canreg5 webinar 5: data analysis...2012/11/13  · canreg5 webinar 5: data analysis morten ervik...

CanReg5 Webinar 5: Data Analysis

Morten Ervik

International Agency for Research on Cancer,Lyon, France

Lyon, France, 22 October 2012

Outline

Frequencies by year

Population Dataset Editor

Table Builder

Export/Report

Live Demo

Summary

Outline

Frequencies by year

Population Dataset Editor

Table Builder

Export/Report

Live Demo

Summary

Frequencies by year

I A tool to count the cases in the database.I Filter the cases using simple statements

I Boolean logicI Subset of the SQL languageI Filter wizard to help build filters

I Stratify the results:I by any variableI by as many variables you need

I Results can be written to files of standard format for postprocessing in general spreadsheets (Excel, Calc,Numbers), or other tools.

Example: Cases by year

Example: Stomach cancers in 2000 by morphology

Example: Sources in one year

Example: One source over the years

Outline

Frequencies by year

Population Dataset Editor

Table Builder

Export/Report

Live Demo

Summary

Population Dataset Editor

I Lets you add denominators to your databaseI You can store as many as you want:

I By yearI Sub-populations (relevant cases automatically picked from

the database.)

I Support most age group breakdownsI Editor supports copy and paste to and from general

spreadsheets like Excel

Enter details

Enter data

Preview the population pyramid to visually check forerrors

Outline

Frequencies by year

Population Dataset Editor

Table Builder

Export/Report

Live Demo

Summary

Table builder

I Generate “ready to print” tables.I A wide range of different types of tables, for example:

I Incidence tables - rates and number of casesI Age specific incidence curvesI Figures of top 10 cancers by sexI Figures of cases by ageI Population pyramids

I A wide range of output formats:I Scalable formats (PDF, PS, SVG)I Image formats (PNG, etc.)

I Some tables calls transparently R:I Advanced users can write their own R programs that can

be called directly from CanReg5.

Choose table type

Choose period

Choose denominators

Choose file format

Results

Outline

Frequencies by year

Population Dataset Editor

Table Builder

Export/Report

Live Demo

Summary

Export/Report

I Export data for further work in other tools, or provide tocollaborators

I individual casesI only selected variables (or all)I choose to export codes and/or labels/descriptionsI filter cases as you wishI Character separated files compatible with general

spreadsheets, like Excel.

Export/Report

Outline

Frequencies by year

Population Dataset Editor

Table Builder

Export/Report

Live Demo

Summary

Live Demo

Outline

Frequencies by year

Population Dataset Editor

Table Builder

Export/Report

Live Demo

Summary

Summary

I Frequencies by yearI stratified by any variable

I Population Dataset EditorI Table builder

I for “ready to print” tables.I a multitude of file formats for different uses.

I Export/reportI For further analysis in other programs

Summary

I Frequencies by yearI stratified by any variable

I Population Dataset EditorI Table builder

I for “ready to print” tables.I a multitude of file formats for different uses.

I Export/reportI For further analysis in other programs

Summary

I Frequencies by yearI stratified by any variable

I Population Dataset EditorI Table builder

I for “ready to print” tables.I a multitude of file formats for different uses.

I Export/reportI For further analysis in other programs

Summary

I Frequencies by yearI stratified by any variable

I Population Dataset EditorI Table builder

I for “ready to print” tables.I a multitude of file formats for different uses.

I Export/reportI For further analysis in other programs

Future webinars

I Next webinar:I Sometime during the first half of December.

I Theme: Customization, etc.I Please send suggestions to ervikm@iarc.fr to propose

additional topics.

I Slides and videos will be put online at the GICR website;http://gicr.iarc.fr

For Further Information I

Ervik, MortenCanReg5 - the handbook2009-2012Available online at the IACR web page under software

CanReg5 web pagehttp://www.iacr.com.fr/canreg5.htm

@canreg twitter feedhttp://twitter.com/canreg