open notebook science - unm biomed symposium edition

Post on 21-Dec-2014

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Scientific information is published in peer reviewed journals as a complete account. Unfortunately there is nothing complete about the process. Frequently intermediate and supplementary experimental data is excluded, methods are not nearly detailed enough, and results are manipulated for appearance. Open notebook science aims to be a complete account of the scientific process: from ideas and planning, to experimental setup and protocol design, all the way through data interpretation and commentary. Here I talk about tools to create and support an open notebook, effective use of the medium, and how social interaction creates a community using examples from my own open notebook for research.

TRANSCRIPT

Open Notebook Science:Research in Real-Time

by anthony salvagnoresearch.iheartanthony.com

how is science traditionally

carried out?

closed & isolated

and the outcome...

ideas results

...is peer review publication

writingformattingacceptance

inaccessiblelimited

peer review is designed to weed outmisinformation...

...but now there are so many journalsscientists will eventually get published.

What is the alternative?

open science

open access

data methods

reinventingdiscovery

outreach

publicaccess

citizenscience

open notebook science

and that record includes...

...the practice of making the entire primary record of a research project publicly available online as it is recorded.

project inception,

plannning,

protocols,

equipment,

data,

tobacco seed growth in heavy watervia google docs and figshare

and conclusions.

what are the

Key aspects of

Open notebook science?

communication

provenance

repeatability

transparency

Why do open notebook

science?

real-timepeer review

andcollaboration

warm fuzzies(outreach)

lots ofpublications

open notebookscience

measurableimpact

are there drawbacks?

can you still publish in a journal?-YES!

-perhaps...will my notebook be around when I’m dead?

-small but expanding communityhow many people are doing this?

-at first no, but over time contributions will come

would anyone even read my notebookand comment in it?

How do we take open

notebook science

to the next level?

require open access for funding

teach students the benefits of ons

show professors that going open is not a sacrifice

find and propogate ons successstories

reu/igert training specifically foropen science - proposal pending!

The End

busting science openiheartanthony, do you?

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