YAMBASE Phenotyping Workflow

Demo

YamBase

Add Accessions

YamBase

Add Accessions

YamBase

Add Accessions

YamBase

Add Accessions

YamBase

Add Accessions

YamBase

Available Cross types

YamBase

Create a Cross

YamBase

Create a Cross

YamBase

Create a Cross

YamBase

Create a Cross

YamBase

Create list of selected progenies

YamBase

Create list of selected progenies

YamBase

Make a list of traits

YamBase

View lists of accessions and traits

YamBase

Available trial types

YamBase

Create a trial

YamBase

Create a trial

YamBase

Create a trial

YamBase

Create a trial

YamBase

Create a trial

YamBase

Create a field book layout file

YamBase

Fieldbook app tools

YamBase

Fieldbook app info and download

YamBase

Android FieldBook App download

YamBase

Download fieldbook layout file

YamBase

Create fieldbook trait file

YamBase

Download fieldbook trait file

YamBase

Downloaded files

YamBase

Tablet drive

YamBase

Tablet drive: fieldbook directory

YamBase

Copy layout file into field_import directory

YamBase

Copy trait file into trait directory

YamBase

Fieldbook App

YamBase

Import layout

YamBase

Import layout

YamBase

Import traits

YamBase

Import traits

YamBase

Import traits

YamBase

Import traits

YamBase

Add profile

YamBase

Start phenotyping

YamBase

Export phenotype file

fieldbook_demo.mp4

YamBase

Copy export phenotype file

YamBase

Upload exported phenotype

YamBase

Upload exported phenotype

YamBase

View uploaded phenotype

YamBase

Upload field Map

View file format

YamBase

Field map file format Prepare: 85_layout.txt - Excel Save: 85_layout.txt - Excel

YamBase

Upload field Map

YamBase

View field Map

● Create a biparental cross with 12 progenies ● Create a list of accessions on the cross detail page● Create a list of traits with the wizard● Make a trial with the list of accessions● Create a fieldbook layout file from the trial● Download fieldbook layout file● Create a fieldbook trait file from the list of traits● Download the trait file.● Transfer layout and trait files to the tablet● Import layout and trait files into Fieldbook App● Record some data● Export the data from the fieldbook and transfer back to the computer● Upload the fieldbook phenotypes to YamBasease● Upload the trial coordinates for the created trial

Exercises

YamBase

YAMBASE Creating Genotyping Trials

YamBase

Create genotyping trial

YamBase

Create genotyping trial

YamBase

Create genotyping trial

YamBase

Create genotyping trial

YamBase

Create genotyping trial

YamBase

YAMBASE Uploading Historic Trials

YamBase

Phenotyping workflow

Accessions To Be Tested

Trial Creation

Fieldbook Creation

Traits List Creation

Phenotyping

Import and Setup Trial in

Fieldbook App.

Transfer files to Nexus Tablet

&

Export Phenotype

Upload Phenotype

YAMBASE.ORG

Historic Phenotype Upload

YamBase

Trial upload

YamBase

Trial upload

YamBase

Trial upload

YamBase

Trial upload

YamBase

View uploaded trial

YamBase

View uploaded trial

YamBase

Upload phenotype for uploaded trial

YamBase

Upload phenotype for uploaded trial

YamBase

Upload phenotype for uploaded trial

YamBase

Upload phenotype for uploaded trial

YamBase

View uploaded phenotype

YamBase

Used files

FIELD LAYOUT FILE PHENOTYPE FILE

Acknowledgements

Lukas Mueller

BryanEllerbrock

NaamaMenda

IsaakTecle

NickMorales

Guillaume Bauchet

BMGF

THANK YOU.