xgen® lockdown® products for next generation sequencing
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xGen® Lockdown® products for next generation sequencing
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xGen® Lockdown® Probes are individually synthesized nucleic acids for target enrichment• In-solution hybridization probes• 120-nucleotide DNA oligos with a 5′ biotin modification• Synthesized using IDT’s proprietary Ultramer® synthesis process to ensure
more full-length product• Individual synthesis offers more flexibility than array synthesis offered by
other manufacturers
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• Filter out unwanted sequences• Focus only on the regions of interest• Increase depth of coverage
Begin with prepared library (using e.g., Illumina TruSeq® HT kit or Ion Torrent®
library prep kit).
A simple target capture workflow facilitates focused sequencing
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Various formats of xGen® Lockdown® Probes to suit individual sequencing needs• Design fully customized panels
– xGen Lockdown Probes• Create panels from predesigned probe pools
– xGen Predesigned Gene Capture Pools
• Select from stocked, validated panels:– xGen Exome Research Panel– xGen AML Panel– xGen Pan-Cancer Panel– xGen Inherited Diseases Panel
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xGen® Lockdown® Probes allow cost-effective target enrichment using fully custom panels
Size Scale (pmol) Reactions/probe
Mini 3 1
Standard 24 8
XL 192 64
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1. Visit www.idtdna.com/xGen.2. Select “Learn more about xGen Lockdown Probes”.3. Click “Create Design”.
Easy ordering with an intuitive online tool
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In a single, streamlined transaction, order xGen Lockdown Reagents, hybridization and wash buffers optimized for xGen Lockdown Probes.
Ordering tool streamlines the process for purchasing required reagents
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• Illumina• Ion Torrent• Custom
Select specific adapter blockers for the appropriate sequencing platform or design custom blockers
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What are xGen® Predesigned Gene Capture Pools?
• Versatile pools of xGen® Lockdown® Probes designed to target specific genes
• Allow fast and easy custom panel design• Delivered combined in a single tube • Available for 16 or 96 reactions• Shipped in solution and ready to use
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Features of xGen® Predesigned Capture Pools
• Target coding regions (CDS) of human RefSeq genes• Designed with repeat masking and 1X tiling• Flat price:
– US$100/gene for 16 reactions– US$150/gene for 96 reactions
• Ship in 7–10 days
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xGen® Lockdown® Panels allow efficient targeted sequencing for specialized areas of research
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Inventoried panels No. of gene targets
Span of human genome (Mb) Shipment
Acute Myeloid Leukemia 264 1.2 Dried down
Pan-Cancer 127 0.8 Dried down
Inherited Diseases 4,503 12 Dried down
Exome Research 19,396 39 In solution
• Uniformity of coverage is a requirement to ensure reliable sequencing data from target capture
• Deep coverage with high uniformity provides greater confidence in calling rare events
• High uniformity allows multiplexing of more samples because sequencing reads do not have to be sacrificed to overcome poor uniformity
High coverage uniformity of xGen® Lockdown® Panels increases multiplexing capacity and reduces cost
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• Consistent results from multiple experiments– 9 libraries sequenced in pools of 3
show little variation in overall coverage• Confidence in calling germline mutations
– >98% of target bases covered at 20X– >96% of target bases covered at 30X
• Excellent depth of coverage achieved without sacrificing sequencing reads– 50M reads per sample
The xGen® Exome Research Panel provides consistent, deep coverage over targeted regions
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100 million reads
xGen® Exome Research Panel provides deeper coverage than array-synthesized probes from 2 different sources
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40 million reads
Advantages of xGen® Lockdown®
Probes
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• High uniformity allows capture of regions of high or low GC content
• Uniformity is a product of:– Individual probe synthesis using
IDT proprietary platform– Individual mass spec
measurement– Individual OD measurement
xGen® Lockdown® Probes provide more uniform coverage than array-synthesized probes
16[Data courtesy of Genoptix, Inc.]
xGen® Lockdown® Probes and Panels allow complete flexibility in panel composition• Supplement panels with additional xGen Lockdown Probes to capture
more targets• Combine panels to meet changing project needs
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Custom panels designed using xGen® Lockdown® Probes are shipped within 2 weeks
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IDT turnaround time
Competitors’ turnaround time
Target capture can be completed in 1 day with xGen®
Lockdown® Probes and Reagents
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Questions?
www.idtdna.com/xGen
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• qPCR and PCR amplification
• Gene regulation and knockdown
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• Oligo dilution and resuspension
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Begin designing at
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