a chemical proteomics approach toward identification of human abscisic acid-binding proteins

1
reliable determination of the dissociation constant (KD) is typically limited to the range 100 mM > KD > 1 nM. Nevertheless, interactions characterised by a higher or lower KD can be assessed indirectly, provided that a suitable com- petitive ligand is available whose KD falls within the directly accessible win- dow. Unfortunately, the established competitive ITC assay requires that the high-affinity ligand be soluble at high concentrations in aqueous buffer contain- ing only minimal amounts of organic solvent. This poses serious problems when studying protein binding of small-molecule ligands taken from com- pound libraries dissolved in organic solvents, as is usually the case during screening or drug development. Here we introduce a new ITC competition assay that overcomes this limitation, thus allowing for a precise thermodynamic description of high- and low-affinity protein-ligand interactions involving poorly water-soluble compounds. We dis- cuss the theoretical background of the approach and demonstrate some practi- cal applications using examples of both high- and low-affinity protein-ligand interactions. 2362-Pos Board B132 A Chemical Proteomics Approach toward Identification of Human Absci- sic Acid-Binding Proteins Olesya A. Kharenko, Devin Polichuk, Allison Didychuk, Michele C. Loewen. Plant Biotechnology Institute, Saskatoon, SK, Canada. Abscisic acid (ABA) is a plant hormone present in all plant-based food and has no known toxic effects. Recently, ABA was shown to modulate various aspects of human disease states in model systems. Presumably, ABA mediates its re- sponses through binding to receptors of as yet unknown identity. Using an ABA mimetic photoaffinity probe applied in a chemical proteomics approach we identified the 78 kilodalton glucose regulated protein 78 (GRP78; HSPA5; BiP) and 70 kilodalton heat shock protein (HSP70-2) as putative hu- man ABA-binding proteins. Both of these proteins have intracellular roles in protein folding and are also known to be involved in extracellular receptor ac- tivities at the cell membrane. Characterization of the binding of ABA to the proteins of the heat shock protein 70 (HSP70) family, HSP70-1 and GRP78 was carried out by surface plasmon resonance spectroscopy (SPR) in the pres- ence and absence of co-chaperone, DnaJ. DnaJ is known to control substrate binding of heat shock proteins. The binding affinities of both GRP78 and Hsp70-1 for ABA were found to be in the mM range and increased dramatically in the presence of the co-chaperone. The lack of SPR signal upon injection of structurally but not functionally related molecule trans-cinnamic acid (CA), highlights the specificity of the ABA interaction with GRP78. Interestingly, ABA had differential effects on modulation of the ATPase activity of these two HSP70 family proteins. Overall this work highlights a novel and potentially important interaction between a dietary plant hormone and human heat shock proteins. Determination of the biological relevance of this ABA/HSP interac- tion is currently underway. 2363-Pos Board B133 Investigation of the Influence Glycosaminoglycan Sulfation on the Interac- tion with Interleukin-8 by Fluorescence and Solution NMR Spectroscopy Annelie Pichert 1 , Sergey A. Samsonov 2 , Karoline Norsieck 3 , Annette G. Beck-Sickinger 3 , Marı ´a T. Pisabarro 2 , Daniel Huster 1 . 1 Insitute of Medical Physics and Biophysics, University of Leipzig, Leipzig, Germany, 2 BIOTEC, Technical University of Dresden, Dresden, Germany, 3 Institute of Biochemistry, University of Leipzig, Leipzig, Germany. The interactions between glycosaminoglycans (GAGs), important components of the extracellular matrix (ECM), and proteins such as growth factors and che- mokines play a critical role in cellular regulation processes. Previous work on the chemokine Interleukin-8 (IL-8) has focused on its interaction with heparin and heparan sulfate, which regulate chemokine function. Nevertheless, low or non sulfated GAGs such as hyaluronan (HA), dermatan sulfate (DS) and chon- droitin sulfate (CS), also contained in the extracellular matrix, have so far not been studied with regard to their distinct binding properties towards IL-8. In this work, we combine fluorescence as well as solution NMR experiments to study the recognition properties of GAG hexasaccharides, including HA, CS, DS and heparin, to IL-8. Using 1H-15N HSQC spectroscopy of IL-8 in the pres- ence of varying GAG concentrations, the interacting amino acid could be iden- tified. Furthermore to observe lysine side chains, a reductive methylation with [13C]-formaldehyde, adding two methyl groups to the ε-NH3þ of lysines with- out altering the positive charge, was performed. In order to resolve the signals from the lysine side chains, 1H-13C HSQC spectra were recorded and the in- fluence of the GAGs was tested again. The results show that an increase in GAG sulfation enhances the strength of the binding to the protein. In addition, in cases of equal degree of sulfation the po- sition of the sulfate group plays a crucial role sugessting that interactions be- tween proteins and GAGs are not purely electrostatically driven and steric forces as well as contributions from hydrogen bonds have to be considered. These observations were also confirmed by molecular docking and dynamic simulations providing a structural picture of the interaction of IL-8 with various GAGs. 2364-Pos Board B134 Fluorescent, Reagentless Biosensors for Phosphate: Altering Properties, Expanding Usefulness Simone Kunzelmann, Annie Nofer, Colin Davis, Martin R. Webb. MRC National Institute for Medical Research, London, United Kingdom. Two forms of biosensor for inorganic phosphate (P i ) have been developed, based on the phosphate binding protein of Escherichia coli, and are now widely used for time-resolved measurements of enzymes that produce P i . One form is an adduct with a single coumarin fluorophore. For the second version, two cys- teine mutations were introduced and labeled with a rhodamine. When physi- cally close to each other and appropriately orientated, two rhodamine dyes can interact to form a non-covalent dimer. In this state they have little or no fluorescence, unlike the high fluorescence intensity of monomeric rhodamine. The labeling sites were so placed that the distance and orientation between the rhodamines changes with the conformation change associated with P i binding. This movement alters the extent of interaction between rhodamines and gives a large fluorescence increase as P i binds. In both these forms, P i binds rapidly and tightly, making them good probes for rapid reaction assays, where all P i can be bound to the biosensor: that is, the probe must be at least stoichiometric with the P i . The rhodamine version has a large advantage over coumarin in terms of sensitivity and photobleaching. However, to make the probe more useful for different assay formats, such as high-throughput, the biosensor would best be used sub-stoichiometrically. This is more efficient in terms of usage amounts and has the potential of measuring over a wider range of P i concentrations. To achieve this, several strategies were examined to locate mutations on this two domain protein to weaken the P i binding while maintaining the fluores- cence response. Heme Proteins 2365-Pos Board B135 Porphyrin-Mediated Photoinduced Conformational Changes to Human Serum Albumin at Physiological and Acidic pH Sarah C. Rozinek, Lorenzo Brancaleon. University of Texas at San Antonio, San Antonio, TX, USA. Many of the biological and non-biological roles and uses of protoporphyrin-IX (PPIX) depend on its ability to bind large macromolecules such as human se- rum albumin (HSA). HSA is relevant to both biomedical and technological applications of PPIX (both free-base and metal), and its binding site for PPIX-derivatives is well established. Once bound, Heme (FePPIX) has be shown capable of transiently bestowing altered ligand-binding and pseudo- enzymatic properties to HSA that could be linked to biological functions. The irradiation of PPIX non-covalently bound to Beta-Lactoglobulin (BLG) is known to produce protein conformational changes that appear to be pH- dependent due to BLG’s intrinsic conformational transitions. These processes have not been extensively studied in non-physiological pH conditions for FePPIX or PPIX bound to HSA. This study implemented a combination of op- tical methods and computational simulations to compare the binding character- istics of hemin and PPIX to HSA as well as examine the structural effects of low-dose irradiation of the ligand on the protein at different pH. Spectroscopic data suggests that irradiation of the porphyrins’ Soret band, when bound to HSA, is capable of modifying the globular protein structure by direct charge transfer mechanisms at both physiological and acidic pH conformations. Com- putational docking simulations predict lower free energy of binding for PPIX than for heme. 2366-Pos Board B136 How does Hemoglobin Create Such Diverse Functionality of Physiological Relevance? Takashi Yonetani. Univ. Pennsylvania, Philadelphia, PA, USA. Hemoglobin (Hb) without heterotropic effectors or stripped Hb, is an O 2 -carrier with a high-affinity (P 50 <1 mmHg ,K R = 10 /mmHg . and K T = 0.3 /mmHg ), a modest cooperativty (K R /K T = 30), and a minimal Bohr effect (DH þ = 0.04 H þ /Hb). Thus, though the cooperative mechanism of Hb without consideration of heter- otrpic effects, may be of academic interest, stripped Hb is not a viable O 2 -car- rier under physiological conditions of P O2 from 7 to 23 mmHg at 15 o C (or from 30 to 100 mmHg at 37 o C). Such a benign functionality of stripped Hb is greatly 464a Tuesday, February 28, 2012

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464a Tuesday, February 28, 2012

reliable determination of the dissociation constant (KD) is typically limited tothe range 100 mM > KD > 1 nM. Nevertheless, interactions characterised bya higher or lower KD can be assessed indirectly, provided that a suitable com-petitive ligand is available whose KD falls within the directly accessible win-dow. Unfortunately, the established competitive ITC assay requires that thehigh-affinity ligand be soluble at high concentrations in aqueous buffer contain-ing only minimal amounts of organic solvent. This poses serious problemswhen studying protein binding of small-molecule ligands taken from com-pound libraries dissolved in organic solvents, as is usually the case duringscreening or drug development.Here we introduce a new ITC competition assay that overcomes this limitation,thus allowing for a precise thermodynamic description of high- and low-affinityprotein-ligand interactions involving poorly water-soluble compounds. We dis-cuss the theoretical background of the approach and demonstrate some practi-cal applications using examples of both high- and low-affinity protein-ligandinteractions.

2362-Pos Board B132A Chemical Proteomics Approach toward Identification of Human Absci-sic Acid-Binding ProteinsOlesya A. Kharenko, Devin Polichuk, Allison Didychuk,Michele C. Loewen.Plant Biotechnology Institute, Saskatoon, SK, Canada.Abscisic acid (ABA) is a plant hormone present in all plant-based food and hasno known toxic effects. Recently, ABA was shown to modulate various aspectsof human disease states in model systems. Presumably, ABA mediates its re-sponses through binding to receptors of as yet unknown identity. Using anABA mimetic photoaffinity probe applied in a chemical proteomics approachwe identified the 78 kilodalton glucose regulated protein 78 (GRP78;HSPA5; BiP) and 70 kilodalton heat shock protein (HSP70-2) as putative hu-man ABA-binding proteins. Both of these proteins have intracellular roles inprotein folding and are also known to be involved in extracellular receptor ac-tivities at the cell membrane. Characterization of the binding of ABA to theproteins of the heat shock protein 70 (HSP70) family, HSP70-1 and GRP78was carried out by surface plasmon resonance spectroscopy (SPR) in the pres-ence and absence of co-chaperone, DnaJ. DnaJ is known to control substratebinding of heat shock proteins. The binding affinities of both GRP78 andHsp70-1 for ABA were found to be in the mM range and increased dramaticallyin the presence of the co-chaperone. The lack of SPR signal upon injection ofstructurally but not functionally related molecule trans-cinnamic acid (CA),highlights the specificity of the ABA interaction with GRP78. Interestingly,ABA had differential effects on modulation of the ATPase activity of thesetwo HSP70 family proteins. Overall this work highlights a novel and potentiallyimportant interaction between a dietary plant hormone and human heat shockproteins. Determination of the biological relevance of this ABA/HSP interac-tion is currently underway.

2363-Pos Board B133Investigation of the Influence Glycosaminoglycan Sulfation on the Interac-tion with Interleukin-8 by Fluorescence and Solution NMR SpectroscopyAnnelie Pichert1, Sergey A. Samsonov2, Karoline Norsieck3,Annette G. Beck-Sickinger3, Marı́a T. Pisabarro2, Daniel Huster1.1Insitute of Medical Physics and Biophysics, University of Leipzig, Leipzig,Germany, 2BIOTEC, Technical University of Dresden, Dresden, Germany,3Institute of Biochemistry, University of Leipzig, Leipzig, Germany.The interactions between glycosaminoglycans (GAGs), important componentsof the extracellular matrix (ECM), and proteins such as growth factors and che-mokines play a critical role in cellular regulation processes. Previous work onthe chemokine Interleukin-8 (IL-8) has focused on its interaction with heparinand heparan sulfate, which regulate chemokine function. Nevertheless, low ornon sulfated GAGs such as hyaluronan (HA), dermatan sulfate (DS) and chon-droitin sulfate (CS), also contained in the extracellular matrix, have so far notbeen studied with regard to their distinct binding properties towards IL-8.In this work, we combine fluorescence as well as solution NMR experiments tostudy the recognition properties of GAG hexasaccharides, including HA, CS,DS and heparin, to IL-8. Using 1H-15NHSQC spectroscopy of IL-8 in the pres-ence of varying GAG concentrations, the interacting amino acid could be iden-tified. Furthermore to observe lysine side chains, a reductive methylation with[13C]-formaldehyde, adding two methyl groups to the ε-NH3þ of lysines with-out altering the positive charge, was performed. In order to resolve the signalsfrom the lysine side chains, 1H-13C HSQC spectra were recorded and the in-fluence of the GAGs was tested again.The results show that an increase in GAG sulfation enhances the strength of thebinding to the protein. In addition, in cases of equal degree of sulfation the po-sition of the sulfate group plays a crucial role sugessting that interactions be-

tween proteins and GAGs are not purely electrostatically driven and stericforces as well as contributions from hydrogen bonds have to be considered.These observations were also confirmed by molecular docking and dynamicsimulations providing a structural picture of the interaction of IL-8 with variousGAGs.

2364-Pos Board B134Fluorescent, Reagentless Biosensors for Phosphate: Altering Properties,Expanding UsefulnessSimone Kunzelmann, Annie Nofer, Colin Davis, Martin R. Webb.MRC National Institute for Medical Research, London, United Kingdom.Two forms of biosensor for inorganic phosphate (Pi) have been developed,based on the phosphate binding protein of Escherichia coli, and are now widelyused for time-resolved measurements of enzymes that produce Pi. One form isan adduct with a single coumarin fluorophore. For the second version, two cys-teine mutations were introduced and labeled with a rhodamine. When physi-cally close to each other and appropriately orientated, two rhodamine dyescan interact to form a non-covalent dimer. In this state they have little or nofluorescence, unlike the high fluorescence intensity of monomeric rhodamine.The labeling sites were so placed that the distance and orientation between therhodamines changes with the conformation change associated with Pi binding.This movement alters the extent of interaction between rhodamines and givesa large fluorescence increase as Pi binds. In both these forms, Pi binds rapidlyand tightly, making them good probes for rapid reaction assays, where all Pi canbe bound to the biosensor: that is, the probe must be at least stoichiometric withthe Pi. The rhodamine version has a large advantage over coumarin in terms ofsensitivity and photobleaching. However, to make the probe more useful fordifferent assay formats, such as high-throughput, the biosensor would best beused sub-stoichiometrically. This is more efficient in terms of usage amountsand has the potential of measuring over a wider range of Pi concentrations.To achieve this, several strategies were examined to locate mutations on thistwo domain protein to weaken the Pi binding while maintaining the fluores-cence response.

Heme Proteins

2365-Pos Board B135Porphyrin-Mediated Photoinduced Conformational Changes to HumanSerum Albumin at Physiological and Acidic pHSarah C. Rozinek, Lorenzo Brancaleon.University of Texas at San Antonio, San Antonio, TX, USA.Many of the biological and non-biological roles and uses of protoporphyrin-IX(PPIX) depend on its ability to bind large macromolecules such as human se-rum albumin (HSA). HSA is relevant to both biomedical and technologicalapplications of PPIX (both free-base and metal), and its binding site forPPIX-derivatives is well established. Once bound, Heme (FePPIX) has beshown capable of transiently bestowing altered ligand-binding and pseudo-enzymatic properties to HSA that could be linked to biological functions.The irradiation of PPIX non-covalently bound to Beta-Lactoglobulin (BLG)is known to produce protein conformational changes that appear to be pH-dependent due to BLG’s intrinsic conformational transitions. These processeshave not been extensively studied in non-physiological pH conditions forFePPIX or PPIX bound to HSA. This study implemented a combination of op-tical methods and computational simulations to compare the binding character-istics of hemin and PPIX to HSA as well as examine the structural effects oflow-dose irradiation of the ligand on the protein at different pH. Spectroscopicdata suggests that irradiation of the porphyrins’ Soret band, when bound toHSA, is capable of modifying the globular protein structure by direct chargetransfer mechanisms at both physiological and acidic pH conformations. Com-putational docking simulations predict lower free energy of binding for PPIXthan for heme.

2366-Pos Board B136How does Hemoglobin Create Such Diverse Functionality of PhysiologicalRelevance?Takashi Yonetani.Univ. Pennsylvania, Philadelphia, PA, USA.Hemoglobin (Hb) without heterotropic effectors or stripped Hb, is an O2-carrierwith a high-affinity (P50<1 mmHg, KR = 10 /mmHg. and KT = 0.3 /mmHg), a modestcooperativty (KR/KT = 30), and a minimal Bohr effect (DHþ = �0.04 Hþ/Hb).Thus, though the cooperative mechanism of Hb without consideration of heter-otrpic effects, may be of academic interest, stripped Hb is not a viable O2-car-rier under physiological conditions of PO2 from 7 to 23 mmHg at 15

oC (or from30 to 100 mmHg at 37

oC). Such a benign functionality of stripped Hb is greatly