cluster sorting, analysis and 3d-display for the mapping of the dragonfly’s neuro- network...

Cluster Sorting, Cluster Sorting, Analysis and 3D-Analysis and 3D-

DisplayDisplayFor the Mapping of the For the Mapping of the

Dragonfly’s Neuro-NetworkDragonfly’s Neuro-NetworkAdvisor: Prof. HannayAdvisor: Prof. Hannay

Client: Prof. Olberg (BiologyClient: Prof. Olberg (Biology))

AgendaAgenda

BackgroundBackground ProblemProblem SolutionSolution

BackgroundBackground

Learning more about DragonfliesLearning more about Dragonflies Current ProcedureCurrent Procedure

ProblemProblem

How can I How can I interpret this datainterpret this data

Current SolutionsCurrent Solutions

My SolutionMy Solution

Develop a program that sorts, Develop a program that sorts, analyses, and displays data.analyses, and displays data.

PrioritiesPriorities

Good sorting algorithmGood sorting algorithm Good graphical displaysGood graphical displays Meets requirements of clientMeets requirements of client Robustness, ModularityRobustness, Modularity Completed programCompleted program

JClusterJCluster

Written in C++Written in C++ Uses OpenGL Uses OpenGL

library for 3D library for 3D graphicsgraphics

Clustering Clustering AlgorithmAlgorithm

Why C++Why C++

Documented as still the “faster” Documented as still the “faster” language language

Allows for Object-Oriented designAllows for Object-Oriented design Works very well with OpenGL Works very well with OpenGL

graphicsgraphics

OpenGLOpenGL

Widely used graphics libraryWidely used graphics library Allows for 3-dimensional graphics Allows for 3-dimensional graphics

displaydisplay Language very similar to C++Language very similar to C++

Program DesignProgram Design

4 Main Parts: GUI, Algorithm (Back-4 Main Parts: GUI, Algorithm (Back-End), I/O, and GraphicsEnd), I/O, and Graphics

GUIGUI

Created using Created using MFC as part of MFC as part of Visual C++Visual C++

One of many One of many potential designspotential designs

AlgorithmAlgorithm

Euclidean Distances usedEuclidean Distances used Variables StandardizedVariables Standardized Admittance based on centroid Admittance based on centroid

distancedistance Variable Reduction on high-Variable Reduction on high-

dimensional graphsdimensional graphs

Back-End ProcedureBack-End Procedure

Data comes in as streams on Data comes in as streams on numbersnumbers

Converted into Peak classesConverted into Peak classes Peak variables are given valuesPeak variables are given values Peaks are sorted into clustersPeaks are sorted into clusters

GraphicsGraphics

Clusters of Peaks Clusters of Peaks are sent to are sent to graphics objectgraphics object

Clusters are color Clusters are color codedcoded

Window is 360Window is 360o o

rotation around X rotation around X and Y-axisand Y-axis

Log FileLog File

File gives text representation of dataFile gives text representation of data Identifies each cluster and the Identifies each cluster and the

number of peaksnumber of peaks Average values within clustersAverage values within clusters Factors taken into considerationFactors taken into consideration Date and TimeDate and Time

What does JCluster do for What does JCluster do for me?me?

Cluster SortingCluster Sorting Multi-Variant AnalysisMulti-Variant Analysis 3-Dimensional and Textural 3-Dimensional and Textural

representation of informationrepresentation of information

ProblemsProblems

Finding GUI Finding GUI librarylibrary

Finding right Finding right algorithmalgorithm

DesignDesign Transition to C++Transition to C++

What Have I LearnedWhat Have I Learned

More proficient at C++More proficient at C++ Greater sense of “larger”-scale Greater sense of “larger”-scale

programsprograms Better understanding of algorithmsBetter understanding of algorithms Interaction with clientInteraction with client Time Management for long-term Time Management for long-term

projectsprojects

What’s Next?What’s Next?

List of add-on’sList of add-on’s Looking for better Looking for better

GUI libraryGUI library User manual and User manual and

help pageshelp pages

Any Questions?Any Questions?