30 34 · michael abanto verstärkt seit dem 1. juni 2012 die biooptik-facility an der hebelstrasse!...
TRANSCRIPT
Biomarkers, regulators and effectors of low-grade gliomainvasion | Survival, proliferation, deletion: ask the lymph
node stroma! | Wien ist anders 2 12
Periodisches Informationsblatt des Departementes BiomedizinUniversität Basel, Universitätsspital Basel undUniversitäts-Kinderspital beider Basel
DBM Facts 2|2012 Departement Biomedizin
RedaktionHeidi Hoyermann
ÜbersetzungenPaula Cullen
LayoutEric Spaety, Morf Bimo Print AG, Binningen
IT-UnterstützungNiklaus Vogt
AdministrationManuela Bernasconi
FotosMathias Mangold www.sublim.chFrank Neumann
TitelfotoStairway to the atlantic ocean, Shutterstock
DruckMorf Bimo Print AG, Binningen
AnschriftRedaktion DBM FactsDepartement BiomedizinHebelstrasse 204031 [email protected]
IMPRESSUM
Editorial 1Auszeichnungen /Congratulations 13/14Publikationen /Publications 15Art 21Mitarbeitende /Colleagues 22Informatik /Informatics
36
Urlaubslektüreempfohlen von DBM Mitarbeitenden
Survival, proliferation,deletion: ask the lymph node stroma!from Simona Rossi Girard
Triathlonfrom Brynn Kvinlaug
Wien ist andersvon Denise Berger
Biomarkers, regulators andeffectors of low-grade gliomainvasionfrom Luigi Mariani
2
8 26
30 34
DBM Facts 2|2012 Department of Biomedicine
EDITORIAL
Peter Meier-AbtHead a.i.
Dear Readers
What news is there? Only positive news! On the 1st July 2012 Viola Heinzelmann will take up her position as
senior physician at the women's clinic and as research group leader at the DBM. Appointment negotiations are
underway with Prof. O. von Bohlen, the Professor of Haematology/Stem Cell Biology appointment report has
been accepted by the faculty. The long wait time for microscopy should be coming to an end: since the 1st of
June 2012 Michael Abanto has strengthened the bio-optic facility at Hebelstrasse! Roland Ivanek has begun with
the installation of bioinformatics at Mattenstrasse! We welcome them all and wish them every success!
In this summer issue Luigi Mariani and his co-workers share the most up to date knowledge about brain tumor
biology with us (page 2), Simona Rossi and her team introduce us to the Immunoregulation game (page 8), we
report on great achievements (page 13) and how simple and brilliant research can be (page 14). Brynn Kvinlaug
knows all about staying power, as a triathlete she does not stop, even in her free time (page 26). Denise Berger
does not stop either, as Vienna, her former chosen place of residence, challenges a person as a whole (page 30).
For those whom that is not yet enough, they are sure to find something to pass the time in the DBM book
reviews! Happy reading and enjoy the holidays!
Peter Meier-Abt
Liebe Leserinnen und Leser
Was gibt es Neues zu berichten? Nur Positives! Am 1. Juli 2012 nimmt Viola Heinzelmann ihre Tätigkeit als
leitende Ärztin in der Frauenklinik und Forschungsgruppenleiterin am DBM auf. Die Berufungsverhand-
lungen mit Prof. O. von Bohlen sind im Gange, der Berufungsbericht Professur Hämatologie/Stamm-
zellbiologie wurde von der Fakultät akzeptiert. Die langen Wartezeiten am Mikroskop haben ein Ende:
Michael Abanto verstärkt seit dem 1. Juni 2012 die Biooptik-Facility an der Hebelstrasse! Mit dem Aufbau
der Bioinformatik an der Mattenstrasse hat Roland Ivanek angefangen! Allen viel Erfolg und ein herzliches
Willkommen!
In der nun vorliegenden Sommerausgabe teilen uns Luigi Mariani und seine Mitarbeitenden die neuesten
Erkenntnisse aus der Brain Tumor Biology mit (ab Seite 2), führen uns Simona Rossi und ihr Team in das
Spiel der Immunoregulation ein (ab Seite 8), berichten wir von grossen Erfolgen (Seite 13) und davon, wie
einfach und genial Forschung sein kann (Seite 14). Durchhaltevermögen anderer Art beweist Brynn Kvin-
laug, die als Triathletin auch in der Freizeit nicht so schnell aufgibt (ab Seite 26). Das tut Denise Berger auch
nicht, fordert ihre ehemalige Wahlheimat Wien doch den ganzen Menschen heraus (ab Seite 30). Und wem
das noch nicht genug ist, der findet sicher unter den DBM Lesetipps den richtigen Zeitvertreib!
Viel Spass beim Lesen und schöne Ferien!
Peter Meier-Abt
DBM Facts 2|2012 Departement Biomedizin
2 WISSENSCHAFT | SCIENCE DEPARTEMENT BIOMEDIZIN HEBEL STRASSE
Biomarkers, regulators andeffectors of low-grade gliomainvasion
The group ‘Brain Tumor Biology’. From left to right. Standing: Archana Ramadoss, Marie-Françoise Ritz, Gregor Hutter, Luigi Mariani, Jean-Louis Boulay. Sitting: Severina Leu, Cristóbal Tostado, Elisabeth Taylor. Missing on the picture: Martin Sailer
Glioma progress by tumor cell invasion into adjacent brain tissue. The main goal of the Laboratory of Brain Tumor Biology is to understand mechanisms underlying tumor cell invasion. This involves the identification of biomarkers, genetic regulators, molecular networks and molecular effectors of tumor cell invasion that can ultimately be targeted to control glioma progression.
DBM Facts 2|2012 Department of Biomedicine
DEPARTMENT OF BIOMEDICINE HEBEL STRASSE WISSENSCHAFT | SCIENCE 3
Introduction
Gliomas are among the deadliest malignancies, with a
median survival varying between few months for the
most frequent malignant grade IV glioblastoma (GBM),
to over 20 years for the low-grade glioma (LGG). Given
the extremely high resistance of tumor cells to chemo-/
radiotherapy, conventional therapies have not signifi-
cantly improved patient survival. In addition, the high
invasive capacity of glioma cells into adjacent brain tis-
sue compromises total surgical resection. Besides grad-
ing, glial tumors are classified into histologic subtypes
based on morphologic and antigen expression features.
The finding of chromosomal alterations and gene muta-
tions allowed the identification of some glioma devel-
opmental pathways and refined classification into mo-
lecular subsets with various degrees of aggressiveness
or responsiveness to current therapies.
The research of the Laboratory of Brain Tumor Biology,
in close partnership with the Neurosurgery Clinic, fo-
cuses on glioma, and more specifically, on LGG. At the
clinical point of view, we aim at defining biomarkers to
classify LGG into molecular subsets to standardize treat-
ment strategies. At a more basic level, we aim at identi-
fying genetic regulators and molecular effectors of gli-
oma cell invasion. For both purposes, we are collecting
resected glioma biopsies of distinct grades and histolo-
gies directly in the operating room for further analytical
and experimental purposes.
Genotyping low-grade gliomas
In collaboration with Stephan Frank (Pathology, UHBS),
Stefanie von Felten (Clinical Trial Unit, UHBS), Istvan Vajtai
and Erik Vassella (University of Bern).
Based on histology, LGG have been divided into three
distinct subsets: diffuse astrocytoma (A), oligoastrocy-
toma (OA) and oligodendroglioma (OG). Molecular ge-
netic and genomic analyses of LGG have identified four
major alterations relevant to LGG development: IDH mu-
tations and MGMT gene promoter methylation in nearly
80% of LGG, and TP53 mutations and 1p/19q allelic loss,
each occurring in nearly 25% of LGG in a mutually exclu-
sive manner. IDH genes encode isocitrate dehydroge-
nase that normally catalyzes the conversion of isocitrate
into α-ketoglutarate (αKG) in the Krebs cycle. The muta-
Figure 1. Association between IDH mutation and favorable outcome in LGG patients.
imputed dataobserved data
DBM Facts 2|2012 Departement Biomedizin
4 WISSENSCHAFT | SCIENCE DEPARTEMENT BIOMEDIZIN HEBEL STRASSE
tions create a novel catalytic function that converts αKG
into 2-hydroxyglutarate (2HG). Accumulation of 2HG
oncometabolite leads to genome-scale impaired DNA
demethylation that results in extensive methylome and
transcriptome remodelling, which includes methyla-
tion of the MGMT gene promoter. These are early events
in the course of gliomagenesis and provide a molecu-
lar basis for the co-segregation observed between IDH
mutation and MGMT methylation. Later, TP53 mutations
and 1p/19q allelic loss occur preferentially in A and OG,
respectively. We are currently analysing the impact of
these alterations on survival of >200 LGG in a retrospec-
tive study. In order to increase accuracy, missing data, a
major issue in retrospective studies, is being compen-
sated by multiple imputation.
Identification of novel biomarkers for gliomas
As depicted in Figure 2, glioma can be divided into 4 ma-
jor molecular groups based on genomic, transcriptomic
and proteomic/phosphoproteomic profiles: proneural
(includes LGG with IDH mutation, MGMT methylation or
PDGFRA amplification, derived anaplastic glioma and
GBM), classical (GBM that contain EGFR amplification/
mutation and CDKN2A loss), neural (GBM with additional
TP53 mutations), and mesenchymal (ultimate GBM de-
velopmental stage).
Upon surgical resection, we routinely extract DNA, RNA
and protein from tumor biopsies. This material is used
to attempt a systematic molecular classification of glio-
mas of all grades and histologies operated at the Neu-
rosurgical Clinic. In cases where biopsies are taken from
distinct areas of the tumor core and of the invasive rim
at tumor periphery, variations in RNA expression be-
tween these distinct areas of the same tumor will be
examined.
We are currently constructing a comprehensive, web-
based glioma patient database containing personal (de-
mographics, etiology, personal history); clinical (patient
outcome, survival); MRI imaging (tumor size, location
and infiltration grade), histopathological (tumor histol-
ogy and WHO grade) and molecular annotations (geno-
typing, transcriptome, proteome and activated signal-
Figure 2. Glioma classification based on genomic and genetic data. From Verhaak et al., Cancer Cell (2010) 17:98.
DBM Facts 2|2012 Department of Biomedicine
DEPARTMENT OF BIOMEDICINE HEBEL STRASSE WISSENSCHAFT | SCIENCE 5
ing pathways). Classification of gliomas according to
histologic, molecular and invasive features, will allow
identification of novel glioma biomarkers, and hope-
fully identification of subgroups of glioma responsive
to customized therapies.
Isolation and ex vivo culture of glioma cells from
resected tumors
Parts of the resected tumors are also subjected to cell
dissociation for ex vivo cell culture. Glioma cells are then
grown ex vivo to establish long-term glioma stem cell
and differentiation cultures. Whenever possible, biop-
sies are taken from distinct areas of the tumor core and
of the invasive rim at tumor periphery to test their re-
spective invasive behaviours. Further, putative glioma
stem cells are xenografted orthotopically into the brains
of immunocompromized mice to assess their tumori-
genicity in vivo.
Molecular and genetic mechanisms of glioma
invasion
We aim at identifying genetic determinants and molecu-
lar effectors of glioma invasion by comparing, on one
hand, expression profiles of invasive vs. non-invasive
tumors and, on the other hand, expression patterns of
distinct areas within the same tumor.
Earlier data on genome-wide transcription analysis of
invasive compared to non-invasive gliomas have indi-
cated that tumor invasiveness is independent of a given
histologic or a molecular subset. Indeed, the signature
for invasiveness was associated with the differential
regulation of a discrete number of genes only. Among
those, we consistently found the gene for the mediator
of glioma invasion BEHAB/brevican, and also the genes
encoding transcription factors SOX2 and HEY1, suggest-
ing a possible role for these genes in glioma invasion.
Target genes for SOX2 and HEY1 encoding potential ef-
fectors of glioma invasion will be identified and tested
for their capacities of altering glioma cell motility.
Figure 3: Genotyping of tumor biopsies. Data obtained from real-time quantitative PCR (EGFR, CDKN2A, IL13RA2, ERBB2, NF1, PDGFRA, CKIT); loss of heterozygosity (PTEN, TP53, TRIM3); fluorescent in situ hybridization (1p/19q); pyrosequencing (IDH1/2) and sequencing of modified DNA (MGMT). ret = retention of both (polymorphic) alleles, loh = loss of heterozygosity (loss of one polymorphic allele), ni = non informative (no allelic polymorphism), nd = not done.
DBM Facts 2|2012 Departement Biomedizin
6 WISSENSCHAFT | SCIENCE DEPARTEMENT BIOMEDIZIN HEBEL STRASSE
As a complementary approach, identification of invasion
genes also involves comparison of RNA levels between
the invasive glioma cells located at the periphery of the
tumor, and the non-invasive glioma cells embedded in
the tumor mass. Genes showing significant differential
expression between the distinct zones will be validated
for their abilities in modulating glioma invasion. Results
should provide clues on the molecular mechanisms of
glioma invasion and designate potential targets for cus-
tomized therapies to control glioma invasion.
In collaboration with Stephan Frank (Pathology, UHBS), Ist-
van Vajtai and Erik Vassella (University of Bern).
Some tumors, for which imaging data were available,
could be graded for their invasion capacities by mea-
surement of the thickness of the infiltration zone. Micro
RNAs are being extracted from formalin-fixed paraffin-
embedded tumors of known invasive properties, and
micro RNA expression compared by micro-array hybrid-
ization.
Positional information and tumor invasion
Mechanisms of migration and invasion are also stud-
ied using rat embryonic neural stem cells (NSCs). These
cells, when isolated from the embryonic cortex at E14.5
and put in culture in the presence of growth factors
such as FGF, undergo a change from dorsal to ventral
identity, as indicated by the expression of ventral genes
and the inhibition of the expression of dorsal genes.
After addition of bone morphogenic protein 4 (BMP4),
dorsal genes are re-expressed, ventral genes repressed.
Interestingly, NSCs also upregulate expression of sev-
Figure 4. Human cells dissociated from a grade IV GBM expand as GFAP/Nestin-positive adherent cells in FCS-containing medium, or as floating spheres in stem cell medium.
DBM Facts 2|2012 Department of Biomedicine
DEPARTMENT OF BIOMEDICINE HEBEL STRASSE WISSENSCHAFT | SCIENCE 7
eral genes, such as SPARC, TNC and
HEY1, known to be expressed during
tumor invasion (Figure 6). Moreover,
these NSCs show migratory and inva-
sive properties in several in vitro as-
says. The identification of the molecu-
lar pathways involved in this transition
may help us to unravel the mecha-
nisms inducing invasion and migra-
tion of normal NSCs but hopefully also
of GBM tumor cells.
Luigi Mariani
Figure 5. confocal SOX2 immunolabeling in U373 glioma cells
Figure 6: Gene expression according to dorso-ventral positional information in NSCs exposed to FGF followed by BMP4 in vitro.Schematic coronal section of rat embryonic brain.
DBM Facts 2|2012 Departement Biomedizin
8 WISSENSCHAFT | SCIENCE DEPARTEMENT BIOMEDIZIN HEBEL STRASSE
Survival, proliferation,deletion: ask the lymph node stroma!Transplantation and the immunoregulation game
From left to right: Maria Broggi, Nicolas Page, Simona Rossi Girard, Mathias Schmaler.
DBM Facts 2|2012 Department of Biomedicine
DEPARTMENT OF BIOMEDICINE HEBEL STRASSE WISSENSCHAFT | SCIENCE 9
When we think about organ transplantation, the image
of patients first waiting for a transplant and then taking
medication for the rest of their life fills our imagination.
The surgical and the immunological knowledge of the
last 30 years have made it possible to live longer with an
appreciably better quality of life. The goal in transplan-
tation research is to be able to achieve graft tolerance
by convincing the transplanted body that the organ or
tissue received is not immunologically dangerous. How
to convince the host immune system that the danger
signals, the inflammation and the antigen that are flow-
ing in the body are harmless? This is a hard job...
To dampen a graft-specific immune response, we first
need to understand the starting point and how the en-
vironment modulates this immune response.
The players
More than 15 years ago a subset of T cells were described
bearing immunosuppressive properties and those cells
were called regulatory T cells (Tregs). Tregs are studied
with great interest because they are selectively able to
block the activation of T cells. The biggest problem for
in vivo treatment with Tregs is the high number of cells
needed to be transferred to achieve suppression of T cell
activation. Currently the clonal expansion is achieved in
culture and the cells are transferred into patients. Would
it be possible to boost the suppressive activity or the
number of Tregs directly in vivo? First we need to under-
stand where Tregs get activated and where they prefer-
entially exert their function. We take advantage of a skin
transplantation model where the host mouse is empty
of T and B cells and the skin donor harbours a mutation
in the gene encoding the MHC class II molecules. We can
modulate the outcome of transplantation by an adop-
tive co-transfer of alloreactive T cells (Teff) and Tregs
(Fig. 1a-model, b-graft survival). The first observation is
that the co-transferred Teff and Tregs reach and stay in
the lymph node (Ln). When Teff are transferred alone
in the host, they start to migrate in the grafted skin 9
days post-transfer leading to the skin-graft rejection.
Since, in presence of Tregs, Teff stay in the Ln and their
number only moderately increase, we concentrated our
effort to understand what is happening in the Ln. The
Ln is composed by several stroma cell subpopulations,
mainly categorised in 4 groups following the surface ex-
pression of a glycoprotein responsible for the sticking
of chemokines, called podoplanin or gp38 and CD31,
also known as platelet endothelial cell adhesion mol-
ecule (PECAM-1) (Fig. 2, adapted from Turley SJ et Al. ,
Nat Rev Immunol, 2010). Vascular endothelial cells ex-
press CD31 (lymph: CD31+gp38+, blood: CD31+gp38-).
The other cells, expressing only gp38 are known as fi-
broblastic reticular cells (FRC) and the cells negative
for both markers (DN) were recently described to be
pericytes-like-cells surrounding lymph and blood ves-
sels. The stromal compartment provides the structure
of the Ln and attracts and guides T cells and dendritic
cells (DC) to favour their contact. Furthermore, the stro-
ma cells of the Ln are producers of survival-, growth-
factors, cytokines and chemokines that influence both
T cells and DC. The recent knowledge on the active role
Fig. 1a) Skin transplantation model.b) Graft tolerance is dependent from the number of Tregs (10:1 means 10 Tregs per 1 Teff). Teff and Treg were adoptively transferred into the host twenty days after skin transplantation (day 0).
DBM Facts 2|2012 Departement Biomedizin
10 WISSENSCHAFT | SCIENCE DEPARTEMENT BIOMEDIZIN HEBEL STRASSE
of stromal cells in modulating the immune response,
lead us to the idea that the environment where T cells
get activated or inhibited by the presence of Tregs, can
be conditioned to produce or abrogate the expression
of survival factors and growth factor influencing the im-
mune response.
The game
Transplanting a piece of tail skin expressing MHC class
II molecules with a mismatch onto a recipient mouse is
sufficient to induce an alloimmune response. Since our
recipient mouse is Rag ko, a strain defined by the ab-
sence of T or B cells, we transfer different ratio of Tregs
and Teff. Teff are monoclonal TcR transgenic cells that
recognise and get activated by the MHC class II alloanti-
gen expressed by the graft. Teff alloactivation, but not
proliferation, is impaired by the presence of Tregs (Fig.
3a). To achieve tolerance we observed that the number
of players in the lymph node field is determining the
outcome: if more Tregs are in the lymph node then Teff
(ratio > 1), a week after adoptive transfer, long term tol-
erance is achieved (Fig. 3b).
The field
T cells activation occurs in the Ln, where we can detect
migration of donor Langerhans-DC expressing allo-
MHC class II molecules. Our main research question is:
are Tregs supported in their regulatory function by the
Ln environment? The characterisation of this potential
function of the Ln stroma can lead to the design of new
therapeutic strategy that could modulate the suppres-
sive capacity of Tregs.
First we wondered whether stromal cells can respond
to activated T cells and if this is modulated by the pres-
ence of Tregs. Therefore, we isolated Ln stromal cells
through enzymatic digestion and isolated them by
cell sorting according to the expression of gp38 and
CD31 (Fig 4a). Our group (not published) and others 1,2
showed that stroma cells are able to respond to IFN-γ
produced by activated T cells by inducing the produc-
tion of Nitric Oxide (NO) and, in turn, by inhibiting T cell
Fig. 2 Stromal cell populations and their location in the Ln. (Adapted from: Turley SJ, et Al., Nat Rev Immunol, 2010) Fibroblastic reticular cell (FRC) networks are found in T cell zones in the paracortex of the lymph node, where T cells and dendritic cells (DCs) encounter each other. Follicular dendritic cell (FDC) networks organise B cell follicles. Lymphatic endothelial cells form the affer-ent and efferent lymphatic vessels; they mediate the movement of leukocytes and lymph into the lymph nodes. Blood endo-thelial cells line blood vessels and form specialised structures known as high endo-thelial venules (HEVs), which are surrounded by a thick basal lamina and perivascular sheath.
Fig. 3a) Tregs do not stop, but delay proliferation of Teff upon antigen recognition (right panel). Also Tregs undergo proliferation (left panel).b) The ratio between Tregs and Teff in the lymph node deter-mines the transplant outcome. A ratio above 1 predicts toler-ance.
DBM Facts 2|2012 Department of Biomedicine
DEPARTMENT OF BIOMEDICINE HEBEL STRASSE WISSENSCHAFT | SCIENCE 11
proliferation in vitro (Fig. 4b). IL7 production by stromal
cells was upregulated as was RANKL, PDL1, MHC class II
and CD86 (Fig. 4c), suggesting that the stroma might
help the activation of T cells and control their activa-
tion status. In the presence of Tregs early in activation
nothing happens. It seems that the message the stroma
should get to be activated is missing. Indeed with high
Treg numbers the IFN-γ in the lymph node is strongly
reduced during activation. However, once tolerance is
established, Tregs themselves start to transcribe IFN-γ.
At the same time we detected an increased transcrip-
tion of RANKL, PDL1, MHC class II and CD86 by stromal
cells. The question that we currently aim to answer is
whether the same factors can elicit different effects de-
pending on the activation of T cells. A good candidate
molecule produced by Ln stromal cells that could play
an important role in helping Tregs survival and suppres-
sion is IL7 and the opportunity to collaborate with the
group of Daniela Finke provides us with several tools to
better define this potential mechanism. Indeed, during
tolerance establishment in vivo, we observe a X-expres-
sion pattern of IL-7, suggesting a pleiotropic role of this
cytokine depending on the presence of Tregs (Fig. 5a).
To assess the effect of IL-7 on the suppressive capac-
ity of Tregs we performed a suppression assay with or
without mrIL-7 in which Teff were activated with anti-
CD3/CD28 beads. In fact, we observed that the pres-
ence of mrIL-7 can substitute the presence of stromal
cells in sustaining the suppressive capacity of Tregs
(Fig. 5b). Furthermore, IL-7-conditioned Tregs showed
an increased suppressive activity in co-culture with allo-
activated Teff (Fig. 5c). The ongoing experiments in vivo
will clarify the role of IL-7 in a more complex system.
IL-7 is already being used in a clinical trial for bone mar-
row transplantation and correlations coming from pa-
tient data indicate that the Tregs pool can profit from
this treatment. Can we convince the stroma to better
sustain Tregs function? This is the challenge ahead of
us and the main workers on this project are Maria and
Mathias.
Other game, same players: outcome?
Transplantation of mismatch tissues or organs induc-
es a sterile inflammation and the direct activation of T
cells. What about inflammation induced by infection?
Mathias is investigating the activation pattern of lymph
node stroma cells during bacterial infections. Stroma
cells express the TLR receptor family and therefore have
the ability to respond to bacterial and danger pattern
molecules (PAMPs). Indeed, stimulation with different
PAMPs or TLR triggering molecules showed an activation
pattern of the lymph node stroma, but the effect is not
as dramatic as with IFN-γ stimulation. Usually, during
bacterial infection, pro-inflammatory cytokines are re-
leased at the site of infection and, together with PAMPs,
reach the Ln. The combination of cytokines and PAMPs
Fig. 4a) Magnetic cell sorting strategy to isolate stroma cells. FRC are Gp38+CD31- and the DN population is negative for both markers.b) Stroma is able to inhibit the proliferation of DC-activated T cells. T cells were cultured with stroma only, stroma and DC 1:1 or only with DC and the proliferation was assessed after 7 days co-culture.
12 WISSENSCHAFT | SCIENCE INSTITUTE OF PHYSIOLOGY
DBM Facts 2|2012 Departement Biomedizin
12 WISSENSCHAFT | SCIENCE DEPARTEMENT BIOMEDIZIN HEBEL STRASSE
increases the expression of ICAM, VCAM, cytokines and
chemokines on the surface of stroma cells in the lymph
nodes involving increased T cells recruitment. What is
the role of stroma during infection? Sustaining T cell ac-
tivation? Maintaining a structural integrity of the lymph
node or helping Tregs dampen the cytokine storm? This
research field is just at the beginning and we hope to
soon better understand the role of the different players.
Recently another group described the ability of lymph
node stroma cells to clonally delete OT-I CD8 T cells in
the context of the iFABP-tOVA model, where FRC were
shown to be able to process ovalbumin and display OTI
peptide on MHC class I molecules. Stroma cells delete in
the periphery the autoreactive OVA cells3. A similar sys-
tem for the CD4 T cells was never described.
During the evaluation of the ability of lymph node stro-
ma cells to respond to TLR triggering, Nicolas observed
in vivo and in vitro that TLR9 activation by immunostim-
ulatory CpG oligodeoxynucleotides induced high level
of MHC class II molecules at the surface of the lymph
node stroma cells. In autoimmune diseases such as
Systemic Lupus Erythematosous a defective clearance
of dead and dying cells are known to contribute to its
ethiopathogenesis. This defective clearance of apoptot-
ic cells results in accumulation of apoptotic debris and
necrotic DNA. Together with autoantibodies, necrotic
DNA form DNA-containing immune complexes that will
activate TLR9 signaling in dendritic cells. This excessive
TLR9 activation drives production of IFN-γ, leading to
Fig. 5a) IL-7 transcription is downregulated over time in lymph node stroma of mice trans-planted and adoptively transferred with Teff (squares) and is upregulated over time in mice transplanted and adoptively transferred with Tregs:Teff at a ratio of 10:1 (circles).b) Addition of IL-7 in co-culture can substitute the effect of stroma on ABM proliferation. Co-cultured performed for 3 days. T cells were activated with anti-CD3/28 beads and cultured in presence or absence of Ln stroma or 50 ng/ml rmIL-7. c) IL-7 improves Tregs suppressive function in vitro. Proliferation of ABM cells in co-culture for 5 days with allogenic DC in presence or absence of Tregs.
an alteration of T and B-cell profiles, disruption of Treg
networks, and exacerbates the clinical manifestation of
lupus. In a lupus-prone mouse MRL/lpr, MHC class II ex-
pression is increased at the surface of Ln FRC (our own
observation) and we are currently evaluating the cellu-
lar and molecular basis of this TLR9-mediated MHC class
II expression in Ln stroma cells and its biological impact.
We are especially interested in investigating the poten-
tial of Ln stroma cells to maintain peripheral tolerance
by controlling the pool of autoreactive CD4+ lympho-
cytes in a model of lupus.
Taken all together lymph node stroma cells are efficient
players of the immunoregulation game. They can react
to cytokines and microbial stimuli to sustain or down
modulate the immune response. A better understand-
ing of this cellular compartment will open new “regula-
tory” perspectives.
Acknowledgement
The Immunoregulation group would like to thank the
sorting-facility for the incredible work performed with
us, the animal care facility for their help and all the
groups at the DBM that help us to “win” the game.
Simona Rossi Girard
INSTITUTE OF PHYSIOLOGY WISSENSCHAFT | SCIENCE 13
DBM Facts 2|2012 Department of Biomedicine
DEPARTMENT OF BIOMEDICINE AUSZEICHNUNGEN | CONGRATUL ATIONS 13
Literature
1. Lukacs-Kornek, V. et al. Regulated release of nitric oxide by nonhematopoietic stroma controls expan-
sion of the activated T cell pool in lymph nodes. Nat Immunol (2011).doi:10.1038/ni.2112
2. Siegert, S. et al. Fibroblastic Reticular Cells From Lymph Nodes Attenuate T Cell Expansion by Produc-ing Nitric Oxide. PLoS ONE 6, e27618 (2011).
Markus Heim von der Forschungsgruppe Hepatology
(DBM Hebelstrasse) hat am 24. April 2012 gemeinsam
mit Lars French den mit 200‘000 CHF dotierten Otto
Naegeli Preis erhalten. Damit wurden zwei Experten
ausgezeichnet, die mit ihrer translationalen biomedi-
zinischen Forschung Grundlagen- und klinische For-
schung miteinander verknüpfen. Markus Heim wurde
für seine international anerkannte Forschung über die
Otto Naegeli Preis 2012 an Markus Heim
molekularen Mechanismen der Wechselwirkung zwi-
schen dem Hepatitis C Virus und der Interferon-Signal-
gebung in der Leber geehrt. Er konnte mit seinem Team
nachweisen, warum gängige Therapieansätze oft nicht
den gewünschten Effekt erzielten. Der Otto Naegeli
Preis wird alle zwei Jahre an herausragende Persönlich-
keiten auf dem Gebiet der medizinischen Forschung
verliehen.
3. Fletcher, A. L. et al. Lymph node fibroblastic reticular cells directly present peripheral tissue antigen under steady-state and inflammatory conditions. Journal of Experimental Medicine 207, 689-697 (2010)
Von links nach rechts: Markus Heim, H.J. Schürmann, Lars French. Foto: Vijay Shanker
«Gute und sauböse Zelle»:Ed Palmer gewinnt Science Slam 2012
14 AUSZEICHNUNGEN | CONGRATUL ATIONS DEPARTMENT OF BIOMEDICINE
DBM Facts 2|2012 Departement Biomedizin
Ed Palmer von der Forschungsgruppe
Transplantation Immunology (DBM He-
belstrasse) hat mit seiner Präsentation
« Wäg mit de böse Immunzälle: E vier-
sekündigs Tächtelmächtel und die Sach
isch gritzt ! » den von der Universität
Basel und der Fachhochschule Nord-
westschweiz getragenen Science Slam
gewonnen. In dem Wettbewerb treten
acht Wissenschaftler gegeneinander an
und stellen in acht Minuten ihre For-
schung auf unkonventionelle Weise vor.
Wer diesen genialen Vortrag am 27. April
2012 verpasst hat, kann ihn auf dem
Youtube-Kanal der Universität Basel
nochmals anschauen. So unterhaltsam
kann Wissenschaft ein!
Kläbeane
Körpermolekül
MolekularsTächtelmächtel
➜
BiochemischesFüürwerk
➜
WÄG mit dr Böse T Zälle➜
Zämmefassig
….und 100 Milliarde mool wiiderhole !!!
Das brucht 4 sekunde
DissertationenMit der Doktorprüfung am 5. März 2012 schloss Marco
Osterwalder von der Forschungsgruppe Developmen-
tal Genetics (Departement Biomedizin Mattenstrasse)
erfolgreich seine Dissertationszeit ab. Das Thema sei-
ner Doktorarbeit lautete: «Genome-wide identification
of Hand2 target regions in mouse embryos using dRM-
CE, a new genetic tool».
Am 29. März 2012 stellte sich Michael Dill von der For-
schungsgruppe Hepatology (Departement Biomedizin
Hebelstrasse) dem Dissertationskomitee. Der Titel sei-
ner Dissertation lautete: «Hepatitis C: Host-virus inter-
actions and their impact on treatment of response».
Venia docendi anMarianne Böni-Schnetzler
In ihrer Sitzung am 11. April 2012 erteilte die Regenz
der Universität Basel Marianne Böni-Schnetzler von der
Forschungsgruppe Diabetes Research (Departement
Biomedizin Hebelstrasse) die Venia docendi für Endo-
krinologie, Diabetologie und Metabolismus.
Herzliche Gratulation an alle!
DEPARTMENT OF BIOMEDICINE PUBLICATIONS 15
DBM Facts 2|2012 Department of Biomedicine
Selected publications by DBM members
Below you can find the abstracts of recent articles published by members of the DBM. The abstracts are grouped according to the impact factor of the journal where the work appeared. To be included, the papers must meet the following criteria:
1. The first author, last author or corresponding author (at least one of them) is a member of the DBM. 2. The DBM affiliation must be mentioned in the authors list as it appeared in the journal. 3. The final version of the article must be available (online pre-publications will be included when the correct volume, page numbers etc. becomes available).
We are primarily concentrating on original articles. Due to page constraints, abstracts of publications that appeared in lower ranked journals may not be able to be included. Review articles are generally not considered, unless they appeared in the very top journals (e.g. Cell, Science, Nature, NEJM, etc.). The final decision concerning inclusion of an abstract will be made by the chair of the Department of Biomedicine.
If you wish that your article will appear in the next issue of DBM Facts please submit a pdf file to the Departmental Assistant, Manuela Bernasconi: [email protected]
Deadline for the next issue is July 31, 2012.
Nature Immunology Vol. 13 No. 5 May 2012 IF25,6
Peroxisome-derived lipids are self antigens that stimulate invariant natural killer T cells in the thymus
Federica Facciotti1,5, Gundimeda S Ramanjaneyulu1, Marco Lepore1, Sebastiano Sansano1, Marco Cavallari1,Magdalena Kistowska1,5, Sonja Forss-Petter2, Guanghui Ni3, Alessia Colone4, Amit Singhal4, Johannes Berger2,Chengfeng Xia3, Lucia Mori1,4, & Gennaro De Libero1,4
1 Experimental Immunology, Department of Biomedicine, University Hospital Basel, Switzerland2 Medical University of Vienna, Center for Brain Research, Vienna, Austria.3 State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute
of Botany, Chinese Academy of Sciences, Kunming, China.4 Singapore Immunology Network, Agency for Science, Technology and Research, Biopolis, Singapore.5 Istituto Nazionale di Genetica Molecolare, Milano, Italy (F.F.), and Department of Dermatology,
Zurich University Hospital, Switzerland (M.K.).
The development and maturation of semi-invariant natural killer T cells
(i NKT cells) rely on the recognition of self antigens presented by CD1d
restriction molecules in thymus. The nature of the stimulatory thymic
self lipids remains elusive. We isolated lipids from thymocytes and found
that ether-bonded mono-alkyl glycerophosphates and the precursors
and degradation products of plasmalogens stimulated i NKT cells. Syn-
thetic analogs showed high potency in activating thymic and peripheral
i NKT cells. Mice deficient in the peroxisomal enzyme glyceronephos-
phate O-acyltransferase (GNPAT), essential for the synthesis of ether lip-
ids, had significant alteration of the thymic maturation of i NKT cells and
fewer i NKT cells in both thymus and peripheral organs, which confirmed
the role of ether-bonded lipids as i NKT cell antigens. Thus, peroxisome-
derived lipids are nonredundant self antigens required for the generation
of a full i NKT cell repertoire.
16 PUBLICATIONS DEPARTEMENT BIOMEDIZIN
DBM Facts 2|2012 Departement Biomedizin
Developmental Cell 22, 837–848, April 17, 2012 IF13,9
GLI3 Constrains Digit Number by Controlling Both Progenitor Proliferation and BMP-Dependent Exit to Chondrogenesis
Javier Lopez-Rios1, Dario Speziale1,*, Dimitri Robay1,5,*, Martina Scotti3,*, Marco Osterwalder1, Gretel Nusspaumer2,Antonella Galli1,6, Georg A. Holländer2,4, Marie Kmita3 and Rolf Zeller1
Summary
Inactivation of Gli3, a key component of Hedgehog signaling in verte-
brates, results in formation of additional digits (polydactyly) during limb
bud development. The analysis of mouse embryos constitutively lacking
Gli3 has revealed the essential GLI3 functions in specifying the anteropos-
terior (AP) limb axis and digit identities. We conditionally inactivated Gli3
during mouse hand plate development, which uncoupled the resulting
preaxial polydactyly from known GLI3 functions in establishing AP and
digit identities. Our analysis revealed that GLI3 directly restricts the ex-
pression of regulators of the G1–S cell-cycle transition such as Cdk6 and
1 Developmental Genetics, Department of Biomedicine2 Department of Biomedicine and Children’s Hospital University of Basel, Switzerland3 Laboratory of Genetics and Development, Institut de Recherches Cliniques de Montréal, Québec H2W1R7, Canada4 Developmental Immunology, Department of Pediatrics, University of Oxford, UK5 Basilea Pharmaceutica International, Basel, Switzerland6 Department of Medicine and Genetics&Development, Herbert Irving Comprehensive Cancer
Center, Columbia University Medical Center, New York, USA* These authors contributed equally to this work
Gastroenterology 2012; 142: 967–977 IF 12,0
Disruption of Notch1 Induces Vascular Remodeling, IntussusceptiveAngiogenesis, and Angiosarcomas in Livers of Mice
Michael T. Dill1, Sonja Rothweiler1, Valentin Djonov2, Ruslan Hlushchuk2, Luigi Tornillo3, Luigi Terracciano3, Silvia Meili-Butz1, Freddy Radtke5, Markus H. Heim1,4, David Semela1,4
Background & Aims: Notch signaling mediates embryonic vascular de-
velopment and normal vascular remodeling; Notch1 knockout mice de-
velop nodular regenerative hyperplasia (NRH). The pathogenesis of NRH
is unclear, but has been associated with vascular injury in the liver sinu-
soids in clinical studies. We investigated the role of Notch1 signaling in
liver sinusoidal endothelial cells (LSECs).
Methods: We studied MxCre Notch1lox/lox mice (conditional knockout mice
without tissue-specific disruption of Notch1); mice with hepatocyte-spe-
cific knockout were created by crossing Notch1lox/lox with Alb-Cre+/¯ mice.
Portal vein pressure was measured; morphology of the hepatic vascula-
ture was assessed by histologic and scanning electron microscopy analy-
ses. We performed functional and expression analyses of isolated liver
cells.
Results: MxCre-induced knockout of Notch1 led to NRH, in the absence of
fibrosis, with a persistent increase in proliferation of LSECs. Notch1 dele-
tion led to de-differentiation, vascular remodeling of the hepatic sinusoi-
dal microvasculature, intussusceptive angiogenesis, and dysregulation
1 Department of Biomedicine, University Basel, Switzerland2 Institute of Anatomy, University Berne, Switzerland3 Institute of Pathology4 Division of Gastroenterology and Hepatology, University Hospital Basel, Switzerland;5 Ecole Polytechnique Fédérale de Lausanne, Swiss Institute for Experimental Cancer Research, Epalinges, Switzerland
of ephrinB2/EphB4 and endothelial tyrosine kinase. Time-course experi-
ments revealed that vascular changes preceded node transformation.
MxCre Notch1lox/lox mice had reduced endothelial fenestrae and developed
portal hypertension and hepatic angiosarcoma over time. In contrast,
mice with hepatocyte-specific disruption of Notch1 had a normal pheno-
type.
Conclusions: Notch1 signaling is required for vascular homeostasis of
hepatic sinusoids; it maintains quiescence and differentiation of LSECs in
adult mice. Disruption of Notch1 signaling in LSECs leads to spontaneous
formation of angiosarcoma, indicating its role as a tumor suppressor in
the liver endothelium.
Developmental Cell
Article
GLI3 Constrains Digit Numberby Controlling Both Progenitor Proliferationand BMP-Dependent Exit to ChondrogenesisJavier Lopez-Rios, 1 Dario Speziale, 1,5 Dimitri Robay, 1,5,6 Martina Scotti, 3,5 Marco Osterwalder, 1 Gretel Nusspaumer, 2
Antonella Galli, 1,7 Georg A. Holla ¨nder, 2,4 Marie Kmita, 3 and Rolf Zeller 1,*1Developmental Genetics, Department of Biomedicine2Department of Biomedicine and Children’s HospitalUniversity of Basel, 4058 Basel, Switzerland3Laboratory of Genetics and Development, Institut de Recherches Cliniques de Montre ´al, Montre al, Que bec H2W1R7, Canada4Developmental Immunology, Department of Pediatrics, University of Oxford, Oxford OX3 9DU, UK5These authors contributed equally to this work6Present address: Basilea Pharmaceutica International, 4005 Basel, Switzerland7Present address: Department of Medicine and Genetics & Development, Herbert Irving Comprehensive Cancer Center,Columbia University Medical Center, New York, NY 10032, USA*Correspondence: [email protected] 10.1016/j.devcel.2012.01.006
SUMMARY
Inactivation of Gli3 , a key component of Hedgehogsignaling in vertebrates, results in formation of addi-tional digits (polydactyly) during limb bud develop-ment. The analysis of mouse embryos constitutivelylacking Gli3 has revealed the essential GLI3 functionsin specifying the anteroposterior (AP) limb axis anddigit identities. We conditionally inactivated Gli3during mouse hand plate development, which un-coupled the resulting preaxial polydactyly fromknown GLI3 functions in establishing AP and digitidentities. Our analysis revealed that GLI3 directlyrestricts the expression of regulators of the G 1–Scell-cycle transition such as Cdk6 and constrains Sphase entry of digit progenitors in the anterior handplate. Furthermore, GLI3 promotes the exit ofproliferating progenitors toward BMP-dependentchondrogenic di�erentiation by spatiotemporallyrestricting and terminating the expression of theBMP antagonist Gremlin1 . Thus, Gli3 is a negativeregulator of the proliferative expansion of digit pro-genitors and acts as a gatekeeper for the exit tochondrogenic di�erentiation.
INTRODUCTION
Hedgehog signaling is a major regulator of organogenesis inboth vertebrate and invertebrate embryos ( Jiang and Hui,2008; Varjosalo et al., 2006 ). Analysis of Sonic Hedgehog(SHH) signaling has provided insights into how SHH orchestratesvertebrate limb bud development ( Chiang et al., 2001; Harfeet al., 2004; Riddle et al., 1993; Zeller et al., 2009 ). In the posteriormesenchyme, SHH is produced by the polarizing region (ZPA) to
control anteroposterior (AP) axis specification and proliferativeexpansion of mesenchymal progenitors together with FGF andWnt signals ( ten Berge et al., 2008; Towers et al., 2008; Zhuet al., 2008 ). All three types of signals stimulate the expressionofMycn , which appears to be a key regulator o� imb budmesen-chymal cell proliferation because its inactivation decreasesproliferation, resulting in smaller limb skeletal elements andsyndactyly ( Ota et al., 2007 ).SHH is part of a self-regulatory system that interlinks the ZPA
with the apical ectodermal ridge (AER) and controls limb budoutgrowth by coordinating BMP, FGF, and SHH signaling withthe clearance of retinoic acid from the distal mesenchyme(Probst et al., 2011; Zeller et al., 2009 ). A key node in this systemis the BMP antagonist Gremlin1 (GREM1), which keeps BMPactivity low during limb bud outgrowth ( Be nazet et al., 2009 ).This feedback signaling system is self-terminating, as (1) the ex-panding population of Shh descendants is refractory to Grem1expression ( Scherz et al., 2004 ), and (2) high AER-FGF signalinginhibits Grem1 expression in the distal mesenchyme ( Verheydenand Sun, 2008 ). AER-FGF signaling increases during limb budoutgrowth, which eventually inhibits Grem1 expression. Thistermination of Grem1 expression results in a renewed raise ofBMP activity ( Be nazet et al., 2009; Verheyden and Sun, 2008 ),which initiates condensation and chondrogenic di�erentiationof mesenchymal progenitors ( Bandyopadhyay et al., 2006; Piz-ette and Niswander, 2000 ). In digit primordia, di�erential BMPsignal transduction in the distal phalanx-forming region is likelyrequired to determine the definitive identities ( Suzuki et al.,2008; Witte et al., 2010 ).In vertebrates, the expression of SHH target genes is
regulated by the GLI1-3 transcription factors. In particular,SHH signal transduction at the primary cilia inhibits the proteo-lytic processing of GLI3 to a transcriptional repressor (GLI3R;Wen et al., 2010 ). This results in accumulation of GLI1-3 activa-tors in the posterior limb bud, whereas GLI3R is the predominantGLI isoform in the anterior mesenchyme ( Ahn and Joyner, 2004;Wang et al., 2000 ). A genome-wide screen for cis- regulatory
Developmental Cell 22 , 837–848, April 17, 2012 ª 2012 Elsevier Inc. 837
constrains S phase entry of digit progenitors in the anterior hand plate.
Furthermore, GLI3 promotes the exit of proliferating progenitors to-
ward BMP-dependent chondrogenic differentiation by spatiotemporally
restricting and terminating the expression of the BMP antagonist Grem-
lin1. Thus, Gli3 is a negative regulator of the proliferative expansion of
digit progenitors and acts as a gatekeeper for the exit to chondrogenic
differentiation.
DEPARTMENT OF BIOMEDICINE PUBLICATIONS 17
DBM Facts 2|2012 Department of Biomedicine
PNAS cgi/doi/10.1073/pnas.1108718109 IF 9,7
Protooncogene Ski cooperates with the chromatin-remodeling factor Satb2 in specifying callosal neurons
First insights into the molecular programs orchestrating the progression
from neural stem cells to cortical projection neurons are emerging. Loss
of the transcriptional regulator Ski has been linked to the human 1p36
deletion syndrome, which includes central nervous system defects. Here,
we report critical roles for Ski in the maintenance of the neural stem cell
pool and the specification of callosal neurons. Ski-deficient callosal neu-
rons lose their identity and ectopically express the transcription factor
Ctip2. The misspecified callosal neurons largely fail to form the corpus
callosum and instead redirect their axons toward subcortical targets. We
1 Institute of Physiology, Department of Biomedicine, University of Basel, Switzerland2 Institute of Cell Biology and Neurobiology, Neurocure Cluster of Excellence, Charité-Universitätsmedizin Berlin, Campus Mitte, Germany3 Institute of Anatomy and Cell Biology, Albert-Ludwigs-University Freiburg, Germany4 Biozentrum, University of Basel, Switzerland5 Department of Cancer Biology, Lerner Research Institute, Cleveland, OH 44195
identify the chromatin-remodeling factor Satb2 as a partner of Ski, and
show that both proteins are required for transcriptional repression of
Ctip2 in callosal neurons. We propose a model in which Satb2 recruits Ski
to the Ctip2 locus, and Ski attracts histone deacetylases, thereby enabling
the formation of a functional nucleosome remodeling and deacetylase
repressor complex. Our findings establish a central role for Ski–Satb2
interactions in regulating transcriptional mechanisms of callosal neuron
specification.
Constanze Baranek1, Manuela Dittrich1, Srinivas Parthasarathy2, Carine Gaiser Bonnon1,3, Olga Britanova2, Dmitriy Lanshakov2, Fatiha Boukhtouche4, Julia E. Sommer4, Clemencia Colmenares5, Victor Tarabykin2, Suzana Atanasoski1,3
European Cells and Materials Vol. 23 2012 (pages 222-236) IF 9,6
Influence of in vitro maturation of engineered cartilage on the outcome of osteochondral repair in a goat model
S. Miot1, W. Brehm2,5, S. Dickinson3, T. Sims3, A. Wixmerten1, C. Longinotti4, A.P. Hollander3, P. Mainil-Varlet2, I. Martin1
AbstractThis study was designed to determine if the maturation stage of engi-
neered cartilage implanted in a goat model of cartilage injury influences
the repair outcome. Goat engineered cartilage was generated from au-
tologous chondrocytes cultured in hyaluronic acid scaffolds using 2 d, 2
weeks or 6 weeks of pre-culture and implanted above hydroxyapatite/hy-
aluronic acid sponges into osteochondral defects. Control defects were
left untreated or treated with cell-free scaffolds. The quality of repair tis-
sues was assessed 8 weeks or 8 months post implantation by histological
staining, modified O’Driscoll scoring and biochemical analyses. Increasing
pre-culture time resulted in progressive maturation of the grafts in vitro.
After 8 weeks in vivo, the quality of the repair was not improved by any
treatment. After 8 months, O’Driscoll histology scores indicated poor car-
1 Departments of Surgery and Biomedicine, University Hospital Basel, Switzerland2 Osteoarticular Research Group, Institute of Pathology, University of Bern, Switzerland3 School of Cellular & Molecular Medicine, University of Bristol, UK4 Fidia Advanced Biopolymers (FAB), Abano Terme, Italy5 Surgical Veterinary Clinics, University of Leipzig, Germany
tilage architecture for untreated (29.7 ± 1.6) and cell-free treated groups
(24.3 ± 5.8). The histology score was improved when cellular grafts were
implanted, with best scores observed for grafts pre-cultured for 2 weeks
(16.3 ± 5.8). As compared to shorter pre-culture times, grafts cultured for
6 weeks (histology score: 22.3 ± 6.4) displayed highest type II/I collagen
ratios but also inferior architecture of the surface and within the defect,
as well as lower integration with native cartilage. Thus, pre-culture of en-
gineered cartilage for 2 weeks achieved a suitable compromise between
tissue maturity and structural/integrative properties of the repair tissue.
The data demonstrate that the stage of development of engineered car-
tilage is an important parameter to be considered in designing cartilage
repair strategies.
18 PUBLICATIONS DEPARTEMENT BIOMEDIZIN
DBM Facts 2|2012 Departement Biomedizin
Biomaterials 33 (2012) 5085–5093 IF 7,8
Enhancing the biological performance of synthetic polymeric materials by decoration with engineered, decellularized extracellular matrix Nasser Sadr1,2,3, Benjamin E. Pippenger1,2, Arnaud Scherberich1,2, David Wendt1,2, Sara Mantero3, Ivan Martin1,2,Adam Papadimitropoulos1,2
AbstractMaterials based on synthetic polymers can be extensively tailored in their
physical properties but often suffer from limited biological functional-
ity. Here we tested the hypothesis that the biological performance of
3D synthetic polymer-based scaffolds can be enhanced by extracellular
matrix (ECM) deposited by cells in vitro and subsequently decellularized.
The hypothesis was tested in the context of bone graft substitutes, using
polyesterurethane (PEU) foams and mineralized ECM laid by human mes-
enchymal stromal cells (hMSC). A perfusion-based bioreactor system was
critically employed to uniformly seed and culture hMSC in the scaffolds
and to efficiently decellularize (94% DNA reduction) the resulting ECM
while preserving its main organic and inorganic components. As com-
1 Department of Surgery, University Hospital Basel, Switzerland2 Department of Biomedicine, University Hospital Basel, Switzerland3 Bioengineering Department, Politecnico di Milano,Milan, Italy
pared to plain PEU, the decellularized ECM-polymer hybrids supported
the osteoblastic differentiation of newly seeded hMSC by upregulating
the mRNA expression of typical osteoblastic genes (6-fold higher bone
sialoprotein; 4-fold higher osteocalcin and osteopontin) and increasing
calcium deposition (6-fold higher), approaching the performance of ce-
ramic-based materials. After ectopic implantation in nude mice, the de-
cellularized hybrids induced the formation of a mineralized matrix posi-
tively immunostained for bone sialoprotein and resembling an immature
osteoid tissue. Our findings consolidate the perspective of bioreactor-
based production of ECM-decorated polymeric scaffolds as off-the-shelf
materials combining tunable physical properties with the physiological
presentation of instructive biological signals.
The Journal of Neuroscience April 18, 2012, 32(16):5654 –5666 IF 7,2
Neurogenic Subventricular Zone Stem/Progenitor Cells Are Notch1-Dependent in Their Active But Not Quiescent State
Onur Basak1,*, Claudio Giachino1,2,*, Emma Fiorini3, H. Robson MacDonald3, and Verdon Taylor1,2
The adult mammalian forebrain contains neural stem/progenitor cells
(NSCs) that generate neurons throughout life. As in other somatic stem
cell systems, NSCs are proposed to be predominantly quiescent and pro-
liferate only sporadically to produce more committed progeny. However,
quiescence has recently been shown not to be an essential criterion for
stem cells. It is not known whether NSCs show differences in molecular
dependence based on their proliferation state. The subventricular zone
(SVZ) of the adult mouse brain has a remarkable capacity for repair by
activation of NSCs. The molecular interplay controlling adult NSCs dur-
ing neurogenesis or regeneration is not clear but resolving these interac-
tions is critical in order tounderstand brainhomeostasisandrepair. Using
conditional genetics and fate mapping, we show that Notch signaling is
essential for neurogenesis in the SVZ. By mosaic analysis, we uncovered
1 Department of Molecular Embryology, Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany2 Embryology and Stem Cell Biology, Department of Biomedicine, University of Basel, Switzerland3 Ludwig Center for Cancer Research, University of Lausanne, Epalinges, Switzerland* These authors contributed equally to this work
a surprising difference in Notch dependence between active neurogenic
and regenerative NSCs. While bothactive and regenerative NSCs depend
upon canonical Notch signaling, Notch1-deletion results in a selective loss
of active NSCs (aNSCs). In sharp contrast, quiescent NSCs (qNSCs) remain
after Notch1 ablation until induced during regeneration or aging, where-
upon they become Notch1-dependent and fail to fully reinstate neuro-
genesis. Our results suggest that Notch1 is a key component of the adult
SVZ niche, promoting maintenance of aNSCs, and that this function is
compensated in qNSCs. Therefore, we confirm the importance of Notch
signaling for maintaining NSCs and neurogenesis in the adult SVZ and
reveal that NSCs display a selective reliance on Notch1 that may be
dictated by mitotic state.
DEPARTMENT OF BIOMEDICINE PUBLICATIONS 19
DBM Facts 2|2012 Department of Biomedicine
Cardiovascular Research (2012) 93, 454–462 IF 6,0
NOX2-derived reactive oxygen species are crucial for CD29-inducedpro-survival signalling in cardiomyocytes
Berit I. Rosc-Schlüter1, Stéphanie P. Häuselmann1, Vera Lorenz1, Michika Mochizuki1, Federica Facciotti2, Otmar Pfister1,3,Gabriela M. Kuster1,3
AimsThe highly expressed cell adhesion receptor CD29 (b1-integrin) is es-
sential for cardiomyocyte growth and survival, and its loss of function
causes severe heart disease. However, CD29-induced signalling in cardio-
myocytes is ill defined and may involve reactive oxygen species (ROS).
A decisive source of cardiac ROS is the abundant NADPH oxidase (NOX)
isoform NOX2. Because understanding of NOX-derived ROS in the heart
is still poor, we sought to test the role of ROS and NOX in CD29-induced
survival signalling in cardiomyocytes.
Methods and resultsIn neonatal rat ventricular myocytes, CD29 activation induced intracel-
lular ROS formation (oxidative burst) as assessed by flow cytometry
using the redox-sensitive fluorescent dye dichlorodihydrofluorescein di-
acetate. This burst was inhibited by apocynin and diphenylene iodonium.
Further, activation of CD29 enhanced NOX activity (lucigenin-enhanced
chemiluminescence) and activated the MEK/ERK and PI3K/Akt survival
pathways. CD29 also induced phosphorylation of the inhibitory Ser9 on
the pro-apoptotic kinase glycogen synthase kinase-3β in a PI3K/Akt- and
MEK-dependent manner, and improved cardiomyocyte viability under
conditions of oxidative stress. The ROS scavenger MnTMPyP or adenoviral
co-overexpression of the antioxidant enzymes superoxide dismutase and
catalase inhibited CD29-induced pro-survival signalling. Further, CD29-
induced protective pathways were lost in mouse cardiomyocytes defi-
cient for NOX2 or functional p47phox, a regulatory subunit of NOX.
Conclusionp47phox-dependent, NOX2-derived ROS are mandatory for CD29-induced
pro-survival signalling in cardiomyocytes. These findings go in line with
a growing body of evidence suggesting that ROS can be beneficial to the
cell and support a crucial role for NOX2-derived ROS in cell survival in the
heart.
1 Myocardial Research, Department of Biomedicine, University and University Hospital Basel, Switzerland2 Experimental Immunology, Department of Biomedicine, University and University Hospital
Basel, Switzerland3 Division of Cardiology, University Hospital Basel, Switzerland
Cardiovascular Research (2012) 93, 1–10 IF 6,0
T-cadherin attenuates insulin-dependent signalling, eNOS activation, and angiogenesis in vascular endothelial cells
AimsT-cadherin (T-cad) is a glycosylphosphatidylinositol-anchored cadherin
family member. Experimental, clinical, and genomic studies suggest a
role for T-cad in vascular disorders such as atherosclerosis and hyperten-
sion, which are associated with endothelial dysfunction and insulin resis-
tance (InsRes). In endothelial cells (EC), T-cad and insulin activate similar
signalling pathways [e.g. PI3-kinase (PI3K)/Akt/mammalian target of ra-
pamycin (mTOR)] and processes (e.g. angiogenesis). We hypothesize that
T-cad is a regulatory component of insulin signalling in EC and therefore a
determinant of the development of endothelial InsRes.
Methods and resultsWe investigated T-cad-dependent effects on insulin sensitivity using hu-
man EC stably transduced with respect to T-cad overexpression or T-cad
silencing. Responsiveness to insulin was examined at the level of effec-
tors of the insulin signalling cascade, EC nitric oxide synthase (eNOS)
activation, and angiogenic behaviour. Overexpression and ligation of
T-cad on EC attenuates insulin-dependent activation of the PI3K/Akt/
mTOR signalling axis, eNOS, EC migration, and angiogenesis. Conversely,
T-cad silencing enhances these actions of insulin. Attenuation of EC re-
sponsiveness to insulin results from T-cad-mediated chronic activation of
the Akt/mTOR-dependent negative feedback loop of the insulin cascade
and enhanced degradation of the insulin receptor (IR) substrate. Coim-
munoprecipitation experiments revealed an association between T-cad
and IR. Filipin abrogated inhibitory effects of T-cad on insulin signalling,
demonstrating localization of T-cad-insulin cross-talk to lipid raft plasma
membrane domains. Hyperinsulinaemia up-regulates T-cad mRNA and
protein levels in EC.
ConclusionT-cad expression modulates signalling and functional responses of EC to
insulin. We have identified a novel signalling mechanism regulating insu-
lin function in the endothelium and attribute a role for T-cad up-regula-
tion in the pathogenesis of endothelial InsRes.
1 Laboratory for Signal Transduction, Department of Biomedicine, Basel University Hospital, Switzerland
2 Division of Cardiology, Kantonsspital Luzern, Switzerland* These authors contributed equally to this work
Maria Philippova1,*, Manjunath B. Joshi1,*, Dennis Pfaff1, Emmanouil Kyriakakis1, Kseniya Maslova1, Paul Erne2,Thérèse J. Resink1,*
20 PUBLICATIONS DEPARTEMENT BIOMEDIZIN
DBM Facts 2|2012 Departement Biomedizin
The Journal of Biological Chemistry Vol.287, Number 13, March 23, 2012 IF 5,3
Proteasomal Inhibition Restores Biological Function of Mis-sense MutatedDysferlin in Patient-derived Muscle Cells*
Bilal A. Azakir, Sabrina Di Fulvio, Jochen Kinter, and Michael Sinnreich1
Dysferlin is a transmembrane protein implicated in surfacemembrane re-
pair of muscle cells. Mutations in dysferlin causethe progressive muscular
dystrophies Miyoshi myopathy, limbgirdle muscular dystrophy 2B, and
distal anterior compartmentmyopathy. Dysferlinopathies are inherited
in an autosomalrecessive manner, and many patients with this disease
harbormis-sense mutations in at least one of their two pathogenicDYSF
alleles. These patients have significantly reduced or absent dysferlin lev-
elsin skeletal muscle, suggesting that dysferlin encoded by mis-sense
alleles is rapidly degraded by the cellular quality control system. We rea-
soned that mis-sensemutated dysferlin, if salvaged from degradation,
might be biologically functional. We used a dysferlin-deficient human
myoblast culture harboring the common R555W mis-sense alleleand a
DYSF-null allele, as well as control human myoblast cultures harboring ei-
ther two wild-type or two null alleles. We measured dysferlin protein and
mRNA levels,resealing kinetics of laser-induced plasmalemmal wounds,
myotube formation, and cellular viability after treatment of the human
myoblast cultures with the proteasome inhibitors lactacystin orbort-
ezomib (Velcade). We show that endogenous R555Wmis-sense mutated
dysferlin is degraded by the proteasomalsystem. Inhibition of the protea-
some by lactacystin or Velcade increases the levels of R555W mis-sense
mutated dysferlin. This salvaged protein is functional as it restores plas-
mamembrane resealing in patient-derived myoblasts and reverses their
deficit in myotube formation. Bortezomib and lactacystin did not cause
cellular toxicity at theregimen used.Our results raise the possibility that
inhibition of the degradation pathway of mis-sense mutated dysferlin
could be usedas a therapeutic strategy for patients harboring certain dys-
ferlin mis-sense mutations.
*This work was supported by Myosuisse, Association Française contre les Myopathies, Muscular Dystrophy Association Canada-Amyotrophic Lateral Sclerosis Society Canada-Canadian Institutes of Health Research (MDAC-ALS-CIHR) Partnership, and the Swiss National Science Foundation.
1 Neuromuscular Research Group, Departments of Neurology and Biomedicine, University Hospi-tal and University of Basel, Switzerland
European Respiratory Journal 2012; 39: 705–711 IF 5,9
Cigarette smoke inhibits lung fibroblast proliferation by translationalmechanisms
Abstract:Cigarette smoke is a major cause of chronic obstructive pulmonary dis-
ease (COPD) and emphysema. Although cigarette smoke represses cel-
lular proliferation, the molecular mechanisms underlying this phenom-
enon are unknown. CCAAT/enhancer-binding proteins (C/EBPs) are key
regulators of cell cycle progression, differentiation and pro-inflammatory
gene expression, are regulated predominantly at the translational level
and may be involved in the pathogenesis of COPD. The aim of this study
was to assess the effect of cigarette smoke on proliferation and the ex-
pression and translational regulation of C/EBPα and C/EBPβ in nondis-
eased primary human lung fibroblasts.
Fibroblasts were exposed to cigarette smoke-conditioned medium (10%
and 20% for 24 h). Proliferation was determined by [3H]thymidine incor-
poration. Protein expression levels were determined by immunoblotting
and translation was monitored using a translation control reporter sys-
tem.
Cigarette smoke significantly reduced fibroblast proliferation and signifi-
cantly upregulated fulllength C/EBPα and C/EBPβ proteins due to a shift
in the translational control of CEBPA and CEBPB mRNAs. This shift involved
the re-initiation of mRNA translation via the regulatory upstream open
reading frame, which coincided with increased interleukin-8 release and
a decrease in functional elastin level.
These findings provide a novel mechanism to understanding the tissue
remodelling observed in the lungs of COPD patients.
1 Pulmonary Cell Research, Dept of Biomedicine, and2 Dept of Thoracic Surgery, University Hospital Basel, Switzerland.
N. Miglino1, M. Roth1, D. Lardinois2, C. Sadowski2, M. Tamm1 and P. Borger1
Cigarette smoke inhibits lung fibroblast
proliferation by translational mechanismsN. Miglino*, M. Roth*, D. Lardinois#, C. Sadowski#, M. Tamm* and P. Borger*
ABSTRACT: Cigarette smoke is amajor cause of chronic obstructive pulmonary disease (COPD) and
emphysema. Although cigarette smoke represses cellular proliferation, the molecular mechanisms
underlying this phenomenon are unknown. CCAAT/enhancer-binding proteins (C/EBPs) are key
regulators of cell cycle progression, differentiation and pro-inflammatory gene expression, are
regulated predominantly at the translational level and may be involved in the pathogenesis of COPD.
The aim of this study was to assess the effect of cigarette smoke on proliferation and the expression
and translational regulation of C/EBPa and C/EBPb in nondiseased primary human lung fibroblasts.
Fibroblasts were exposed to cigarette smoke-conditioned medium (10% and 20% for 24 h). Pro-
liferation was determined by [3H]thymidine incorporation. Protein expression levels were determined
by immunoblotting and translation was monitored using a translation control reporter system.
Cigarette smoke significantly reduced fibroblast proliferation and significantly upregulated full-
length C/EBPa and C/EBPb proteins due to a shift in the translational control of CEBPA and
CEBPB mRNAs. This shift involved the re-initiation of mRNA translation via the regulatory
upstream open reading frame, which coincided with increased interleukin-8 release and a
decrease in functional elastin level.
These findings provide a novel mechanism to understanding the tissue remodelling observed in
the lungs of COPD patients.
KEYWORDS: CCAAT/enhancer-binding protein-a and -b, cell proliferation, chronic obstructive
pulmonary disease, human lung fibroblast, mRNA translation control, smoke
Chronic obstructive pulmonary disease(COPD) is characterised by chronic inflam-mation of the lung and airway remodel-
ling, leading to a fixed narrowing of the smallairways and destruction of the alveolar wall(emphysema). Cigarette smoke is the main riskfactor for the development of the disease [1]. COPDis a global health problem that affects .10% of theworld population over the age of 40 yrs [2]. Themost widely accepted hypothesis to explain thepathology of COPD and emphysema is an imbal-ance of proteases and their inhibitors, which leadsto the degradation of elastin and other structuralcomponents of the lung tissue [3, 4]. In anothermodel of the disease, the loss of tissue in end-stageCOPD (emphysema) may derive from an imbal-ance of tissue turnover when proliferation is unableto compensate for tissue loss [5].
Lung fibroblasts maintain the integrity of the lungparenchyma as they contribute to the repair of lunginjuries through synthesis and secretion of themain components of the extracellular matrix, such
as proteoglycans and collagens. Importantly, lungfibroblasts also produce elastin, an essential com-ponent of the alveolar extracellular matrix thatprovides the lung tissue with elasticity [6]. Animpaired capacity of lung fibroblasts to executetissue repair has been found in COPD patients [7].Cigarette smoke inhibits proliferation of normalfibroblasts [8], induces cellular senescence [9] andinhibits alveolar repair [5].
In the context of tissue maintenance and cellproliferation, CCAAT/enhancer-binding proteins(C/EBPs) could be of interest. C/EBPs have bothstimulatory and inhibitory effects on the prolifera-tion of many cell types and appear to be crucial forthe regulation of inflammatory responses. C/EBPsare an important family of transcription factors thatregulate cell differentiation, cell cycle progressionand the expression of many cytokines and chemo-kines relevant to COPD and emphysema [10, 11]. Inaddition, C/EBPb was shown to inhibit the trans-cription of elastin [12] and was elevated in emphy-sema lungs [13]. In airway smooth muscle (ASM)
AFFILIATIONS
*Pulmonary Cell Research, Dept of
Biomedicine, and#Dept of Thoracic Surgery, University
Hospital Basel, Basel, Switzerland.
CORRESPONDENCE
N. Miglino
Pneumology, Pulmonary Cell
Research, Dept of Biomedicine
University Hospital Basel
Hebelstrasse 20
CH-4031 Basel
Switzerland
E-mail: [email protected]
Received:
Nov 09 2010
Accepted after revision:
Aug 09 2011
First published online:
Aug 18 2011
European Respiratory Journal
Print ISSN 0903-1936
Online ISSN 1399-3003
Earn CME accreditation by answering questions about this article. You will find these at the back of the printed copy of this
issue or online at www.erj.ersjournals.com/misc/cmeinfo.xhtml
EUROPEAN RESPIRATORY JOURNAL VOLUME 39 NUMBER 3 705
Eur Respir J 2012; 39: 705–711
DOI: 10.1183/09031936.00174310
Copyright�ERS 2012
c
DEPARTMENT OF BIOMEDICINE PUBLICATIONS 21
DBM Facts 2|2012 Department of BiomedicineDBM Facts 2|2012 Departement of Biomedicine
DEPARTMENT OF BIOMEDICINE ART 21
The Editorial Teamof DBM Factswishes all itsreaders nice
summer holidays!
DBM Facts 2|2012 Departement Biomedizin
22 EINTRIT TE | NEW COLLEAGUES DEPARTEMENT BIOMEDIZIN
Diego CalabreseHepatology
Ilona KrólHepatology
DEPARTEMENTBIOMEDIZIN
HEBELSTRASSE
Ronny NienholdExp. Hematology
DEPARTEMENTBIOMEDIZIN
KLINGELBERG-STRASSE
Jan SchulzCellular Neurophysiology
Marielle BrockhoffNeuromuscular Research
Sophia ThaneiClin. Immunology
Camille VivianiCellular Neurophysiology
Rubén LopezPerioperative Patient Safety
Ori RokachPerioperative Patient Safety
DBM Facts 2|2012 Department of Biomedicine
DEPARTMENT OF BIOMEDICINE EINTRIT TE | NEW COLLEAGUES 23
DEPARTEMENT BIOMEDIZIN HEBELSTRASSE
Maumita BhattacharjeeTissue EngineeringSilvana BöschImmunonephrologyLaura BinkertInner Ear ResearchAlessia RamseierInner Ear ResearchCorinna BildlAnimal Care
Sarah DimeloeImmunobiologyMarco FischerImmunobiologyAudrey FrachetSignalingNicholas SandersonClin. NeuroimmunologyOndrej StepanekTransplantation ImmunologySébastien WieckowskiCancer Immunology
DEPARTEMENT BIOMEDIZIN KLINGELBERGSTRASSE
Liyi LiCellular NeurophysiologyDieter KunzSynaptic Plasticity
Ausserdem haben angefangen:
Am 1. Juni 2012 hat Mike Abanto seine Tätigkeit als Biooptiker am DBM Hebelstrasse begonnen.
Mike hat an der Tufts University und der University of Utah in den USA studiert und anschlies-
send bei Pico Caroni am FMI promoviert. Die Mikroskopie ist sein Leben, man kann aber auch
sehr gut mit ihm über Rugby (das er professionell betrieben hat), Klettern, Bergsteigen, Ski-
fahren, Tauchen und was die Sportwelt sonst noch so hergibt philosophieren … Wir wünschen
Mike viel Erfolg und Freude bei seiner neuen Tätigkeit!
Heidi Hoyermann
Michael Abanto neuer Biooptiker
Die Arbeit läuft dir nicht davon, wenn du deinem Kind einen Regenbogen zeigst.Aber der Regenbogen wartet nicht, bis du mit der Arbeit fertig bist.
Unbekannt
DBM Facts 2|2012 Departement Biomedizin
24 BABYS DEPARTEMENT BIOMEDIZIN
CongratulationsDas DBM gratuliert ganz herzlich!
Mats Fritz KarowGeboren am 08.04.2012
Levi NeumannGeboren am 16.03.2012
Noah Pietro MiglinoGeboren am 18.04.2012
DBM Facts 2|2012 Department of Biomedicine
DEPARTMENT OF BIOMEDICINE BABYS 25
Herzlich willkommen,
allerseits!
Timothée CastetsGeboren am 12.03.2012
DBM Facts 2|2012 Departement Biomedizin
26 FREIZEIT / FREETIME DEPARTEMENT BIOMEDIZIN
TriathlonIt is hard to believe, but triathlon was only included as an “official” Olympic sport in 2000. As the Olympics are fast approaching, so is the anticipation of the 2012 gold medallists. The first Olympic winners of the mens’ and womens’ triathlon events were Simon Whitfield of Canada and Brigitte McMahon of Swit-zerland. Their performances on that day were a result of years of steady training and racing; they made tria-thlon look easy. However, most people see a triathlon and underestimate its difficulty. The arduousness lies in optimising each component so that there is no weakness in any one of the three events, and once optimised the ability to race at threshold level (or the point just below puking, in layman’s terms). Before I get into the specifics of triathlon I will give an overview of the general components of the sport first.
Triathlon consists of sequentially swimming, biking, and running without any breaks. The races range from 1–17 hours and there are four distances that competitors can participate in: a sprint distance (750
m swim, 20 km bike, 5 km run), Olympic distance (1.5 km swim, 40 km bike, 10 km run), half Ironman (1.9 km swim, 90 km bike, 21 km run), and full Ironman (3.8 km swim, 180 km bike, 42 km run). The momentary respite between events is called a transition and is known as the fourth stage of any triathlon. In the early development of a triathlete’s career these periods act as a momentary pause to catch one’s breath as the wetsuit is removed, the bike helmet is put on, and the shoes are changed. During the first couple of races of a triathlete’s career several minutes are lost, but by the time a competitor reaches an elite level, the racer will have perfected the first transition down to approximately 50 seconds and the second transition to 35 seconds.
A race at the amateur level will begin either at 7 or 8 on a Sunday morning. This is primarily so that that the bike course can be completed on “quiet” roads, or at least roads with very few cars on them. Prior to a race there is a buzz at the headquarters. Competi-
Swim start of Ironman Canada
DBM Facts 2|2012 Department of Biomedicine
DEPARTMENT OF BIOMEDICINE FREIZEIT / FREETIME 27
tors need to arrive at least 1.5 hours before the start to allow time to “check-in”, attach race numbers to race belts and bikes, find the area in race transition for the bike, lay-out all equipment that will be needed for the race, fill-up water bottles, attach timing chips to ankles, put-on the wetsuit, and then wait. Waiting is by far the most difficult aspect as nerves can take over, but generally the moment of anxiety is fleeting as races begin on time. However, there was one occa-sion that a race that I participated in was delayed by two hours because of fog on the water, this was the Ironman.
The Ironman is the biggest of the triathlon events and as Ironman triathletes like to say “it is a long day at the office’ since the race begins at 7 AM and finishes at midnight. Each event has a cut-off time; if one doesn’t complete the section in the allotted time then the competitor is asked to discontinue. The 3.8 km swim is given 2 hours and 20 minutes, although most athletes will complete this in approximately one hour. The bike portion must be completed by 5 PM the same day, meaning if one is a good swimmer one can use the “extra” time to complete the bike portion. Generally, the 180 km cycle course is com-pleted in 5-6 hours. The final 42.2 km marathon must be completed by midnight, or in the case of Ironman Switzerland, by 11 PM. The competitors crossing the line just before the cut-off time get as much cheering from the spectators as the race winners. I knew a competitor who crossed the line of Ironman France at 11:59:42 PM!
Preparations for these events usually begin up to a year in advance as one has to build up the training gradually. This is not only to prevent injury, but also to prevent mental burn-out from the sheer volume of training required. During this time one has to learn what it feels like to cope with tired muscles, constant hunger, and constant fatigue. In addition, it is impor-tant to practice “eating” while in constant motion. One might think that is a silly thing to practice, but funny things start to happen to the stomach after several hours of constant activity and finding foods/liquids/gels that do not give you a stomach ache is a feat in itself. In these types of races it is always important to
keep “the tank topped-up” meaning that if you find yourself hungry or thirsty you are closer to dehydra-tion than you think. You would be amazed how many competitors one sees after these races in the medical tents with i.v. drips attached to them!
The first time I participated in an Ironman was Iron-man Canada in 2001. Triathlon was becoming more popular and entrance to these races was becoming difficult to obtain. I had travelled out the year before to cheer on my friends in the race of 2000 so that I could be in line for the sign-up for the following year. The race of 2000 was memorable primarily because the day had started with hot, bright sunshine, but by the time the competitors had cycled to the moun-tain summit there was snow and medical tents were set-up for hypothermia. Seeing these events unfold showed me that partaking in this type of event should not be taken lightly.
The start time of Ironman Canada 2001 was 7 AM sharp, but the race officials wanted competitors to be there for a 6 AM race briefing and a 6:30 AM “lock-in”. This was a pen, by the water’s edge, where the competitors waited for the sound of the canons to start the race. Transition set-up for these big events is done the day before, so on race morning all I had to do was pump my tires, prepare my energy drink bottles, and make sure the clothing that I needed after each event was ready. The atmosphere was electric as the two thousand competitors with their friends and sup-porters were all there. Music was blaring, the sun was shining, and the anticipation was building. All of the year’s previous hard work was going to culminate in this race. It was going to be a good day!
Waiting for half an hour for the biggest race of your life is not easy, nor is it easy for the other 1999 competi-tors beside you. It is really important at the start of any Ironman to not swallow the lake water when there is a mass start. Can you guess why? The moment the canons sound a mob situation occurs. This is by far the scariest part of any Ironman because the more people around you in the water, the more kicking and punching that occurs. Goggles fly off, swimmers are pushed underwater; the whole process is scary. It is
DBM Facts 2|2012 Departement Biomedizin
28 FREIZEIT / FREETIME DEPARTEMENT BIOMEDIZIN
important to keep calm and remain strong and always look for clear water. The buoys that signify the turn-around are usually at the other end of the lake and are difficult to find. Swimmers follow the feet of the per-son in front and this creates a massive vacuum that makes the swimming easier. Lifeguards in canoes signify the perimeter of the swim area. Reaching the turn-around point is also intense as many swimmers merge around one buoy. There are usually divers at these congestion points underneath the water to ensure that no one drowns. Once the congestion clears one just gets on with it and finishes swimming. By the time you see the shore you are ready for a change of activity.
Swimming continuously for over an hour can make one dizzy and at the exit of the swim there are people to help you keep your balance. First thing that many competitors do is guzzle a cola once the wetsuit has come off. This is not only for the sugar content, but the acidity does a pretty good job at killing anything that you may have swallowed in the water. You will never taste a cola as good as this in your life. Once changed, it is on to the bike for the next 5-6 hours.
The biggest problem with the 180 km bike course is boredom and coping with the numerous mood swings that one experiences while riding alone for many hours. At the beginning everything is new and invigorating because one is excited to be on the bike and not swimming! Unfortunately, by the fourth hour this novelty has worn-off. Your body hurts, you’re tired of the food that you are snacking on, and you keep asking yourself “why am I doing this?” However, despite that, Ironman racing is a fantastic way to see a country and these bike courses have allowed me to see places of Canada, Switzerland, UK, and Austria that I never would have seen otherwise.
The last 20 km of the bike are generally the hardest, but in the case of Ironman Canada it was all downhill. We had three mountains to climb on that course and that had taken some of the monotony out of being on the bike for so long. I was riding slower than the men I had been training with, but several had to stop or drop-out because of bike mechanical issues that had been caused because of a vandal who decided to put tacks on the road. One has to be prepared not only for the proper functioning of your own body, but that of
Bike transition of Ironman Canada
DBM Facts 2|2012 Department of Biomedicine
DEPARTMENT OF BIOMEDICINE FREIZEIT / FREETIME 29
your bike as well. There are “feed” stations along the course consisting of bags that have been pre-packed by yourself for food that you may need at the halfway point of the bike. There is also a “mechanical” van that drives around the course, but with hundreds of competitors to look after it is often quicker to repair your own flats or broken chains.
Arriving into transition for the marathon is exciting. Like the swim, one is very happy to get-off the bike and have a change in activity. Crowds are cheering and this is usually the time when the first male pro is finishing the run. It is a bit disheartening when one sees the race winner finishing the marathon when one is just about to begin it. Like the biking section, the first half of the marathon is fun. There are lots of people around and one can usually pair up with other runners for support; this removes some of the bore-dom. In addition, the feeding stations along the run route also have tonnes of supporters to encourage the runners. In the case of Ironman Canada, the run was along a lake. It was an out-and-back so you could see exactly how close your nearest competitor was. When I started the marathon it was 35°C without any
shade. It was imperative to be shielded from the sun, reapply sunscreen, and be constantly hydrated. The most difficult part was the last 10 km. I could smell greasy fries and all I wanted was to taste some. This was also the point at which I saw Sister Madonna Buder who is also known as the “Iron Nun”. At the time she was a 71 year old multiple Ironman record holder for her age group and it was remarkable to see someone that age participating in this event.
By the last 2 km I heard the cheers of the crowd that spurred me on to finish the race. In Ironman it doesn’t matter if you finished first or last; the crowd cheers each competitor the same. As I approached the last kilometre I saw my family and friends cheering me and heard the announcer say “Congratulations! You are an Ironman!” After crossing the finish line everyone is quickly given a medical check and then whisked away for a massage and pizza. The soreness and tiredness remains for a few weeks as well as the hunger, but in the end it is all worth it because you are an Ironman!
Brynn Kvinlaug
Race winner of Ironman Canada
DBM Facts 2|2012 Departement Biomedizin
30 SEASON DEPARTEMENT BIOMEDIZIN
Wien ist andersEs ist Freitag, 14.00 Uhr – endlich Wochenende, nichts wie raus aus dem Büro. Ich lasse in gutem Wiener Stil alles stehen und liegen – eine der ersten Fertigkeiten, die ich hier gelernt habe. Es gibt nichts, aber auch gar nichts, was nicht warten könnte bis Montag. Nur keinen Stress aufkommen lassen, das wird sich schon auch noch nächste Wochen ausge-hen. Jetzt erst mal ins wohl verdiente Wochenende: Ausspannen, Geniessen. Eine Freundin aus der Schweiz hat sich angekündigt. Wir werden einige ihrer Lieblingsbeisln und -orte unsicher machen, auf jeden Fall viel essen und trinken, wir sind schliesslich in Wien, wo das zu (fast) jeder Tages- und Nachtzeit in über 4000 Lokalen in 23 Bezirken möglich ist.
Endlich ist der lang ersehnte Frühling da. Ich schlendre vom Büro in der Gonzagagassen durch den Tiefen Graben Richtung Freyung in der Wiener Altstadt zu einem meiner vielen Lieblingsschani-gärten. Nach endlosen Winterwochen wolkenver-hangenen Himmels sauge ich die Sonnenstrahlen dieses warmen Tages in mich auf. In der Trafik ums Eck kaufe ich die neueste Wochenausgabe des Fal-ters für die Übersichtsliste mit dem Veranstaltungs-programm der Stadt und die fachkundigen Artikel und Kommentare zu den neuesten Politskandalen.
Obwohl die Bedienung im Kaffeehaus im Schotten-stift wie hier vielerorts nicht zu gebrauchen ist, lockt der ruhige Gastgarten im Hinterhof. Ribisel- und Mohntorten zählen zu den besten der Stadt, und das entschädigt fast für das schlamperte Personal. Ich sitze vor einer Melange mit Milchschaum anstelle des traditionellen Schlagobers und lese kopfschüt-telnd im Falter über eine Staatsanwaltschaft, die der Bundesjustizministerin weisungsunterstellt ist; über im Ministerium liegen gebliebene oder verlo-ren gegangene und dadurch verjährte Beweisakten im Zusammenhang mit brisanten Politikeraffären
der letzten Jahre; über die Lockerung des Anti-Korruptionsgesetzes, damit Geschäftsgeschenke, wie Eintrittskarten zu den Salzburger Festspielen, wieder verschickt werden können; über die For-derung der Kritiker nach mehr Rechtsstaatlichkeit. Österreich ist eine Bananenrepublik, die mit Vor-liebe Freunderlwirtschaft betreibt; und die Wiener betonen immer wieder, dass in ihrer Stadt der Bal-kan anfängt.
Spätestens jetzt bin ich reif für einen Almdudler, oder vielleicht doch eher einen Radler oder Aperol Spritz. Dafür schau ich, ob im Café Korb um diese Zeit noch ein Tisch zu ergattern ist. Auf jeden Fall
Hofburg
DBM Facts 2|2012 Department of Biomedicine
DEPARTMENT OF BIOMEDICINE SEASON 31
muss ein Schoko-Palatschinken her. Aber vorher könnte ich jetzt eigentlich noch einen Zwiebelrost-braten mit Nockerln und dazu ein Achterl Veltliner nehmen. Oder doch ein Gulasch mit Knödln, Eier-schwammerln oder Fleckerln? Wiener Schnitzel geht eh immer.
«Wie wär’s mit einem Eis beim Bortolotti in der Mariahilfer Strasse?», fragt meine Freundin, «Ich fahr mit einem City Bike rüber.» Sie sitzt im CAT auf dem Weg vom Flughafen Schwechat in die Stadt. Da ich draussen im 17. Bezirk wohne, logiert sie lieber in ihrer heiss geliebten grosszügigen Ferienwoh-nung, die eine Wiener Freundin von mir vermietet - eine traumhafte typische Wiener Altstadtwohnung mit Blick auf den Prater und das Riesenrad, ein Kat-zensprung vom Zentrum entfernt. «Wir könnten ausgiebig Shoppen, beim Café Ritter reinschauen, runter ins MuseumsQuartier, vielleicht ins Glazis, gehen. Und falls wir dann noch Lust haben, im Bohème am Spittelberg ein paar Arien reinziehen.» Das tönt nach einem gut Wienerischen Samstags-programm. Abends beglücken wir dann die Bon-bonniere Bar, die Wein-Bar beim Rathaus und die Urania-Bar und enden auf dem Weg nach Hause im 2. Bezirk im Künstlerviertel um den Karmeli-termarkt auf ein Fluchtachterl im Skopik & Lohn, bevor wir völlig erschöpft in die Federn sinken.
Da das sommerliche Wetter anhält, ist Auskatern im geräumigen Schanigarten des Café Dommayer angesagt – die Adresse für die besten Kuchenstücke in ganz Wien. Wir befinden uns im distinguierten teuren grünen 13. Aussenbezirk Hietzing – ein Dorf in der Stadt, wie eigentlich jeder Bezirk in Wien ein Dorf – ein Grätzel – mit ganz eigener Atmosphäre, typischen Bewohnern und Gepflogenheiten ist. In Hietzing trifft sich die Wiener High Society und wer gern dazu gehören möchte; man ist hier wer und zeigt es offenherzig mit viel Nerz und Klun-kern. Ich verschlucke mich fast, als zwischen all den Schickimickis, dem Herrn Hofrat, der Frau Ober-studienrätin und dem Mag. Dr. XY, plötzlich die Literaturnobelpreisträgerin, Elfriede Jelinek, per-sönlich an unserem Tisch vorbeischwebt mit der ihr eigenen Eleganz, die so weit entfernt ist vom
Wiener hoch gestylten Frauendurchschnitt. Meine Freundin erblasst ehrfürchtig und findet es einfach leiwand in dieser dörflichen Weltmetropole.
Kein Hietzing-Besuch ohne ein dunkles Seidel beim Brandauer. Wir schauen amüsiert zu, wie die Pief-kes am Nachbartisch genüsslich eine der grössten Portionen Spare-Ribs der Stadt verzehren. Seit ich hier lebe hat sich mein Fleischkonsum mindestens verdoppelt und ist im Vergleich zu einem Wie-ner immer noch eher bescheiden. Am Nebentisch zur andern Seite jammern schlecht gelaunte Wie-ner über die Kürzung der Mindestsicherung. Tat-sächlich gibt es jetzt anstatt 855 nur noch 773 Euro monatlich – das Ganze bei einer Armutsschwelle von 1’031 Euro und Arbeitslosigkeit von 9%. Meine Freundin kann das fast genauso wenig glauben wie die Tatsache, dass durch alle Bildungsschichten der durchschnittliche Gehaltsunterschied zwischen Männern und Frauen bis zu über 50% betragen kann. Zudem sitzen nur gerade 13% der Frauen in Führungspositionen mit Entscheidungskompe-tenzen. Und noch weniger glaubt sie, dass sie für den gleichen Job in der Schweiz mindestens das Doppelte bis fast Dreifache verdient.
In der Ausgangspassage des Brandauers locken die Schlossstubn und ein gutes Glasl Prosecco
Riesenrad
DBM Facts 2|2012 Departement Biomedizin
32 SEASON DEPARTEMENT BIOMEDIZIN
direkt vom Fass. Weil das so spottbillig ist, bleibt es natürlich nicht bei dem einen. Amüsiert beobach-ten wir die aufgedonnerten Wasserstoffblondinen mit den Versace-Handtaschen auf den Barhockern, die sich von ihren ausgedehnten Shopping-Trips erholen und schon mal auf den Abend einstim-men. Im Verlauf der nächsten Stunden werden sich hier Szenen abspielen, die man sonst nur in Soap Operas zu sehen bekommt: Leute werden sich furchtbar betrinken, die Ladies werden auf ihren High Heels nur mit Mühe und wenig graziös zur Toilette schwanken. Paare werden sich formieren, unverhohlen anfangen, miteinander zu flirten und schliesslich zu knutschen, um sich kurze Zeit später neu zu formieren. Ganze Beziehungsdramen wer-den inszeniert, angestachelt von Neid und Rachege-lüsten. Beste Freundinnen spannen sich die Männer gnadenlos vor der Nase aus. Der Speichelaustausch gewisser Personengruppen in dieser Bar kann an einem Abend enorm sein. Wiener Mann und Frau genieren sich wenig, man sieht das nicht so eng und nimmt es noch weniger ernst. Wien ist freizügig – nicht nur am stadteigenen FKK-Strand entlang der Donau.
Wir lassen den Tag mit einem Spaziergang im nahen wunderschönen weitläufigen Schlosspark von Schönbrunn ausklingen. Die Zeit reicht wie-der einmal nicht fürs magische Palmenhaus und auch nicht für den Tierpark. Wir lassen den Abend ausklingen mit dem Blick über die Stadt vom Gar-ten der Villa Aurora aus, vor uns auf den Tellern Cordon bleus mit griechischer und asiatischer Füllung, gefolgt von einem Kaiserschmarrn. Bald schon heisst es Abschied nehmen und in dem bin ich schon ganz gefühlsbetont wienerisch: Es geht fast nicht, es bricht mir das Herz. Fremde brauchen eine Weile, bis sie in Wiener Herzen aufgenommen werden, aber wenn sie mal drin sind, gibt es kein Entrinnen mehr. Mein Abschiednehmen dauerte nach zwei Jahren in Wien doppelt so lange als beim Wegzug von Basel von all meinen Freunden und Bekannten, die ich schon seit Urzeiten kenne. Spä-testens seither weiss ich: Wien ist einfach anders! Denise Berger
Texterklärungen und Anmerkungen:
Allgemeines:
etwas geht sich aus: etwas lässt sich (zeitlich) erledigen
Beisl: Kneipe
Wien hat 23 Bezirke, alle mit eigenem Bezirkswappen und Geschichte: www.wien.gv/at/bezirke/bezirkswappen; sie sind ungefähr kreisförmig im Uhrzeigersinn um die Stadtmitte ange-legt, 21. und 22. Bezirk liegen über der Donau im Nordosten; die Nummern in der Postleitzahlmitte zeigen jeweils den Bezirk an: 1010 = 1. Bezirk, 1130 = 13. Bezirk etc.
Trafik: zu vergleichen mit unseren Kiosk-Läden, haben ein ähn-liches Warenangebot; gibt es an vielen Strassenecken, oft direkt auch bei Eingängen der U-Bahnstationen auf der Seite (oft so klein, dass man sie fast übersieht). Dort bekommt man auch Parkscheine.
Falter: linksliberale Wochenzeitung mit detailliertem Veranstal-tungsprogramm für Wien und Umgebung; sehr guter, hochste-hender investigativer Journalismus, Mitbegründer und Chefre-dakteur: Armin Thurnher.
Schanigarten: vor den Gastronomiebetrieben auf dem Trottoir (Gehsteig) aufgestellte Tische und Stühle oder ein Gastgarten im Hinterhof; die verordnete Schanigartensaison läuft max. vom 1. März bis 15. November
Schlampert: österr. abwertend gebraucht für: nicht sorgfältig, ungenau, nachlässig
Rathaus
DBM Facts 2|2012 Department of Biomedicine
DEPARTMENT OF BIOMEDICINE SEASON 33
bau), Tel. 01 5265660; in diesem 7. Bezirk tummeln sich zwischen MuseumsQuartier, Spittelberg, Neubaugasse und Urban-Loritz-Platz die jungen Kreativen, Selbstständigen und Studierenden: Man nennt das Neubau-Grätzel der neuen Bourgeois Bohemi-ans daher auch Boboville.
Edelbeisl Bohème, Spittelberggasse 19, 7. Bezirk (Neubau), Tel. 01 5233173, mit viel Opernmusik als Beschallung und signierten Starfotos an den Wänden
Beisl und Bar Skopik & Lohn, Leopoldsgasse 17, 2. Bezirk (Leo-poldstadt), Tel. 01 2198977
Brandauers Schlossbräu, Am Platz 5, 13. Bezirk (Hietzing), Tel. 01 8795970
Beisl Villa Aurora: Wilhelminenstr. 237, 16. Bezirk (Otlakring), Tel. 01 489 33 33, durchgehend warme Küche, beste Cordon bleus der Stadt mit kreativen Füllungen. Der Ausblick über die Stadt lohnt sich.
Kaffeehäuser:
In Wiener Kaffeehäusern sitzt man für gewöhnlich lange und ausgiebig, studiert die aufliegenden Zeitungen, liest Bücher oder betätigt sich als Schriftsteller, ohne besonders viel konsu-mieren zu müssen. Neben viel Kaffee wird meist durchgehend traditionelle Wiener Küche serviert. Eine sehr kleine Auswahl:
Café im Schottenstift, Schottengasse 2, 1. Bezirk (Innere Stadt), Tel. 01 535155013
Künstlercafé Korb, Brandstätte 9, 1. Bezirk (Innere Stadt),Tel. 01 5337215
Café Ritter, Mariahilfer Strasse 73, 6. Bezirk (Mariahilf),Tel. 01 587 82 38
Café Dommayer, Dommayergasse 1, 13. Bezirk (Hietzing),Tel. 01 87754650
Bars:
Bar Schlossstubn, Am Platz 2, 13. Bezirk (Hietzing), Nähe Sei-tenausgang Schlosspark Schönbrunn - preiswertester guter Pro-secco vom Fass, Glas 1.80 Euro
WIENO: Wiener Weinbar, neben Rathaus in Lichtenfelsgasse 3, 1. Bezirk (Innere Stadt), 60 Weine von 18 Wiener Winzern (es gibt Rebberge mitten in und um die Stadt herum, am besten unternimmt man eine Wanderung: http://www.wien.gv.at/umwelt/wald/freizeit/wandern/wege.html)
Bar Urania, Uraniastrasse 1, 1. Bezirk (Innere Stadt),Tel. 01 7133066
Pianobar Bonbonniere, Spiegelgasse 15, 1. Bezirk (Innere Stadt), Tel. 01 512 68 86, älteste Bar im Herzen von Wien mit Original-ausstattung der 20er Jahre, mit Live-Klaviermusik
Buchtipp für politisch Interessierte: Michael Fleischhacker, «Politikerbeschimpfung», 176 Seiten, 22,00 Euro, ISBN: 978-3-902404-63-3
Anreise Flughafen-Stadtzentrum:
CAT: Mit Airport Shuttle direkt vom Flughafen Schwechat in 16 Minuten zur U-Bahnstation «Wien Mitte/Landstrasse», umstei-gen auf U3 Richtung Ottakring zum Steffl (Stephansdom) für 9 Euro die Einzelfahrt. Wer trotzdem lieber mit dem Taxi fährt, ruft Josef Haager an: +43 664 785 28 64.
Empfohlene Unterkunft: preiswerte wunderschöne Ferien-wohnungen von Susanne Tiefenbrunner direkt beim Prater, Ausstellungsstrasse 31, 1020 Wien,Mobil-Tel. +43 699 195 80 151,http://www.apartment.at/print/apartment/115
City Bike: www.citybikecard.at, es gibt viele über die Stadt ver-teilte Veloparkings mit Fahrrädern zum Ausleihen: 1. Stunde gratis, Tourist Card pro Kalendertag: 2 Euro; unbedingt sichere Fahrradrouten im Internet auskundschaften, da Radfahren in Wien ziemlich gefährlich sein kann. Die Autofahrer ignorieren Fahrradfahrer aus Prinzip - gilt übrigens auch umgekehrt.
Das Verwenden von akademischen Graden und Titeln jegli-cher Art kaschiert im konservativ-bürgerlich geprägten, wenig demokratisch orientierten Österreich die eigene Mediokrität und befriedigt die Eitelkeiten und basiert wohl auf einem tief sitzenden Minderwertigkeitskomplex. Üblich ist die unlogi-sche aufsteigende Reihenfolge, weil man keinen Titel weglassen möchte (Mag. Dr. XY) und die Verdopplung mit englischen Titeln am Schluss, wobei das für die so wichtige mündliche Anrede völlig ungeeignet ist. Gutes, durchaus realistisches und ernst gemeintes Beispiel: HR Univ.-Prof. Akad. Tourismusmanagerin Dr.phil. Maria Bauer, BSc MSc, will heissen: Frau Bauer ist Hof-rätin, Universitätsprofessorin, hat einen Unilehrgang zur Tou-rismusmanagerin sowie ein Doktorratsstudium, Bachelor- und Masterstudium absolviert. Zaghafte Emanzipierungsversuche zeigen sich in den weiblichen Formen wie Maga. für Magistra und Dr.in für Doktorin. Bachelor- und Masterabgänge sind trotz Bologna-Reform ganz frische «Babies» an den Universitäten und noch arg gewöhnungsbedürftig.
Leiwand: super
Piefke: abwertend gemeinte Bezeichnung für Deutsche, die in Österreich einen schweren Stand haben; im Vergleich dazu haben die Schweizer von vornherein einen Sympathiebonus und sind gern gesehen.
Kulinarisches:
Getränke:
• Almdudler: österr. Kräuterlimonade• Radler: Biermischgetränk aus Bier und (Zitronen-)Limonade, bei uns Panaché genannt • Aperol Spritz: erfrischender fruchtig-bitterer Aperitif-Likör, der mit Prosecco oder Weisswein gemischt wird• G’spritzter: Wein und Sodawasser• Achterl, Vierterl: Weinglasgrössen, als Fluchtachterl oder -vierterl wird das Glas vor dem Nachhause-Gehen bezeichnet • Wiener Melange: wird traditionell in einem hohen Stielglas serviert und besteht zu zwei Dritteln aus starkem schwarzem Bohnenkaffee und zu einem Drittel aus heisser Milch. Die Milch darf aber nicht gekocht sein. Darauf kommt eine grosszügige Portion Schlagrahm (Schlagobers), die mit etwas feingemahle-nem Kaffee bestreut wird.• Seidel: kann sich auf Bier und Wein beziehen, etwa 0.354 Liter
Essen:
• Ribisel: Johannisbeere• Palatschinken: Pfannkuchen mit verschiedenen Füllungen• Eierschwammerl: Pilzsorte• Knödl: geformte Teigkugeln aus verschiedensten Grundzu-taten (z. B. zerquetschte Kartoffeln, altbackenes Brot, Quark, Grieß), die in siedendem Wasser gegart werden und als deftige Beilage, Suppeneinlage oder süße Nachspeise gegessen werden• Fleckerl: Nudeln• Nockerl: Spätzle• Kaiserschmarrn: Pfannkuchenähnliche Süssspeise, serviert mit Zwetschkenrösta (=Pflaumenkompott)
Gelateria Paolo Bortolotti: bestes Eis der Stadt; entlang der Mariahilfer Strasse (Shopping-Strasse im 6. Bezirk) gibt es 3 Geschäfte, unbedingt das Mohneis probieren!
Restaurant Glacis im MuseumsQuartier oberhalb des MUMOK (Museum Moderner Kunst), Museumsplatz 1, 7. Bezirk (Neu-
DBM Facts 2|2012 Departement Biomedizin
34 FREIZEIT / FREETIME DEPARTEMENT BIOMEDIZIN
UrlaubslektüreJosé Saramago: Das Zentrum(Rowohlt, gebunden, 22.90 Euro)
Die ersten Zeilen höre ich mitten aus dem Buch he-raus. Als mein Mann mir, der das Buch gerade liest, für mich völlig aus dem Zusammenhang gerissen, wenige Zeilen vorliest, in denen ein Hund mit einer unglaublichen Einfühlsamkeit in die Geschichte ein-geführt wird. Später nehme ich mir das Buch und lese die erste Begegnung des alten Töpfers Cipriano Al-gor, der Hauptfigur des Buches, mit dem zugelaufe-nen Hund, der später Achado heissen wird, zu Ende. Ich bin elektrisiert von dieser Art des Erzählens, von dieser Kunstfertigkeit des Schreibens, fasziniert, wie Saramago es schafft, mich innerhalb von wenigen Zeilen, in die Hundehütte eines offenen Hofes einer kleinen Töpferei zu versetzen, in der der alte Cipria-no Algor am Rande eines portugiesischen Dörfchens
Kafka on the ShoreIf you like fiction, fantasy, mystery, original ideas and an unpredictable plot, then you will probably enjoy Haruki Murakami’s novel. You will enter into a unique dream-related atmosphere. Kafka on the Shore is an amazingly imaginative story compris-ing two distinct but interrelated plots, the life of a 15-year-old teenager Kafka and that of an old illit-erate man, Nakata. Both characters have their own quest (or are they the same?), both are trying hard to escape their fate.
Kafka runs away from his father's house to escape an oedipal curse and to go in search of his mother and sister, while the police begin inquiring after him in connection with a brutal murder.
Nakata, who has experienced a strange traumatic event in his childhood, lost many of his mental facul-ties but in their place is able to talk to cats. He knows he has a mission, ignores which one, but when the
time comes he will know exactly what to do.
In this novel, fishes fall from the sky, people collect cats’ souls, WWII sol-diers appear from forests, people commit murder and then are unsure if they commit-ted it. Murakami mixes suspense, humour and refers all the time to both the real and the surreal so that you are not sure which world you are in.
Murakami’s metaphoric writing is all about human condition and the (non)sense of life. As so, Kafka on the Shore poses more questions than he answers, creates more puzzles than he solves. And it is just fun! Let your imagination combine several of these riddles and finish the story any way you wish. Bon voyage!
Anne-Catherine Feutz
seinem Handwerk nachgeht. Keine Bange, dieses Buch ist nicht sen-timental. Es ist auch keine dog-matische Auseinandersetzung des Marxisten Saramago mit dem The-ma Arbeit. Es ist die einfühlsam erzählte Geschich-te eines alten Töpfers, der seine Waren irgendwann nicht mehr dem hypermodernen Einkaufszentrum verkaufen kann, da Plastik besser als Ton zu sein scheint. Eines alten Töpfers, der sich auf seine Weise dagegen wehrt. Ein Buch nicht nur für den Portugal-urlaub, sondern für alle, die nach den Ferien zurück in ihr «Zentrum» gehen.
Heidi Hoyermann
DEPARTMENT OF BIOMEDICINE FREIZEIT / FREETIME 35
DBM Facts 2|2012 Department of Biomedicine
Room by Emma Donoghue“Jack is five, and excited about his birthday. He lives with his Ma in Room, which has a locked door and a skylight, and measures eleven feet by eleven feet” (at just under 3 metres by 3 metres, that’s small!) “He loves watching TV, and the cartoon characters he calls friends, but he knows that nothing he sees on screen is truly real – only him, Ma and the things in Room. Until the day Ma admits that there’s a world outside.”Having read the above blurb on the back of the book, I decided that this was not a book I would ever want to read. So what if it was a runner up for the Mann Booker prize (the UK’s major book award) in 2011? It looked as if it was going to be 320 pages on a hor-rible theme that I would find far too distressing. Yet I did read Room and now I’m recommending it to you as a summer read, and even an on the beach read! I was “persuaded” to try the first couple of chapters
Have you been to Hyperion?Dear DBM reader, let me start with a question. Do you like books AND science fiction? Are you desperately looking for a sense of wonder, that precious feeling invoked by the sudden understanding of new concepts & ideas? If your answer is YES, than I may have the right book for you. It is the classic novel Hyperion written by Dan Simmons. The story is set in a far-future galaxy where humanity is scattered across hundreds of worlds, following the “Big Mistake” which destroyed Old Earth, all con-nected by wormhole technology and united under the Hegemony. This vast empire is under threat by the Ousters, interstellar rebel humans mutated beyond recognition, who dwell free of and beyond the bounds of the Hegemony. On the eve of galactic war, the book follows the journey of seven pilgrims (the Priest, the Soldier, the Poet, the Templar, the Detective, the Con-sul, the Scholar and his little daughter) who are trav-elling on Treeship Yggdrasill to the distant planet Hyperion in order to visit The Time Tombs (ancients structures that move backwards through time), con-front their deadly guardian (a mysterious creature known as The Shrike) and hopefully help to pre-
and keep an open mind, and I re-luctantly agreed. Once I started reading, I wanted to finish the book in one sitting. It made me smile, then made me weep and then made me smile again. I was devastated and then uplifted and can’t remember when a book last took me on such a rollercoaster ride. It’s also written in straightforward English sentences and so just flowed along. “When it’s over you look up: the world looks the same but you are somehow differ-ent and that feeling lingers for days,” commented one reviewer and she’s absolutely right.Written in Jack’s voice, Room is the story of a mother and son whose love lets them survive. As it’s difficult to say much else without spoiling the plot, I’ll just say “this is definitely one you should read.”
Hilary Ireland
vent the total destruction of human civilization. During the journey, the pilgrims tell the stories of their lives. Each tale has an extremely different mood and atmosphere, giving the entire book a beautiful, patchwork sort of feel. The stories contain first con-tact mission, military SF, literary symbolism, colonial rebellion, cyberpunk, hard-boiled detective story, a touch of horror, and beautifully written stories of per-sonal tragedy. This is not a collection of unrelated tales. Far from it. After the first few stories you will start to see deeper patterns and sense the hidden forces coming together. You will witness the effects of one story on another and feel the storm gathering. And most of all, you will begin to understand that Hype-rion is the one wild card which could shift the balance of mankind's fate one way or another, and somehow these pilgrims hold the key...I have nothing left to say. See for yourself. Take this book, turn the first page and start your pilgrimage.
Lucia Kubovcakova
DBM Facts 2|2012 Departement Biomedizin
36 INFORMATIK / INFORMATICS DEPARTEMENT BIOMEDIZIN
Einbau Kit um das optische Laufwerk durcheine 2. Harddisk oder SSD zu ersetzen
LMP Disk Doubler ist ein Konverter (Einbau-) Rahmen für MacBook und MacBook Pro Unibody, um anstelle desoptischen Laufwerks eine zweite SATA Harddisk oder zusätzlich eine SSD einzubauen. Fast alle MacBook undMacBook Pro Unibody werden unterstützt.
Eine empfehlenswerte Konfiguration ist eine super schnelle SSD (500 MB/Sek. mit SATA 6 Gb/s SSD der neuestenGeneration) mit einer standard Harddisk zu kombinieren. Oder die Kapazität durch zwei 1 TB Harddisk auf maxi-male 2 TB zu erweitern und eine Harddisk als Time Machine Backup zu verwenden. Auch eine Datenspiegelungmit dem Apple System Utility wird dadurch möglich.
Das ausgebaute DVD Laufwerk kann in ein preisgünstiges USB Gehäuse eingebaut werden. Damit steht dasDVD Laufwerk auch nach Ausbau extern zur Verfügung.
LMP Disk Doubler
• Konverter (Einbau-) Rahmen für weitere Harddisk oder SSD(2.5” SATA HDD/SSD, 9.5 mm Bauhöhe, ersetzt optisches Laufwerk)
• Alle MacBook und MacBook Pro Unibody Modelle (ab Late 2008)
• SSD 6 Gb/s (500 MB/Sek. Datendurchsatz) anstelle der Harddisk installieren und dann diese Harddisk anstelledem optischen Laufwerk (nur SATA Anschluss der internen Harddisk hat 6 Gb/s Interface)
• Installations-Werkzeug im Lieferumfang enthalten.
• Der Einbau durch einen Apple Techniker dauert ca. 30 Minuten.
Artikel Enduser CHF8% MWSt
LMP Disk Doubler, Einbau Kit für 2. Harddisk/SSD (2.5”; statt DVD Laufwerk)für alle MacBook & MacBook Pro Unibody 9414 68.–
LMP Gehäuse für DVD Laufwerk aus MacBook, MB Pro Unibody & Mac mini, USB 2.0 9413 38.–
LMP Disk Doubler Bundle, Kit für 2. HD/SSD (statt DVD) MacBook & MB Pro& externes USB-DVD Gehäuse [Art. 9414 & 9413] 9415 98.–
LMP Disk Doubler für MB & MacBook Pro
Disk DoublerKonverter (Einbau-) Rahmen
Gehäuse (5.25”) fürDVD Laufwerk, USB 2.0
Distribution: Cropmark AGJurastrasse 56, CH-5430 WettingenFon +41 (0)56 437 60 70, Fax +41 (0)56 437 60 77www.cropmark.ch, [email protected]
cropmark ag
2.01, 6/2012, CH
News from the DBM-iT
EndNote X5Infolge der Kooperation zwischen der Uni und den USB kann EndNote als Lizenz für 30.00 CHF bezogen werden. Die aktuelle Version heisst X5 und ist für OSX 10.6/10.7 und für Windows7/Vista/XP verfügbar.PRISM und FlowJo Sobald wir unsere neuen iMac's erhalten, werden wir FlowJo und PRISM auf den öffentlichen iT Rechnern im 3.OG des ZLF installieren. Somit können dort auch diese
CD/DVD-Drives werden immer seltener benötigt. Gehören Sie auch zu den Benützern die nur einmal im Quartal eine CD lesen müssen? Dann haben wir etwas, das Sie sich
beiden Programme benützt werden.Weiterhin ist auch das gesamte Adobe Creative Suite installiert.Umbauaktion
anschauen oder bestellen sollten.
Zur Zeit können wir die aufgeführten SSD 2.5" Drives zu folgenden Preisen bestellen:•120 GB OCZ Agility3 SSD MLC SATA, 6 Gb/Sek,, 500Mb/Sek. 130.00•240 GB OCZ Agility3 SSD MLC SATA, 6 Gb/Sek,, 500Mb/Sek. 265.00•480 GB OCZ Agility3 SSD MLC SATA, 6 Gb/Sek,, 500Mb/Sek. 635.00Rechenbeispiel:Sie wollen die interne bestehende HD weiterhin benützen und zusätzlich noch das interne DVD Laufwerk in ein externes USB2.0 Gehäuse umbauen lassen? Dann wählen Sie eine der obigen SSD Platten und addieren die 98.00 CHF dazu.Sollten Sie Interesse an einer solchen Lösung haben, so fragen Sie uns einfach an. Anfagen bitte an [email protected] oder an [email protected] mit dem Betreff "DiskDoubler Umbau".
DBM Facts 2|2012 Departement Biomedizin
… erfahren wir von Verdon Taylor mehr über Neuronal Stem Cells
… führt uns Nicole Schaeren-Wiemers in die Welt der Neurobiology ein
... lernen wir mit Michael Abanto,worauf es beim Rugby ankommt
… lassen wir den Sommer Revue passieren mit den schönsten Fotos vom DBM Barbecue
… entführt uns Arun Cumpelik in seine Heimatstadt Prag
H I F - 1
IGFREGFR
ROSstabilization
PI3K
NO
IFN
R
IFN-
TNF-
?
IL-4
IL-4 /
13 R
JAK1 / 3
P
STAT6 P
PP
STAT6
STAT6
- “Th2 response”- response to oxidative stress- neuroprotective mechanism- anti-apoptotic mechanisms
Ausfahrt
Berggipfel erglühen,Waldwipfel erblühenVom Lenzhauch geschwellt;Zugvogel mit SingenErhebt seine Schwingen;Ich fahr’ in die Welt.
Mir ist zum GeleiteIn lichtgoldnem KleideFrau Sonne bestellt;Sie wirft meinen SchattenAuf blumige Matten;Ich fahr’ in die Welt.
Mein Hutschmuck die Rose,Mein Lager im Moose,Der Himmel mein Zelt;Mag lauern und kauernWer will, hinter Mauern;Ich fahr’ in die Welt.
Joseph Victor von Scheffel (1826–1886)