5. biosintesis protein biokim inw
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Biosintesis ProteinMK. Biokimia
Universitas Udayana
I Nengah WirajanaEmail: [email protected]
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Pendahuluan
Anda telah mengetahui bagaimana DNAdireplikasi dan bagaimana DNA ditranskripsi
menjadi RNA.
Kita sekarang akan mempelajari mekanisme
sintesis protein, suatu proses yang disebut
translasikarena empat-hurup alfabet asam
nukleat (GACT) ditranslit menjadi dua puluh
hurup alfabet protein (20 asam amino). Translasi terjadi dalam ribosom.
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Pendahuluan
Protein Assembly. The ribosome, shown at the right, is a factory for the manufacture of
polypeptides. Amino acids are carried into the ribosome, one at a time, connected to transfer RNA
molecules (blue). Each amino acid is joined to the growing polypeptide chain, which detaches
from the ribosome only once it is completed. This assembly line approach allows even very long
polypeptide chains to be assembled rapidly and with impressive accuracy. [(Left) Doug
Martin/Photo Researchers.]Sumber : 1/1/2014 3
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Kodon
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Kodon = triplet pengkode asam amino
Woblefenomena pembentukan
pasangan basa komplementer antara
kodon dalam mRNA denganantikodonnya dalam tRNA pada
posisi ketiga dalam triplet biasanya
tidak terlalu terbatas seperti halnyapada dua posisi pertama.
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Codon Reading Frame
AUG is always thestart codon so allpolypeptides beginwith Methionine
when they aresynthesized
Having a consistentstart codon is
necessary so thatthe reading frameis always the same.
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1. Translasi Urutan Nukleotida
Menjadi Urutan asam Amino Dasar sintesis protein sama pada
semua mahluk hidup (all kingdoms of
life), menunjukkan fakta bahwa sistem
sintesis protein muncul paling awaldalam evolusi.
Protein disintesis dalam arah dari
amino-ke-karboksil, denganpenambahan secara berurutan asam
amino pada ujung karboksil dari rantai
peptida yang sedang tumbuh (lihatGambar berikut . 1/1/2014 8
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1. Translasi Urutan Nukleotida Menjadi Urutan asam Amino
Pertumbuhan rantai polipeptida. Protein
disintesis dengan penambahan berurutan
asam amino pada terminal/ujung karboksil.
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1.1. The Synthesis of Long Proteins Requires a
Low Error Frequency
The process of transcription is analogousto copying, word for word, a page from abook.
There is no change of alphabet orvocabulary; so the likelihood of a changein meaning is small.
Translating the base sequence of anmRNA molecule into a sequence of aminoacids is similar to translating the page of a
book into another language. Translation is a complex process,
entailing many steps and dozens ofmolecules. The potential for error exists at
each step. 1/1/2014 10
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1.2. Transfer RNA Molecules Have a
Common Design
The fidelity of protein synthesis requires theaccurate recognition of three-base codons onmessenger RNA.
Recall that the genetic code relates each amino
acid to a three-letter codon. An amino acid cannot itself recognize a codon.
Consequently, an amino acid is attached to aspecific tRNA molecule that can recognize thecodon by Watson-Crick base pairing.
Transfer RNA serves as the adapter moleculethat binds to a specific codon and brings with itan amino acid for incorporation into thepolypeptide chain.
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1.3. The Activated Amino Acid and the Anticodon of
tRNA Are at Opposite Ends of
the L-Shaped Molecule
The most important properties of the tRNA structure are:
1. The molecule is L-sh aped (Figur e 29.5).
2. There are two apparent ly co nt inuou s segments o f dou ble helix .These segments are l ike A-form DNA, as expected fo r an RNAhelix . The base-pairing predicted from the sequence analysis is
correct. The helix containing the 5 and 3 ends stacks on top of thehelix that ends in the TyC loop to form one arm of the L; theremaining two helices stack to form the other (Figure 29.6).
3. Most of the bases in the nonhelical regions participate inhydrogenbonding interactions, even if the interactions are notlike those in Watson-Crick base pairs.
4. The CCA terminus containing the amino acid attachment site
extends from o ne end o f the L. This sing le-stranded region canchange conformation during amino acid activation and proteinsynthesis.
5. The anticodon loop is at the other end of the L, makingaccessible the three bases that make up the anticodon.
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1.3. The Activated Amino Acid and the Anticodon of tRNA Are at Opposite
Ends of the L-Shaped Molecule
Figure 29.4. General Structure of tRNA Molecules. Comparison of the basesequences of many tRNAs reveals a number of conserved features.
29.5. L-Shaped tRNA Structure. A skeletal model of yeast phenylalanyl-tRNA revealsthe L-shaped structure. The CCA region is at the end of one arm, and the anticodon loopis at the end of the other.
Figure 29.6. Helix Stacking in tRNA. The four helices of the secondary structure oftRNA (see Figure 29.4) stack to form an L-shaped structure.
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2. Aminoacyl-Transfer RNA Synthetases
Read the Genetic Code
The linkage of an amino acid to a tRNA is crucial fortwo reasons. First, the attachment of a given amino acid to a particular
tRNA establishes the genetic code. When an amino acidhas been linked to a tRNA, it will be incorporated into agrowing polypeptide chain at a position dictated by theanticodon of the tRNA.
Second, the formation of a peptide bond between freeamino acids is not thermodynamically favorable. Theamino acid must first be activated for protein synthesis to
proceed. The activated intermediates in protein synthesis are
amino acid esters, in which the carboxyl group of anamino acid is linked to either the 2 - or the 3 -hydroxylgroup of the ribose unit at the 3 end of tRNA.
An amino acid ester of tRNA is called an aminoacyl-tRNAor sometimes a charged tRNA.1/1/2014 14
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2.1. Amino Acids Are First
Activated by Adenylation
The activation reaction is catalyzed by specific
aminoacyl-tRNA synthetases, which are also called
activating enzymes.
The first step is the formation of an aminoacyladenylate from an amino acid and ATP.
This activated species is a mixed anhydride in which
the carboxyl group of the amino acid is linked to the
phosphoryl group of AMP; hence, it is also known as
aminoacyl-AMP.
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The next step is the transfer of theaminoacyl group of aminoacyl-AMP to a
particular tRNA molecule to form
aminoacyl-tRNA.
The sum of these activation and transfersteps is
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Post Translation
Protein structure is determined byamino acid sequence and modifications
Modifications include
The attachment of certain sugars, lipids, orphosphate groups
Joining different subunits of the protein to
create the quaternary structure
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Point Mutations
The change of a single nucleotide in the
DNAs template strand
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Two Types of Mutation
Substitutions
Replacing one or more base with others
Insertions or DeletionsAdding or removing one or more base
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Gambaran umum proses ekspresi gen(dari transkripsi sampai translasi)
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Latihan soal
1. Urutan satu untai tunggal dari 53basanukleotida DNA open reading frame(ORF)
adalah sebagai berikut: 5- ATGGGCAA
ATTGCGCTTGGGGCCGCCGATGGTATTGC
CCAAATTTGCCCCGATGGTACCGGGGTAC
TTTTGGCCGCTCTAA-3
Tentukan urutan asam amino hasil translasi!
2. Jelaskan apa saja yang terlibat dalam prosesbiosintesis protein !
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Terima kasih, selamat
belajar!!!
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21 Metabolisme Karbohidrat, Siklus AsamSitrat dan Fosforilasi Oksidatif.
Selasa,27Nop2012 8.30- 10.10 Pak Wira
22 SGD 2 Klp(Pembentukan Keton bodi ,Transport lipida) Rabu, 28 Nop2012 8.30- 10.10 Bu Ratna +Klp15 dan Klp
1623 Lanjutan Metabolisme Karbohidrat Selasa, 4 Des2012 8.30- 10.10 Pak Wira22. SGD 2 Klp(Pengaturan Metabolisme
Karbohidrat Secara Hormonal, Gangguan
Klinis Metabolisme Karbohidrat)Rabu, 5 Des2012 11.00-11.50 Pak Wira , Klp
17 dan Klp 18
23. Struktur Asam Nukleat Selasa, 11 Des2012 8.30- 10.10 Pak Wira24. SGD 2 Klp + SGD 2 Klp(Struktur tRNA) dan
Struktur &fungsi Ribosom), Rabu, 12 Des2012 11.00-11.50 Pak Wira, Klp
19 dan Klp 20
25. Replikasi DNA dan Biosintesa Protein Selasa, 18 Des 2012 8.30- 10.10 Pak Wira26. Lanjutan + SGD 1 Klp(Antibiotik Penghambat
Replikasi/Translasi) Rabu, 19 Des 2012 11.00-11.50 Pak Wira danKlp 2127 Resume Rabu, 26 Des 2012 11.00- 11.50 Pak Wira
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