boston, massachusetts. usa - chest imaging platform · a chest imaging platform slicer extension...
Post on 11-May-2020
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ParenchymaSubtypeTrainingAChestImagingPlatformSlicerExtensionmodule
AppliedChestImagingLaboratoryBoston,Massachusetts.USA
AppliedChestImagingLaboratory
• Goal:TheParenchymaSubtypeTrainingmoduleisaneasywaytolabeldifferentlungstructures.• Eachfiducialstoresinformationofthetypeandsubtypeofstructureaswellastheregionwhereisplaced,andwhetherthereisornotanartifactontheimage.• Thelistoffiducialscouldbeexportedina.cvs fileeasytomanageforyourstudy.
Overview
SlicerChe
stIm
agingPlatform
–Mod
uleNam
e
AppliedChestImagingLaboratory
ParenchymaSubtypeTraining
SlicerChe
stIm
agingPlatform
–Mod
uleNam
e
1- SelectaninputCTimage
AppliedChestImagingLaboratory
ParenchymaSubtypeTraining
SlicerChe
stIm
agingPlatform
–Mod
uleNam
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2- SelectthedesiredparenchymaTip:TheParenchymasubtypelistwillchangedependingontheselectedtype.
AppliedChestImagingLaboratory
ParenchymaSubtypeTraining
SlicerChe
stIm
agingPlatform
–Mod
uleNam
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3- Ifdesired,selectthesubtypeofparenchyma.Tip:“Any”isselectedbydefault.
AppliedChestImagingLaboratory
ParenchymaSubtypeTraining
SlicerChe
stIm
agingPlatform
–Mod
uleNam
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3- Selecttheregionwherethemarkupisgoingtobeplaced.Tip:“Any”isselectedbydefault.
AppliedChestImagingLaboratory
ParenchymaSubtypeTraining
SlicerChe
stIm
agingPlatform
–Mod
uleNam
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4- Selectwhetherthereisanartifactontheimageornot.
AppliedChestImagingLaboratory
ParenchymaSubtypeTraining
SlicerChe
stIm
agingPlatform
–Mod
uleNam
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5- Placefiducialonanyoftheviews.Tip:makesurethatthefiducialplacerisselected.
AppliedChestImagingLaboratory
ParenchymaSubtypeTraining
SlicerChe
stIm
agingPlatform
–Mod
uleNam
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6- selectthePathtosavethemarkup.
7- Savemarkupsona.xmlfile.
Ifdesired,Loadapreviouslysavedfileofmarkups.
Click“removelastfiducial”toremovethelastplacedfiducial.
AppliedChestImagingLaboratory
• TheParenchymalSubtypeTrainingmoduleispartoftheChestImagingPlatformextensionfor3DSlicer(www.chestimagingplatform.org)
• ThisworkisfundedbytheNationalHeart,Lung,AndBloodInstituteoftheNationalInstitutesofHealthunderAwardNumberR01HL116931.ThecontentissolelytheresponsibilityoftheauthorsanddoesnotnecessarilyrepresenttheofficialviewsoftheNationalInstitutesofHealth.
• Contributors:• Raúl SanJoséEstepar• AppliedChestImagingLaboratory• BrighamandWomen'sHospital• HarvardMedicalSchool
ParenchymaSubtypeTraining
SlicerChe
stIm
agingPlatform
–ParenchymalAnalysis
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