serial version - pds21.egloos.com

Serial version

151The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

Serial version

152The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

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153The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

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154The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

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155The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

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156The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

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157The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

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158The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

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159The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

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160The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

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161The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

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162The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

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163The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

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164The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

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165The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

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166The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

MPI

167The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

• Many examples • High-level usage of MPI • Practice

Serial version

168The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

Parallel version

169The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

Serial version

170The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

Parallel version (1/3)

171The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

Parallel version (2/3)

172The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

Parallel version (3/3)

173The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

Parallel

174The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

Most MPI programs can be run with the command mpiexec.

Parallel

175The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

Master-slave mode

176The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

http://incredible.egloos.com/3755171

Parallelizing Loops

177The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

http://incredible.egloos.com/3755171Y. Aoyama and J. Nakano, RS/6000 SP: Practical MPI Programming

Block Distribution

Cyclic Distribution

Block-Cyclic Distribution

Parameter range

178The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning

http://incredible.egloos.com/3755171Y. Aoyama and J. Nakano, RS/6000 SP: Practical MPI Programming

References• John W. Shipman, A Python 2.7 programming tutorial

• D. Beazley and B. K. Jones, Python Cookbook 3rd ed.

• Tutorialpoint, Python 3

• Richard L. Halterman, Fundamentals of Python Programming

• Brian Heinold, A Practical Introduction to Python Programming

• K. W. Smith, Cython

• Stephen Weston, Parallel Computing in Python using mpi4py

• Lisandro Dalcin, MPI for Python

• Konrad Hinsen, Optimizing and Interfacing with Cython

• Stéfan van der Walt, The Quest for Speed: An Introduction to Cython

• http://cs231n.github.io/python-numpy-tutorial/

• https://code.tutsplus.com/tutorials/speeding-python-with-cython--cms-29557

• https://docs.scipy.org/doc/numpy/user/quickstart.html

• http://book.pythontips.com/en/latest/python_c_extension.html

• https://notmatthancock.github.io/2017/02/10/calling-fortran-from-python.html

• Y. Aoyama and J. Nakano, RS/6000 SP: Practical MPI Programming

• https://en.wikibooks.org/wiki/A_Beginner%27s_Python_Tutorial/Classes

179The 9th KIAS CAC Summer School on Scientific Computing and Machine Learning