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THE INSTITUTE FOR GENOMICS AND MULTISCALE BIOLOGY: CONFIDENTIAL

May 23, 2013

A Systems View of Alzheimer’s Disease

Icahn Institute: Stay connected with us!

@multiscalebio

Considering the digital universe of data to better diagnose and treat patients

Integrating data to build predictive models of living systems

( - DNA, - RNA, - Protein, - Metabolite)

Cell 153: 707-720 (2013)

PACIFIC BIOSCIENCES™ CONFIDENTIAL

Networks can be linked to human forms of disease to help

motivate relevance for human treatments

Isolate DNA and

genotype

Genotype

Isolate RNA and

sequence or profile

Atherosclerotic Arterial wall

Atherosclerosis- Free Artery Wall

(IMA)

Carotid and coronary Lesion Liver

Macrophages*

Blood monocytes

Omental and Mediastinal Visceral Fat

Skeletal Muscle Subcutaneous Fat

3 different parts of brain

AND

Thousands of individuals now genotyped and profiled

PACIFIC BIOSCIENCES™ CONFIDENTIAL

Connections between diseases and tissues: IBD network

driving Alzheimer’s

Building networks from 500 prefrontal cortex samples

PACIFIC BIOSCIENCES™ CONFIDENTIAL

Constructing the co-expression networks

“Normal” versus LOAD Networks

Constructing predictive network models for AD

(Created with iCAVE from Gumus Lab, 2013)

(Created with iCAVE from Gumus Lab, 2013)

Causal probabilistic network relating to a PFC module correlating with multiple LOAD

clinical covariates, enriched for immune function/pathways related to microglia activity

Two papers in NEJM today

reporting on rare variants in

TREM2 associate with LOAD

We identified TYROBP

as a key regulator of

this network

CD33, MS4A4A,

MS4A6A

(from LOAD

GWAS)

The microglia pathogen phagocytosis pathway

TREM2 signals directly via TYROBP

Core disease modules harbor pluripotent drug targets

Acknowledgements

15

Mount Sinai PacBio Cornell CSHL

Ali Bashir

Bobby Sebra

Joel Dudley

Andrew Kasarskis

Milind Mahajan

Gintaras Deikus

Jun Zhu

Bin Zhang

Rui Chang

Michael Linderman

Gaurav Pandey

Bojan Losic

Omar Jabado

Glenn Farrell

Jason Chin

Yan Gao

Greg Khitrov

Frank Boellmann

Ellen Paxinos

David Rank

Paul Peluso

Edwin Hauw

Chris Mason

Roger Altman

Russell Durrett

Richard McCombie

Eric Antoniou

Patricia Mocombe

New York Genome Center Sage Bionetworks University of Bonn Icelandic Heart

Association Bob Darnell Stephen Friend

Chris Gaiteri

Harald Neumann

Liviu-Gabriel Bodea

Valur Emilsson

Stay connected with us! @multiscalebio