open annotation in the charme project for the i annotate conference

Open Annotation in The CHARMe Project

Raquel Alegre

I Annotate 2014

3rd and 4th April 2014 – San Francisco

Scientific S/W Engineer

University of Reading, UK

Summary

• Introduction to CHARMe

Summary

• Introduction to CHARMe

• What’s a climate dataset?

Summary

• Introduction to CHARMe

• What’s a climate dataset? • Use of Open Annotation in CHARMe

Summary

• Introduction to CHARMe

• What’s a climate dataset? • Use of Open Annotation in CHARMe

• CHARMe’s basic use case

Summary

• Introduction to CHARMe

• What’s a climate dataset? • Use of Open Annotation in CHARMe

• CHARMe’s basic use case

• CHARMe’s advanced tools

Summary

Introduction to CHARMe

Introduction to CHARMe

Post-fact annotations

Introduction to CHARMe

Post-fact annotations

External events

Introduction to CHARMe

Post-fact annotations

External events

Data Provenance

Introduction to CHARMe

Post-fact annotations

External events

Data Provenance

User feedback

Introduction to CHARMe

Post-fact annotations

External events

Data Provenance

User feedback

Data policy

Introduction to CHARMe

Post-fact annotations

External events

Data Provenance

User feedback

Data policy

Results of assessments

Introduction to CHARMe

Post-fact annotations

External events

Data Provenance

User feedback

Data policy

Results of assessments

CHARMe

Post-fact annotations

External events

Data Provenance

User feedback

Data policy

Results of assessments

CHARMe

Introduction to CHARMe

Post-fact annotations

External events

Data Provenance

User feedback

Data policy

Results of assessments

Sharing knowledge about Climate Data to help users judge fitness-for-purpose

CHARMe

Introduction to CHARMe

CHARMe

Annotation

Metadata

Climate

Dataset

Overlapping volcanic eruption

I recently published a paper about this

dataset

CHARMe basic OA use case

Does anyone know about other related

datasets? http://www.someURL.com/dataset

CHARMe

Annotation

Metadata

Climate

Dataset

Overlapping volcanic eruption

I recently published a paper about this

dataset

CHARMe basic OA use case

Does anyone know about other related

datasets? http://www.someURL.com/dataset

W3C OA is a natural fit for CHARMe…

CHARMe

Annotation

Metadata

Climate

Dataset

Overlapping volcanic eruption

I recently published a paper about this

dataset

CHARMe basic OA use case

Does anyone know about other related

datasets? http://www.someURL.com/dataset

W3C OA is a natural fit for CHARMe… …plus it lets us record motivation, tag, have multiple targets.

CHARMe node

CHARMe node

CHARMe node

3rd party system

Data provider website

• CHARMe will create connected repositories of commentary information

• Annotations stored as triples in “CHARMe nodes”

• Information can be read and entered through websites or web services

CHARMe basic OA use case

CHARMe basic OA use case

CHARMe basic OA use case

CHARMe basic OA use case

CHARMe basic OA use case

What's a Climate Dataset?

Measurement < 1999 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014

HPLC

PABS

CDOM

SPM

POC - CHN

Chla(fluoro)

Primary production

FRRF

Ed, Lu

ac9

bb6

VSF,bb3

Above water RSR

PAR

Transmissometer

Flow cytometry

Coulter Counter

Phytoplankton counts

CTD

What's a Climate Dataset?

Measurement < 1999 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014

HPLC

PABS

CDOM

SPM

POC - CHN

Chla(fluoro)

Primary production

FRRF

Ed, Lu

ac9

bb6

VSF,bb3

Above water RSR

PAR

Transmissometer

Flow cytometry

Coulter Counter

Phytoplankton counts

CTD

What's a Climate Dataset?

Measurement < 1999 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014

HPLC

PABS

CDOM

SPM

POC - CHN

Chla(fluoro)

Primary production

FRRF

Ed, Lu

ac9

bb6

VSF,bb3

Above water RSR

PAR

Transmissometer

Flow cytometry

Coulter Counter

Phytoplankton counts

CTD

What's a Climate Dataset?

Measurement < 1999 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014

HPLC

PABS

CDOM

SPM

POC - CHN

Chla(fluoro)

Primary production

FRRF

Ed, Lu

ac9

bb6

VSF,bb3

Above water RSR

PAR

Transmissometer

Flow cytometry

Coulter Counter

Phytoplankton counts

CTD

What's a Climate Dataset?

Measurement < 1999 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014

HPLC

PABS

CDOM

SPM

POC - CHN

Chla(fluoro)

Primary production

FRRF

Ed, Lu

ac9

bb6

VSF,bb3

Above water RSR

PAR

Transmissometer

Flow cytometry

Coulter Counter

Phytoplankton counts

CTD

What's a Climate Dataset?

http://svs.gsfc.nasa.gov/vis/a000000/a003800/a003821/flow_flat_sst_2048x1024.mp4

Some advanced use cases...

Climate data users discuss about data:

Some advanced use cases...

Climate data users discuss about data: - Intercompare datasets

- Research on events timing

- Focus on specific areas of the world

Some advanced use cases...

Plankton bloom: “when did it start?”

Some advanced use cases...

Plankton bloom: “when did it start?”

Sediment from rivers: “Where did it come from?”

Some advanced use cases...

Plankton bloom: “when did it start?”

Sediment from rivers: “Where did it come from?”

Reflective bloom: “or is it an image artefact??”

Some advanced use cases...

Plankton bloom: “when did it start?”

Sediment from rivers: “Where did it come from?”

Reflective bloom: “or is it an image artefact??”

Plankton tracing currents: “how deep?”

Some advanced use cases...

Plankton bloom: “when did it start?”

Sediment from rivers: “Where did it come from?”

Reflective bloom: “or is it an image artefact??”

Plankton tracing currents: “how deep?”

Clear blue ocean: “isn’t it nice?”

Some advanced use cases...

CHARMe advanced use cases

Climate data often comes in 2D, 3D and 4D formats

How to refer to a specific subset of these?

OA SVG Selectors are not enough

CHARMe advanced tools

CHARMe advanced tools

CHARMe advanced tools

CHARMe advanced tools

Climate Dataset

Dataset’s

subset

CHARMe

Annotation

Metadata

Let’s update our report.

Could be sediment.

Why these high values?

Subset

Selector

Geographic

Selector

Temporal

Selector

hasTemporalSelector

hasGeographicSelector

CHARMe is all about Climate Data, but its use cases are also applicable to many other fields. Even Art!

Conclusions

CHARMe is all about Climate Data, but its use cases are also applicable to many other fields. Even Art! Previous efforts e.g.: MapHub.

Conclusions

CHARMe is all about Climate Data, but its use cases are also applicable to many other fields. Even Art! Previous efforts e.g.: MapHub. A few questions:

Conclusions

CHARMe is all about Climate Data, but its use cases are also applicable to many other fields. Even Art! Previous efforts e.g.: MapHub. A few questions: How to annotate 4D data?

Conclusions

CHARMe is all about Climate Data, but its use cases are also applicable to many other fields. Even Art! Previous efforts e.g.: MapHub. A few questions: How to annotate 4D data? Is it possible to standardize this?

Conclusions

CHARMe is all about Climate Data, but its use cases are also applicable to many other fields. Even Art! Previous efforts e.g.: MapHub. A few questions: How to annotate 4D data? Is it possible to standardize this? What RDF ontologies to use?

Conclusions

CHARMe is all about Climate Data, but its use cases are also applicable to many other fields. Even Art! Previous efforts e.g.: MapHub. A few questions: How to annotate 4D data? Is it possible to standardize this? What RDF ontologies to use? Let’s discuss later!

Conclusions