alien species profile, island biology conference, azores 2016

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v (ASP): a streamlined workflow for collaborative authoring, peer- review and scholarly publication, serving the IUCN ISSG activity Lyubomir Penev 1,2 , Pavel Stoev 1,2 , Teodor Georgiev 1 , Viktor Senderov 1,2 , Shyama Pagad 3 , Piero Genovesi 4 1 Bulgarian Academy of Sciences & 2 Pensoft Publishers, Sofia, Bulgaria 3 IUCN SSC Invasive Species Specialist Group, University of Auckland, New Zealand 4 IUCN SSC Invasive Species Specialist Group, ISPRA Institute for Environmental Protection and Research, Rome, Italy Island Biology Conference, Terceira, Azores, July 2016

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Page 1: Alien Species Profile, Island Biology Conference, Azores 2016

v

Alien Species Profile (ASP): a streamlined workflow for collaborative

authoring, peer-review and scholarly publication, serving the IUCN ISSG activity

Lyubomir Penev1,2, Pavel Stoev1,2, Teodor Georgiev1, Viktor Senderov1,2, Shyama Pagad3, Piero Genovesi4

1Bulgarian Academy of Sciences & 2Pensoft Publishers, Sofia, Bulgaria3IUCN SSC Invasive Species Specialist Group, University of Auckland, New Zealand

4IUCN SSC Invasive Species Specialist Group, ISPRA Institute for Environmental Protection and Research, Rome, Italy

Island Biology Conference, Terceira, Azores, July 2016

Page 2: Alien Species Profile, Island Biology Conference, Azores 2016

• Data import• Authoring• Peer-review• Publication• Dissemination

+

Next-Gen taxonomy requires Next-Gen publishing

All within a single online collaborative platform, for the first time

Next-Gen science requires Next-Gen publishing!Next-Gen science requires Next-Gen publishing!

Page 3: Alien Species Profile, Island Biology Conference, Azores 2016

ARPHA Journal Publishing Platform

Page 4: Alien Species Profile, Island Biology Conference, Azores 2016

Two journal publishing workflows

Page 5: Alien Species Profile, Island Biology Conference, Azores 2016

The IUCN GISD Species Page

Page 6: Alien Species Profile, Island Biology Conference, Azores 2016

The IUCN GISD Species Page

Page 7: Alien Species Profile, Island Biology Conference, Azores 2016

How to turn the GISD Species Page into a Scholarly Publication?

Page 8: Alien Species Profile, Island Biology Conference, Azores 2016

The Alien Species Profile is compliant to the IUCN GISD Species Page

Page 9: Alien Species Profile, Island Biology Conference, Azores 2016

What You Write is What You Get (WYW-WYG)

Page 10: Alien Species Profile, Island Biology Conference, Azores 2016

Why do this?A permanent scientific record for Species Pages in a journal Citation and creditCollaborative peer-review and assessmentPowerful tool for expert engagement (e.g. taxonomists)Extended media-rich descriptions of species of conservation importancePublication in both human- (semantic HTML, PDF) and machine-readable (XML) format Article- and Sub-Article-Level MetricsStreamlined continuous update of IUCN species profiles via ARPHADissemination via the journal industry networksPermanent archiving in PubMedCentral, Zenodo and CLOCKS

Page 11: Alien Species Profile, Island Biology Conference, Azores 2016

Getting started – Step 1

Page 12: Alien Species Profile, Island Biology Conference, Azores 2016

Getting started – Step 2

Page 13: Alien Species Profile, Island Biology Conference, Azores 2016

Getting started – Step 3

Page 14: Alien Species Profile, Island Biology Conference, Azores 2016

Invite co-authors

Page 15: Alien Species Profile, Island Biology Conference, Azores 2016

Invite pre-submission reviewers

Page 16: Alien Species Profile, Island Biology Conference, Azores 2016

Import data into manuscript

Page 17: Alien Species Profile, Island Biology Conference, Azores 2016

Import data into manuscript

Page 18: Alien Species Profile, Island Biology Conference, Azores 2016

Insert citations of literature, figs, tabs

Page 19: Alien Species Profile, Island Biology Conference, Azores 2016

Search and import references online

Page 20: Alien Species Profile, Island Biology Conference, Azores 2016

Import a figure

Page 21: Alien Species Profile, Island Biology Conference, Azores 2016

Cited figures placed automatically

Page 22: Alien Species Profile, Island Biology Conference, Azores 2016

Compose plates

Page 23: Alien Species Profile, Island Biology Conference, Azores 2016

Write/Edit in IUCN-compliant interface

Page 24: Alien Species Profile, Island Biology Conference, Azores 2016

Embedded copyeditor

Page 25: Alien Species Profile, Island Biology Conference, Azores 2016

Automated technical check

Page 26: Alien Species Profile, Island Biology Conference, Azores 2016

Work with your coauthors & peers online

Page 27: Alien Species Profile, Island Biology Conference, Azores 2016

Consolidated reviews for editors

Page 28: Alien Species Profile, Island Biology Conference, Azores 2016

This is how data look like in the published paper

Page 29: Alien Species Profile, Island Biology Conference, Azores 2016

Taxon names and their usages

Page 30: Alien Species Profile, Island Biology Conference, Azores 2016

Taxon profile in real timeOnline taxon profiles in real time

Page 31: Alien Species Profile, Island Biology Conference, Azores 2016

Online taxon profiles in real time

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Usage metricsEarly warning, dissemination & PR critically important!

Page 33: Alien Species Profile, Island Biology Conference, Azores 2016

Usage metricsReaching science journalists & general

public

Page 34: Alien Species Profile, Island Biology Conference, Azores 2016

Usage metricsContent goes to mass media (BBC, NG, NYT,

Gardian etc.) on the day of publication

Page 35: Alien Species Profile, Island Biology Conference, Azores 2016

Usage metricsContent goes to mass media (BBC, NG, NYT,

Gardian etc.) on the day of publication

Page 36: Alien Species Profile, Island Biology Conference, Azores 2016

Usage metricsArticle & Sub-Article-Level Usage

Page 37: Alien Species Profile, Island Biology Conference, Azores 2016

Post-publication review

Page 38: Alien Species Profile, Island Biology Conference, Azores 2016

Update your article anytime

Update your article

Page 39: Alien Species Profile, Island Biology Conference, Azores 2016

PDF and XML publishing formats

<taxon-name-part taxon-name-part-type="genus">Nixonia</taxon-name-part>   <taxon-name-part taxon-name-part-type="species">masneri</taxon-name-part>   </taxon-name>- <taxon-author>  <string-name>van Noort & Johnson</string-name>   </taxon-author>  <taxon-status>sp. n.</taxon-status>   <xref>Figures 1A-F</xref>

Page 40: Alien Species Profile, Island Biology Conference, Azores 2016

This is how it started

Descriptions

Images

Occurrences

Title

Metadata

From BDJ to IUCN via XML

Page 41: Alien Species Profile, Island Biology Conference, Azores 2016

European Commission: EUBON FP7 ProjectEuropean Commission: PhD Financed through the EU Marie-Sklodovska-Curie Program Grant Agreement Nr. 642241IUCN ISSG Group Pensoft developers teamSlavena Peneva (drawings and design)

Our sincere thanks are due to: