution algorithms [5–9]. Here, we use the ‘ar-bitrary Lagrangian-Eulerian’ framework (ALE), which isfrequently used in the literature.

We solve the problem by a monolithic solution algo-rithm (see [10–14]) because one must overcome the well-known added-mass effect that occurs when the density ofa fluid and a structure are of the same order, such as inhemodynamics [15]. In addition, a closed setting for theequations is necessary for rigorous goal-oriented error es-timation [16].

By construction, the ALE approach is not capableof modeling topological changes, which occur when twovalves touch each other. This could be achieved, for in-stance, with the immersed boundary method [7], the Fic-titious Domain method [17], or with a fully Eulerian ap-proach [13]. However, this point is of less importance inour studies, because we focus on boundary conditions forthe structure of the outflow section. This issue should notbe neglected because the radius of the aorta may vary in arange of 5 − 10 percent between diastole and systole (thetwo phases in a cardiac cycle) [1]. This is a large displace-ment of the blood vessel wall that effects both the flow fieldand the blood vessel dynamics.

In recent years, much effort has been spent on model-ing appropriate descriptions for fluid and pressure condi-tions on the artificial outflow boundary [4, 18–21]; thesedescriptions are related to the flow field. Consideration ofappropriate structural conditions becomes important whendealing with the large deflections of the blood vessel walls.

SIMBIO 2011 1

Page 2: An Energy Absorbing Layer for the Structure Outflow ... · Cardiovascular diseases represent a major fraction of mortalities in industrialized countries. For this reason, there is

Specifically, we are interested in the capability to absorboutgoing waves (i.e., energy) to prevent the back flow ofwaves.

To the best of our knowledge, this topic is novel, andothers have only just begun with investigations [22]. Here,the authors consider the flow rate conditions of the fluidproblem and a complete set of (non-defective) boundaryconditions for the structure problem on the artificial out-flow section.

Originally, energy absorption problems drew attentionin acoustic and electromagnetic wave propagation analysis[23, 24]. The main difficulty is, that the standard Dirichletand Neumann boundary conditions are not able to absorbenergy from outgoing waves. As a result, various approxi-mate boundary conditions have been used to absorb incom-ing waves. One approach to eliminating reflections wassuggested by appending an artificial layer to the computa-tional domain. This layer is intended to absorb the waves.Specifically, one can use a perfectly matched layer (PML)[25]. We employed this idea to extend the computationaldomain that is used to absorb the outgoing waves in ourfluid-structure interaction problem. The major disadvan-tage of this approach is the increased computational costdue to solving both the complete fluid equations and thestructure equations on an artificial domain. To overcomethis drawback, we could solve reduced equations in the ar-tificial layer or we would use an initial, coarser mesh in theartificial part. We employed the latter strategy to deal withthe drawback, and we coarsened the initial mesh by handin that region.

The last issue that will be studied in this work, ac-counts for the different physical properties of the structures(namely the tissue) of the heart, the valves, and the aorta.To this end, we use two strategies. First, we use the sameconstitutive material model but with varying coefficientsto run the simulations. Second, we upgrade our solutionalgorithm while using two different constitutive structuretensors. This verification has important consequences forfuture applications and more detailed modeling of arterialtissue, for instance.

This contribution is organized as follows: In SectionThe Fluid-Structure Problem, we describe the equationsfor both the fluid and the structure, including a dampedhyperbolic equation. The proposed method is stable on thecontinuous level. Afterwards, we formulate the problem ina monolithic setting. Section Discretization is devoted to abrief description of the discretization process. In addition,we state a stabilization technique for the convective termthat is based on streamline diffusion. In the last section, weexemplify our proposed method by presenting prototypicalnumerical examples. The parameters for both the materialand the geometry are taken from the literature. The compu-tations are performed with the numerical software librarydeal.II [26].

The Fluid-Structure ProblemWe denote by Ω ⊂ Rd, d = 2, 3, the domain of the

fluid-structure interaction problem. This domain is sup-posed to be time independent but consists of two time de-pendent sub-domains Ωf (t) and Ωs(t). The interface be-tween both domain is denoted by Γi(t) = ∂Ωf (t)∩∂Ωs(t).The initial (or later reference) domains are denoted by Ωfand Ωs, respectively, with the interface Γi. Further, we de-note the outer boundary with ∂Ω = Γ = ΓD ∪ ΓN whereΓD and ΓN denote Dirichlet and Neumann boundaries, re-spectively.

We adopt standard notation for the usual Lebesgue andSobolev spaces [27]. We use the notation (·, ·)X for ascalar product on a Hilbert space X and 〈·, ·〉∂X for thescalar product on the boundary ∂X . Specifically, we defineH1

0 (X) = v ∈ H1(X) : v = 0 on ΓD ⊂ ∂X. We willuse the short notation VX := H1(X), V 0

X := H10 (X)

and LX := L2(X), L0X := L2(X)/R. For the time-

dependent problems, we define a time interval I := [0, T ]with the end time value T <∞.

We expect that the reader is familiar with continuummechanics and we omit differentiation between scalar-valued spaces (and variables) and their vector-valued ex-tensions.

In the following, we study the interaction of an incom-pressible Newtonian fluid and a structure of hyperbolictype [19]. The equations for fluid and structure are de-fined in their natural frameworks. The fluid problem readsin Ωf (t):

ρf ∂tvf |A + ρf (vf − w) · ∇vf − divσf = 0divvf = 0

vf = vD on Γf,in(t), σnf = gf,N on Γf,N (t),(1)

with the Cauchy stress tensor σf . The (undamped) struc-ture problem is defined by:

ρs∂2t us − div(F Σs) = 0 in Ωs,

uf = 0 on Γs,D, F Σsns = 0 on Γs,N , (2)

with the second Piola-Kirchhoff tensor Σs and the defor-mation gradient F = I + ∇u, where I denotes the iden-tity tensor. The coupling conditions are given by (withdet(F ) = J):

vf = w on Γi, (3)

J σf F−T nf + F Σsns, = 0 on Γi, (4)

where w denotes the fluid domain velocity that can be con-structed by w = ∂tus on Γi. The stress tensors, σf andΣs, will be specified below. The viscosity and the densityof the fluid are denoted by νf and ρf , respectively. Theelastic structure is characterized by the Lame coefficientsµs, λs.

The physical unknowns are the (vector-valued) fluidvelocity vf : Ωf × R+ → R3, the (scalar) fluid pres-sure p : Ωf × R+ → R, and the (vector-valued) structure

SIMBIO 2011 2

Page 3: An Energy Absorbing Layer for the Structure Outflow ... · Cardiovascular diseases represent a major fraction of mortalities in industrialized countries. For this reason, there is

displacement us : Ωs × R+ → R3. The ALE mapping isdenoted by A : Ω→ Ω(t) and is constructed from the dis-placements of the moving interface, i.e., uf = Ext(us|bΓi

).This condition is used to solve an additional partial dif-ferential equation that is explained below. Furthermore,any function q ∈ Ω is defined on Ω by q(x) = q(x) withx = A(x, t).

Coupling conditions for multiple structuresTo extend the standard fluid-structure interaction prob-

lem for the in-cooperation of multiple structures, we firstrecall the coupling conditions:

us,1 = us,2 on Γi,

F Σs,1 = F Σs,2 on Γi.(5)

In a variational framework, the second coupling condi-tion in Equation (5) becomes an implicit condition. TheDirichlet-like condition of Equation (5) is strongly im-posed in the corresponding Sobolev space.

The multi-structure models become important whenconsidering a prototypical heart valve simulation. Here,we describe all structure parts (the section of the heart, thevalves, and the aorta) by the same material model but withvarying coefficients. These are unsteady on the interfacewhere the different structures touch each other. We do notexpect difficulties by using different constitutive modelsfor the different structure parts. Its verification is impor-tant because one is interested in modeling blood vesselswith more sophisticated material models [31, 32]. But, incontrast to the coupling of fluids and structures together,where the Cauchy stress tensor changes entirely, this kindof coupling is of a lower level, because the stress tensorshave similar meaning and should not cause any difficul-ties. We address this subject in a numerical example below,where this assumption will be established.

However, the introduced structure models in this work,are not sufficient to obtain quantitative correctness of thewall stresses [19, 30, 31]. This limitation is because resid-ual stresses (that are present in complex structures in bio-logical tissues with composite reinforced fibers) can notbe represented by these models. To represent residualstresses, more elaborated models are required [30–33].Nevertheless, the STVK model permits us to study the nu-merical correctness of the proposed formulation and to val-idate the model.

Construction of the ALE mappingThe fluid mesh motion is constructed by posing an ad-

ditional equation, which is driven by the motion of the in-terface Γi(t), i.e., A = us on Γi, leading to w = vs onΓi. Further, we fix the inlet and the outlet boundary partsby uf = 0 on Γf,in(at left) ∪ Γf,out(at right) (see Figure1). In the fluid domain Ωf , the transformation A is arbi-trary but should satisfy certain regularity conditions (C1-diffeomorphism) [19]. Specifically, the fluid mesh is con-structed by solving a biharmonic equation (for large mesh

H D

Stiff structure

d A(t)

LheartLaorta

Lext

Structure with damping

Aortic Sinus

Soft structure

Figure 1 Configuration for the numerical examples.

deformations without re-meshing):

∆2uf = 0 in Ωf ,

uf = 0 on Γf,in ∪ Γf,out,

∂nuf = 0 on Γf,in ∪ Γf,out,

uf = us on Γi.

The ALE map is constructed by solving a mixed formu-lation of the biharmonic equation in the sense of Ciarlet[28]. We introduce an auxiliary variable η = −∆u andobtain two differential equations:

η = −∆u in Ωf ,

−∆η = 0 in Ωf . (6)

By employing the two equations (6) to construct the ALEmapping, the first equation is defined on all Ω, whereas thesecond equation is only defined in the fluid domain Ωf .For more details and a comparison study of different meshmotion techniques, we refer to [14].

Absorbing conditions for the structureOver the last decade, much effort has been spent on de-

scriptions of appropriate conditions in (artificial) inlet andoutlet boundaries (of blood vessels) for fluid and pressure(see [1, 4, 21, 22], and the many references cited therein).Specifically, the fluid-wall interaction is responsible for thepropagation of pulse pressure waves in the blood vessel.This is a characteristic issue that only appears in compliantvessels and not in domains with fixed walls.

In our study, we focus on boundary conditions for theblood vessel in the outflow. Often, the vessel structure isfixed in the horizontal direction and left free in the verticaldirection [21]. Recently, a first step in addressing struc-tural conditions has been taken in [22]. Here, the authorscompare three different strategies by extending methodsfrom the rigid case. However, they apply these strategiesto blood vessel computations with moderate deformationsbut not to heart valve dynamics.

We turn now to interaction processes occurring in heartvalve dynamics. A prototypical configuration is sketchedin Figure 1. Usually, one would solve the equations byusing Ω and imposing Dirichlet or Neumann conditions onΓi,s. For both types of conditions, waves are reflected atthe outflow boundary, which is illustrated in Figure 2 fora clamped structure (homogenous Dirichlet conditions) onΓs,out.

SIMBIO 2011 3

Page 4: An Energy Absorbing Layer for the Structure Outflow ... · Cardiovascular diseases represent a major fraction of mortalities in industrialized countries. For this reason, there is

In our approach, we extend the computational domainby using a well-known technique from acoustics, which iscomparable to the perfectly matched layer approach [25].

Figure 2 Sequence of states of a reflected wave at thestructure outflow boundary at different time steps: incoming

waves are displayed in the left and middle figure. Thereflected wave is shown in the figure at the bottom.

In the artificial part Ωext = Ωextf ∪Ωexts of the computa-tional domain, we prescribe a damped version of the struc-ture equations in Ωexts , to absorb outgoing waves and toprevent structure reflections. One drawback of this methodis the higher computational cost that results because wesolve both the full fluid equations and the structure equa-tions in the artificial layer. However, we coarsen the gridmanually in the artificial domain because we are not in-terested in observing any physical quantity in that domain.Ideally, one would solve reduced models on the artificialdomain or coarsen the mesh automatically during the so-lution process. Here, one could use goal-oriented meshadaption with the dual weighted residual method (DWR)[16]. A simplified version of the DWR method for a sta-tionary setting for our configuration was tested in [29].

The modified structure problem for the extended do-main is defined by:

ρs∂2t us − div(F Σs(us)) + γw∂tus = 0 in Ωexts ,

with γw ≥ 0. Here, the damping term is referred to asweak damping.

In the following, we pose a standard mixed formulationfor the structure equations,

ρs∂tvs − div(F Σs(us)) + γwvs = 0 in Ωexts ,

ρs∂tus − vs = 0 in Ωexts . (7)

The modified structure Equation (7) reduces to the originalEquation (2) by setting the damping parameter to γw =0. Therefore, we are dealing in the following only withEquation (7) in Ωs, and we omit differentiation betweenΩs and Ωexts .

For structural damping, one could also use a dampingform that is related to the entire structural operator. Thiskind of damping is a so-called strong damping and leads toa modification of the interface conditions between the fluidand the structure. This issue is examined in [39].

The variational form in the reference domainSo far, the description is not related to a specific so-

lution algorithm. In this section, we specify our solutionframework and formulate the equations in a monolithic set-ting. The coupling of the equations of Problem 1 with 7via the conditions in Equation (4) is derived in the samemanner as [14]. To this end, all equations are defined (andsolved) in the reference configuration Ω = Ωf ∪ Ωs. Acontinuous variable u in Ω, defining the deformation in Ωs,and supporting the transformation in Ωf , is defined. Then,we get the standard relations

A := id+ u, F := I + ∇u, J := det(F ). (8)

Furthermore, the velocity v and the additional displace-ment variable η are common continuous functions for bothsubproblems. The pressure p should be discontinuous overthe interface Γi because there is no physical relation be-tween pf and ps. The problem reads:

Find v, u, η, p ∈ vD+ V 0×uD+ V 0× V × L0,such that v(0) = v0 and u(0) = u0, for almost all timesteps t ∈ I , and

(J ρf∂tv, ψv)Ωf

+(ρf J(F−1(v − wf ) · ∇)v), ψv)bΩf

+(J σf F−T , ∇ψv)bΩf+ (ρs∂tv, ψv)bΩs

+(F Σs, ∇ψv)bΩs+ γw(∂tus, ψv)bΩs

= 0 ∀ψv ∈ V 0,

(∂tu− v, ψu)bΩs+ (αu∇η, ∇ψu)bΩf

= 0 ∀ψu ∈ V 0,

(αuη, ψη)bΩ + (αu∇u, ∇ψη)bΩ = 0 ∀ψη ∈ V ,

(div(J F−1v), ψp)bΩf+ (p, ψp)bΩs

= 0 ∀ψp ∈ L0,

with ρf , ρs, νf , µs, λs, F , J , and a positive (small) dif-fusion parameter αu. The stress tensors, σf and Σs, aredefined as

σf := −pfI + ρfνf (∇vf F−1 + F−T ∇vTf ),

ΣSTVKs := (λs(trE)I + 2µsE),

σINHs := −pI + µ1F F

T ,

where F Σs = J σsF−T gives the link between the differ-

ent stress tensor notations.The viscosity and the density of the fluid are denoted

by νf and ρf , respectively. The function g represents theNeumann boundary conditions for both physical bound-aries (e.g., zero stress at the outflow boundary), and normalstresses on Γi. Later, this boundary represents the interfacebetween the fluid and the structure. The structure is charac-terized by the density ρs and the Lame coefficients µs, λs.For the STVK material, the compressibility is related to thePoisson ratio νs (νs < 1

2 ).

SIMBIO 2011 4

Page 5: An Energy Absorbing Layer for the Structure Outflow ... · Cardiovascular diseases represent a major fraction of mortalities in industrialized countries. For this reason, there is

This problem is completed by an appropriate choice ofthe two coupling conditions on the interface. The continu-ity of velocity across Γi is strongly enforced by requiringone common continuous velocity field on the whole do-main Ω. The continuity of normal stresses is given by

(J F ΣsF−T ns, ψv)bΓi= (J σf F−T nf , ψv)bΓi

. (9)

By omitting this boundary integral jump over Γi, the weakcontinuity of the normal stresses becomes an implicit con-dition of the fluid-structure interaction problem.

To ease the notation, the structure stress tensors areconsidered in the above problem as follows:

Σ :=n∑i

Σi, n = 1, 2, 3,

where Σi denotes the sub-structure tensor of each struc-tural problem.

DiscretizationTo discretize the non-linear problem, we introduce a

semi-linear form and we write the (non-linear) equationsystem in compact notation: Find U = v, u, η, p ∈ X0,where X0 := vD + V 0 × uD + V 0 × V × L, suchthat ∫ T

0

A(U)(Ψ) dt =∫ T

0

F (Ψ) dt ∀Ψ ∈ X, (10)

where X = V 0× V 0× L0. The time integral is defined inan abstract sense such that the equation holds for almost alltime steps. The linear form is given by F (Ψ) ≡ 0 becausewe neglect volume forces. The semi-linear form A(U)(Ψ)is defined by

A(U)(Ψ) = (J ρf∂tv, ψv)bΩf

+ (ρf J(F−1(v − w) · ∇)v), ψv)bΩf

+ (J σf F−T , ∇ψv)bΩf+ (ρs∂tv, ψv)bΩs

+ (J σsF−T , ∇ψv)bΩs+ γw(v, ψv)bΩs

− 〈g, ψv〉bΓN+ (αuη, ψη)bΩ

+ (αu∇u, ∇ψη)bΩ + (∂tu, ψu)bΩs

− (v, ψu)bΩs+ (αu∇η, ∇ψu)bΩf

+ (div (J F−1v), ψp)bΩf+ (p, ψp)bΩs

.

(11)

Temporal discretization is based on finite differences andthe one step-θ schemes [34]. We use the shifted Crank-Nicolson scheme based on finite differences that was de-veloped for this ALE scheme in [14]. Spatial discretizationin the reference configuration Ω is treated by a conformingGalerkin finite element scheme, leading to a finite dimen-sional subspace Xh ⊂ X . The discrete spaces are based onthe Qc2/P

dc1 element for the fluid problem [35]. The struc-

ture problem is discretized by the Qc2 element. The non-linear problem is solved by the Newton method where the

Jacobian is derived by exact linearization of the directionalderivatives [14]. Here, the linear equations are solved witha direct solver (UMFPACK).

Residual based stabilization for the convective termModeling blood flow at the exit of the aortic valve leads

to a convection-dominated problem with a Reynolds num-ber of ∼ 4500 [30]. For this reason, we must stabilize ourformulation. The first ideas on this subject go back to [36].Our method of choice is the streamline upwind Petrov-Galerkin (SUPG) method. A simplified (non-consistent)version in Ωf reads:

sSUPG(Ukh)(Ψ)

:=

MXm=1

8><>:Z

Im

XcK∈Tm

h

(ρf (J bF−1vf · b∇)vf , δK,m(vkh · b∇ bF−1

)ψv)cK

9>=>; .

with

δK,m = δ0h2K

6νf + hK ||vkh||K, δ0 = 0.1.

For more details on the choice of these parameters, we re-fer to [37].

Numerical TestsTo test our proposed method, we set up a prototypical

problem. The data for the material parameters and the ge-ometry are taken from the literature [1, 30], and have beendiscussed with a medical doctor. One cardiac cycle has atime length of T = [0s, 0.9s]. Four time cycles are usedto run the computation. The time step size k is chosen inthe range of 0.02s − 0.001s to identify convergence withrespect to time. The results are split into three sections.In the first set of computations, we validate the model ina straight channel. Afterwards, we present results for acurved tube, which has a closer geometrical relationshipto the ‘real’ aorta. In the last part, we discuss our resultsobtained by using different constitutive structure tensors.

ConfigurationThe (reference) configuration Ω of the numerical test

case is illustrated in Figure 1. Specifically, we set Lheart +Laorta = 6.0cm, Lext = 12cm, H = 2.9cm, D = 2.5cm,and d = 0.5cm. The distance between the two valves waschosen to be sufficiently large to avoid topological difficul-ties.

Inflow and boundary conditionsA time-dependent parabolic velocity inflow profile is

prescribed on Γin (left boundary H), and is sketched inFigure 3. This inflow profile is scaled by a constant fac-tor 0.1. The ‘do-nothing’ condition is used on Γout (rightboundary D).

The structure is clamped on Γin and Γout. On the otherparts, the structure is left free to allow the walls to move.Specifically, the structure on the outflow boundary of theextended domain is fixed by homogenous Dirichlet con-ditions. Here, we assume that all reflections have alreadybeen absorbed by the damped structure equations.

SIMBIO 2011 5

Page 6: An Energy Absorbing Layer for the Structure Outflow ... · Cardiovascular diseases represent a major fraction of mortalities in industrialized countries. For this reason, there is

30

40

50

60

70

80

90

100

110

120

130

140

0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9

Flo

w r

ate

[cm

/s]

Time [s]

Figure 3 Interpolated flow rate profile in one cardiac cycle,which is imposed at the inflow boundary.

Quantities of comparison and their evaluationWe evaluate the deflections in both the x- and y-

directions at the tails of one valve, at the point A(0) =(3.64, 0.35). Moreover, we measure the wall stresses be-tween the fluid and the structure in the upper part of thewall (over the length Laorta at the interface between thefluid and the structure). The upper wall measurement isimportant in medical engineering applications where highstresses behind the aortic heart valve can lead to an aor-tic dissection. We measured the minimal (min), maximal(max), and amplitude (ampl) values.

ParametersFor the fluid, we use the density ρf = 1gcm−3, and

the viscosity νf = 0.03cm2s−1. The elastic structureis characterized by the density ρs = 1gcm−3, the Pois-son ratio νs = 0.3, and the Lame coefficients µheart =108gcm−1s−2, µvalve = 5.0 ∗ 105gcm−1s−2, µaorta =106gcm−1s−2. The (weak) damping parameter is givenby γw = 104.

Results for valve dynamics in a straight channelThe results indicate that our proposed model is suitable

to run valve dynamics for a prototypical configuration. Weshow at least two time levels and three mesh levels to iden-tify convergence with respect to time and space, respec-tively. The results of the physical quantities are summa-rized in [38, 39]. The qualitative behavior of the quantitiesof interest for the last three cycles can be observed in Fig-ure 4.

0

0.1

0.2

0.3

0.4

0.5

0.6

1 1.5 2 2.5 3 3.5

y d

isp

lace

me

nt [c

m]

Time [s]

-2000

-1500

-1000

-500

0

500

1000

1500

1 1.5 2 2.5 3 3.5

Wa

ll str

ess [g

/cm

s^2

]

Time [s]

Figure 4 Evaluation of the x and y displacements (top) andwall stresses in the x and y-directions (bottom) for the valve

dynamics in a straight channel.

We show the qualitative behavior of the results in the

Figure 5. If the damping parameter is too low, structurewaves propagate through the whole structure domain. Onthe other hand, if the damping parameter chosen is toohigh, the structure becomes too stiff and outgoing wavesare reflected.

Figure 5 Valve simulations in a straight channel with too lowdamping γw = 103 (top), with too strong damping γw = 106

(middle), and with proper damping γw = 104 (bottom).

Figure 6 From the left to the right and from the top to thebottom: time sequence of solutions of the x-velocity to thenon-stationary valve simulations within one cardiac cycle.The highest velocity is indicated in red. Fluid back flow isindicated in light blue, caused by compliance of the vessel

walls and the incompressibility of the fluid.

Results for valve dynamics in a curved channelThis example is a slight modification of the previous

example; here, the geometry has a closer relation to a ‘real’blood vessel (see Figure 7). The qualitative behavior ofthe quantities of interest is comparable to the results of thestraight channel, which is illustrated in Figure 8.

SIMBIO 2011 6

Page 7: An Energy Absorbing Layer for the Structure Outflow ... · Cardiovascular diseases represent a major fraction of mortalities in industrialized countries. For this reason, there is

Figure 7 Valve simulations in a curved domain with properdamping γw = 104.

-0.05

0

0.05

0.1

0.15

0.2

0.25

0.3

0.35

1 1.5 2 2.5 3 3.5

y d

isp

lacem

en

t [c

m]

Time [s]

-1500

-1000

-500

0

500

1000

1500

1 1.5 2 2.5 3 3.5

Wa

ll str

ess [

g/c

m s

^2]

Time [s]

Figure 8 Evaluation of the x and y displacements (top) andthe wall stresses in the x and y directions (bottom) for the

curved configuration.

Results for valve dynamics with multiple structures

Up to now, the structure was described by the samestructure model, namely the STVK material, but with vary-ing coefficients. In this numerical example, we test oursolution algorithm with different structure models, wherethe stress tensor changes entirely. Here, the heart sectionLheart and the leaflets are modeled by the INH material.The aorta Laorta and the artificial structure Laorta are stilldescribed by the STVK material.

The purpose of this example is twofold:

• Do we observe any difficulties of our monolithic so-lution algorithm? This is question is important withregard to the following task (see future ideas). Thestructure of blood vessel walls is a highly complexcomposition of different materials with constitutivestress tensors and different properties. Thus, we makea first step in this work, to compute a fluid-multi-structure system.

• Second, do we detect different behavior for the quan-tities of interest?

-0.1 0

0.1 0.2 0.3 0.4 0.5 0.6

1 1.5 2 2.5 3 3.5

y di

spla

cem

ent [

cm]

Time [s]

-2000-1500-1000-500

0 500

1000 1500

1 1.5 2 2.5 3 3.5

Wal

l str

ess

[g/c

m s

^2]

Time [s]

Figure 9 Evaluation of the y displacement (left) and the wallstress in the y-direction (right) for the valve dynamics with

multiple structures in a straight channel.

To respond to the first question, we observed that theconvergence of Newton’s method at each time step wasslightly better, while in-cooperating the multi-structuremodel. This result indicate that the solution algorithm per-forms better when modeling the valves and the heart sec-tion by the INH material. This is in agreement with our ob-servations of the comparison in [39]. There, we observeda failure (and bad convergence of the Newton method) ofthe STVK material for large deflections. In the present testcase, we observe again bad convergence of the STVK ma-terial for large deflections.

Second, we observe the same qualitative (nearly theidentical) behavior for all quantities of interest (see Fig-ure 9). This was expected for the wall stresses because westill used the STVK material in Laorta.

ConclusionsIn this work, we proposed a monolithic fluid-structure

framework to simulate two-dimensional long axis valvedynamics on prototypical configurations. Here, we wereconcerned with large structural deformations of the bloodvessel. To overcome difficulties with reflected structurewaves at the outflow boundary, we solved damped hyper-bolic equations on a prolongated domain. In further stud-ies, we plan to investigate the influence of strong and weakdamping parameters. Second, we plan to couple the modelwith absorbing boundary conditions for the fluid part thataccounts for wave propagations. Third, we will incooper-ate sophisticated structure equations to modeling arterialtissue.

AcknowledgmentsThe financial support by the DFG (Deutsche

Forschungsgemeinschaft) and the HGS MathCompHeidelberg is gratefully acknowledged. Further, theauthor thanks Jeremi Mizerski for discussing details onthe models; Rolf Rannacher, Alexandra Moura and AdeliaSequeira for fruitful discussions on boundary conditions.

SIMBIO 2011 7

Page 8: An Energy Absorbing Layer for the Structure Outflow ... · Cardiovascular diseases represent a major fraction of mortalities in industrialized countries. For this reason, there is

References

[1] A. Quarteroni, What mathematics can do for the sim-ulation of blood circulation, MOX Report (2006).

[2] C.A. Figueroa, I.E. Vignon-Clementel, K.E. Jansen,T.J.R. Hughes, C.A. Taylor, A coupled momentummethod for modeling blood flow in three-dimensionaldeformable arteries. Comput. Methods Appl. Mech.Engrg. 195, pp. 5685–5706 (2006)

[3] F. Nobile, C. Vergara, An Effective Fluid-StructureInteraction Formulation for Vascular Dynamics byGeneralized Robin Conditions. SIAM J. Sci. Comput.30(2), pp. 731–763 (2008)

[4] J. Janela, A. Moura, A. Sequeira, Absorbing bound-ary conditions for a 3D non-Newtonian fluid-structure interaction model for blood flow in arteries.Int. J. Engrg. Sci. (2010).

[5] Z. Jianhai, C. Dapeng, Z. Shengquan, ALE finite el-ement analysis of the opening and closing processof the artificial mechanical valve. Appl. Math. Mech.17(5), pp. 403–412 (2006)

[6] P. Le Tallec, J. Mouro, Fluid structure interactionwith large structural displacements. Comput. Meth.Appl. Mech. Engrg. 190, pp. 3039–3067 (2001)

[7] C. Peskin, The immersed boundary method. ActaNumerica - Cambridge University Press, pp. 1–39(2002)

[8] N. Diniz Dos Santos, J.F. Gerbeau, J.F. Bourgat, Apartitioned fluid-structure algorithm for elastic thinvalves with contact. Comp. Meth. Appl. Mech. Engrg.197(19–20), pp. 1750-1761 (2008)

[9] J. Vierendeels, K. Dumont, P.R. Verdonck, A par-titioned strongly coupled fluid-structure interactionmethod to model heart valve dynamics. J. Comp.Appl. Math. (2008)

[10] J. Hron, S. Turek, A monolithic FEM/MultigridSolver for an ALE formulation of fluid-structure in-teraction with applications in biomechanics. In Fluid-Structure Interaction: Modeling, Simulation, Opti-mization. Lecture Notes in Computational Scienceand Engineering, Vol. 53, pp. 146–170, Bungartz,Hans-Joachim; Schafer, Michael (Eds.), Springer(2006)

[11] M. A. Fernandez, J.F. Gerbeau. Algorithms for fluid-structure interaction problems. In CardiovascularMathematics: Modeling and simulation of the circu-latory system. Springer-Verlag, Italia, Milano (2009)

[12] H.-J. Bungartz, M. Schafer, Fluid-Structure In-teraction II: Modelling, Simulation, Optimization.Springer Series: Lecture Notes in Computational Sci-ence and Engineering (2010)

[13] T. Richer, T. Wick, Finite elements for fluid-structureinteraction in ALE and fully Eulerian coordinates.Comput. Meth. Appl. Mech. Engrg. 199, pp. 2633–2642 (2010)

[14] T. Wick, Fluid-Structure Interactions using DifferentMesh Motion Techniques. Comput. Struct. 13-14, pp.1456–1467 (2011)

[15] P. Causin, J.F. Gerbeau, F. Nobile, Added-mass ef-fect in the design of partitioned algorithms for fluid-structure problems. Comput. Methods Appl. Mech.Engrg. 194, pp. 4506–4527 (2005)

[16] R. Becker, R. Rannacher, An optimal control ap-proach to error control and mesh adaptation in finiteelement methods. Acta Numerica 2001 (A. Iserles,ed.), Cambridge University Press (2001)

[17] R. Glowinski, T.W. Pan, T.I. Hesla, J. Periaux, A fic-titious domain method for dirichlet problem and ap-plications. Comput. Meth. Appl. Mech. Engrg. 111,pp. 283–303 (1994)

[18] J. Heywood, R. Rannacher, S. Turek, Artificialboundaries and flux and pressure conditions for theincompressible Navier-Stokes equations. Int. J. Num.Meth. Fluids. 22, pp. 325–353 (1996)

[19] L. Formaggia, A. Quarteroni, A. Veneziani, Cardio-vascular Mathematics: Modeling and simulation ofthe circulatory system. Springer-Verlag, Italia, Mi-lano (2009)

[20] L. Formaggia, J.F. Gerbeau, F. Nobile, A. Quarteroni,On the Coupling of 3D and 1D Navier-Stokes equa-tions for Flow Problems in Compliant Vessels. Com-put. Meth. Appl. Mech. Engng. 191, pp. 561–582(2001)

[21] L. Formaggia, A. Moura, F. Nobile, On the stabilityof the coupling of 3D and 1D fluid-structure inter-action models for blood flow simulations. TechnicalReport MOX 94 (2006).

[22] L. Formaggia, A. Veneziani, Ch. Vergara, Flow rateboundary problems for an incompressible fluid in de-formable domains: formulations and solution meth-ods. Comput. Meth. Appl. Mech. Engrg. 199, pp.677–688 (2010)

[23] W. Bangerth, M. Grothe, Ch. Hohenegger, Finite el-ement method for time dependent scattering: nonre-flecting boundary conditionm, adaptivity, and energydecay. Comput. Meth. Appl. Mech. Engng., 193, pp.2453–2482 (2004)

[24] B. Engquist, A. Majda, Absorbing boundary condi-tions for the numerical simulation of waves. Math.Comp. 31(139), pp. 629–651 (1977)

[25] J.P. Berenger, A perfectly matched layer for the ab-sorption of electromagnetic waves. J. Comput. Phys.114(184) (1994)

[26] W. Bangerth, R. Hartmann, G. Kanschat, Differen-tial Equations Analysis Library. Technical Reference(2010) http://www.dealii.org.

[27] J. Wloka, Partielle Differentialgleichungen. B.G.Teubner, Stuttgart (1984)

[28] P.G. Ciarlet, P.A. Raviart, A mixed finite elementmethod for the biharmonic equation. MathematicalAspects of Finite Elements in Partial DifferentialEquations. (C.de Boor, Eds.), Academic Press, NewYork, pp. 125–145 (1974)

[29] T. Wick, Adaptive Finite Elements for MonolithicFluid-Structure Interaction on a Prolongated Domain:

SIMBIO 2011 8

Page 9: An Energy Absorbing Layer for the Structure Outflow ... · Cardiovascular diseases represent a major fraction of mortalities in industrialized countries. For this reason, there is

Applied to an Heart Valve Simulation, CMM May9-12, 2011, Comput. Meth. Mech., Warsaw Poland(2011)

[30] Y.C. Fung, Biodynamics: Circulation, first ed.,Springer-Verlag (1984)

[31] G.A. Holzapfel, Nonlinear Solid Mechanics, JohnWiley (2000)

[32] G.A. Holzapfel, R. W. Ogden Mechanics of Biologi-cal Tissue, Springer Heidelberg (2006)

[33] J. Mizerski, Heart Valve Modeling, Personal corre-spondance to the author (2010)

[34] S. Turek, S., Efficient solvers for incompressible flowproblems, Springer-Verlag (1999)

[35] V. Girault, P.-A. Raviart, Finite Element Methods forthe Navier-Stokes Equations, Springer, Heidelberg(1986)

[36] A.N. Brooks, T.J.R. Hughes, Streamlineupwind/Petrov-Galerkin formulations for con-vection dominated flows with particular emphasison the incompressible Navier-Stokes equations.Comput. Methods Appl. Mech. Engrg. 32(1–3), pp.199–259 (1982)

[37] M. Braack, E. Burman, V. John, G. Lube, Stabi-lized finite element methods for the generalized Os-een equations. Comput. Methods Appl. Mech. Engrg.196(4–6), pp. 853–866 (2007)

[38] T. Wick, Energy absorbing layer for the structure out-flow boundary in Fluid-structure interaction for heartvalve dynamics. submitted to a journal (2011)

[39] T. Wick, Adaptive Finite Element Approximation ofMonolithically-Coupled Fluid-Structure InteractionProblems PhD Thesis, in preparation (2011)

SIMBIO 2011 9