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Cellular and Tissue Engineering BIOM9333
Table of Contents
1. INTRODUCTION TO CELLULAR AND TISSUE ENGINEERING ........................................... 4
1.1. Components of tissue engineering system ................................................................................................ 4
1.1.1. Cell source ................................................................................................................................................ 5
1.1.2. Molecules ................................................................................................................................................. 7
1.1.3. Scaffolds ................................................................................................................................................... 8
1.2. Tissue engineering strategies .................................................................................................................... 9
1.2.1. Application of isolated cells ..................................................................................................................... 9
1.2.2. Delivery of cell/tissue inducing agents .................................................................................................. 10
1.2.3. Delivery of cells within matrices (scaffolds) .......................................................................................... 10
1.3. Tissue engineered products ..................................................................................................................... 10
1.4. Obstacles of Tissue engineering .............................................................................................................. 11
1.5. Conclusion ............................................................................................................................................... 11
2. CELL BIOLOGY — STRUCTURE AND FUNCTION ................................................................ 12
2.1. Type of cells ............................................................................................................................................ 12
2.2. Common cell structure ............................................................................................................................ 13
2.2.1. Biomembranes ....................................................................................................................................... 13
2.2.2. Endosome .............................................................................................................................................. 13
2.2.3. Lysosome ............................................................................................................................................... 13
2.2.4. Peroxisome ............................................................................................................................................ 13
2.2.5. Endoplasmic reticulum (ER) ................................................................................................................... 14
2.2.6. Golgi complex ........................................................................................................................................ 14
2.2.7. Nucleus .................................................................................................................................................. 14
2.2.8. Mitochondria ......................................................................................................................................... 14
2.2.9. The cytoskeleton: components and structural functions ...................................................................... 16
2.3. Cell cycle ................................................................................................................................................. 16
2.3.1. Cell division ............................................................................................................................................ 18
2.3.2. Cell death ............................................................................................................................................... 19
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2.4. Molecular motors and the mechanical work of cells ............................................................................... 19
2.4.1. Molecular motors .................................................................................................................................. 19
2.4.2. The mechanical work of cells ................................................................................................................. 20
3. ESSENTIALS BIOCHEMISTRY ................................................................................................... 21
3.1. Chemical building blocks of cells ............................................................................................................. 21
3.1.1. Proteins .................................................................................................................................................. 21
3.1.2. Nucleic acids .......................................................................................................................................... 23
3.1.3. Polysaccharides ...................................................................................................................................... 29
3.2. Membrane Transport .............................................................................................................................. 29
3.2.1. Passive diffusion .................................................................................................................................... 29
3.2.2. Membrane proteins mediate transport ................................................................................................. 30
3.2.3. Osmotic Pressure ................................................................................................................................... 31
4. EXTRACELLULAR MATRIX SCAFFOLDS ................................................................................ 32
4.1. ECM components .................................................................................................................................... 32
4.1.1. Fibrous proteins ..................................................................................................................................... 32
4.1.2. Non-fibrous – Proteoglycans ................................................................................................................. 34
4.2. Integrin-containing adhesive structures .................................................................................................. 37
4.3. Focal adhesion ........................................................................................................................................ 37
4.4. Cell Junctions .......................................................................................................................................... 38
4.4.1. Tight Junctions ....................................................................................................................................... 38
4.4.2. Anchoring junctions ............................................................................................................................... 38
4.4.3. Communicating Junctions ...................................................................................................................... 38
4.5. Cell Locomotion ...................................................................................................................................... 39
5. CELL LINEAGE ............................................................................................................................... 40
5.1. Evolution of a cell line: ............................................................................................................................ 40
5.2. Advantages and disadvantage of tissue Culture ...................................................................................... 41
5.3. Initiation of cell culture ........................................................................................................................... 41
6. POLYMERIC SCAFFOLDS FOR TISSUE ENGINEERING ...................................................... 43
6.1. Biomaterials for tissue engineering ......................................................................................................... 43
6.2. Properties/design criteria for polymers in tissue engineering ................................................................. 43
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6.3. Classification of polymers........................................................................................................................ 44
6.4. Crosslinking ............................................................................................................................................. 45
6.5. Polymer degradation ............................................................................................................................... 45
6.5.1. Degradation types.................................................................................................................................. 45
6.5.2. Results of Degradation........................................................................................................................... 46
6.5.3. Degradation Factors............................................................................................................................... 46
7. CLINICAL APPLICATION ............................................................................................................ 47
7.1. Developing a clinical produce .................................................................................................................. 47
7.1.1. Define the clinical problem .................................................................................................................... 47
7.1.2. Preclinical trial 1: tissue culture testing ................................................................................................. 47
7.1.3. Preclinical trial 2: using animal models .................................................................................................. 47
7.1.4. Clinical trials ........................................................................................................................................... 48
7.2. Tissue regeneration ................................................................................................................................. 49
7.2.1. Factors limiting regeneration................................................................................................................. 49
7.2.2. Regenerative tissue................................................................................................................................ 49
7.3. Product development .............................................................................................................................. 50
7.3.1. Production issues ................................................................................................................................... 50
7.3.2. Examples of current tissue engineering products ................................................................................. 51
7.3.3. Market for tissue engineering products ................................................................................................ 51
7.3.4. Obstacle/challenges of tissue engineering ............................................................................................ 52
7.3.5. Future direction ..................................................................................................................................... 52
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1. Introduction to Cellular and Tissue Engineering
Tissue engineering is the persuasion of the body to heal itself through the delivery to appropriate sites
of molecular signals, cells and supporting structures.
“Tissue engineering is the creation of new tissue for the therapeutic reconstruction of the human body,
by the deliberate and controlled stimulation of selected target cells through a systematic combination of
molecular and mechanical signals” — David F. William
Cellular engineering is the engineering principle and method to understand the biology of cells.
The traditional way of repairing damages on our body is through using medical device(s) that is tailored
to the application based mainly on its mechanical aspects. Problems arise from implantable medical
devices as they are inert, non-responsive to the dynamics ever changing environment of the human
body.
The idea of using tissue engineering (TE) is to persuasion of the body to heal itself using cells, molecules
and scaffolds without implanting any foreign materials. As these implants may wear out before we die
with the increasing mortality rate. The need of TE also due to shortage of donor tissue and organs;
reduction in healing ability caused by conditions such as obesity and osteoporosis; and with no good
alternative therapies are available to repair injuries.
1.1. Components of tissue engineering system
Figure 1.1 Major component of tissue engineering – cells, scaffolds, molecules
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1.1.1. Cell source
Animal
Animal cells are easy sources but there are issues when implanting into humans due to risk of
infections by prion abnormal proteins. In order to use these cells, immunoisolation is usually
required and functional use is not incorporated into the body. E.g. β – cells for pancreas
Human
Differentiated
Autologous cells harvested from foetal and adult tissues/organs such as fibroblasts from skeletal
muscle or spinal cord and chondrocyte. These cells can be used as factories to produce other
types of cells.
Stem Cells
SCs can be derived from the bone marrow, adult tissue, foetal tissue, or embryos.
– Embryonic stem cells
Embryonic stem cells are pluripotent stem cells derived from early embryo, eight cell
stage (blastocyst). Only embryonic SCs are totipotent (potential to develop into ANY cell
type), while the rest are pluripotent (specialized, but have the potential to develop into
a cell type in the same family e.g. blood stem cells).
Advantage: high rate of self renewal can be stimulated to form specific cell types.
Disadvantage: requires presence of feeder layers (usually made of animal cells which
may be transferred during implantation), ethical approval
Improvements: single cells have been able to be extracted from an embryo, allowing for
the embryo's continued survival and growth
– Adults stem cells
Bone marrow
Can be expanded in vitro
Multipotent i.e. differentiate into multiple mesenchymal cell types to form
tissues: cartilage, bone, blood, muscle
May differentiate into non-mesenchymal cell types: neurons, cardiac muscle,
liver
Bioreactors
For isolation, expansion and maintenance
Manipulation in vitro OR enhanced growth in vivo
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Figure 1.2 Cultured cells that have been derived from early human embryos may eventually be coaxed to develop into replacement tissue for a variety of damaged organs.
Figure 1.3 Mesenchymal stem cell
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Induced pluripotent stem cells (iPS)
iPS cells are pluripotent stem cells artificially derived from a non-pluripotent cell. They may allow
researchers to obtain pluripotent stem cells, which are important in research and potentially have
therapeutic uses, without the controversial use of embryos. They may also be less prone to immune
rejection than embryonic stem cells because of the fact that they are derived entirely from the patient.
However, there are still concerns of using retrovirus induced cells to become iPS cells may have the
potential forming teratoma.
Figure 1.4 Cells differentiated from iPS cells
1.1.2. Molecules
Molecules used for TE purposes tend to be growth factors and other such molecules that promote cell
division. Two examples are given as followed:
Vascular Endothelial Growth Factor (VEGF) which can be used to help vascularise heart tissue as an
alternative or in addition to bypass surgery. In the later case, a pellet of VEGF (in this case, VEGF-2) is
implanted into the heart tissue and stimulates the heart vessel to grow towards it.
Platelet Derived Growth Factor (PDGF) which can stimulate the growth of skin tissue, and therefore it's
often upon diabetic patients to fasten the skin repairing process. E.g. PDGF-
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1.1.3. Scaffolds
Human are 3D structures. The repair of the defect requires structure and dimensionality. In order to
achieve that scaffolds are required.
Biological: natural material, cell can interact with the material, can be recognised by cell, non-
toxic, usually poor mechanical properties, comes from biological systems will have batch to
batch variation
Synthetic: controllable and reproducible properties, not recognised by cells, toxicity (include
degraded product)
Design
− Biomimicry: copying nature, biological structures
− Intelligent materials
Surface modification (e.g. growth factors, adhesion molecules)
Bulk modification (e.g. add subunit in polymer can be degraded by biological enzymes)
Control releases (e.g. bioreceptors)
− Fabrication technology
Fused deposition modelling (FDM)
3D printing (bio-plotting)
Nano-spinning
− Biological architecture
Figure 1.5 intelligent materials
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Available scaffold materials
Natural (collagen, coral, chitosan)
Synthetic (PLA, polycaprolactone)
Composite (PLA/alginate)
Permanent
Degradable
Performance
Formed in tissue
1.2. Tissue engineering strategies
1.2.1. Application of isolated cells
Figure 1.6 cell sources for TE
Example: heart failure
Current therapies include medical approach (drugs), stents, grafts
Transplant not typically used but donor shortage is limiting (approx. 2,000 transplants per year
in the USA)
Damaged heart tissue does NOT regenerate
There is a clinical need for new ways of regenerating functioning heart muscle
E.g. Bioheart
− Isolated skeletal muscle myoblasts
− Regeneration of heart muscle
− Treatment for myocardium infraction
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1.2.2. Delivery of cell/tissue inducing agents
Engineer agent i.e. Growth factors (GF)
Deliver agent to target site
E.g. wound healing
skin wounds
platelet derived growth factor (PDGF-ββ)
Regranex
1.2.3. Delivery of cells within matrices (scaffolds)
Open system
Combine cells within scaffolds in a (OPEN) system in which cells are not isolated from host response
Strategy
Engineer scaffold
Combine with isolated cells
Expand in vitro
E.g. Cardiac patch, Orcel
Closed system
Combine cells with matrices in an encapsulated (CLOSED) system in which the immune system cannot
access cells, but necessary functions can continue combine cells with scaffolds in a system
Strategy
Engineer encapsulation/isolation system
Introduce isolated cells (Cell may not have to be autologous)
Systems can be:
− Implanted
− Used as extracorporeal devices
E.g. liver support, pancreas
1.3. Tissue engineered products Skeletal: bone, cartilage, meniscus
Cardiovascular: heart muscle, heart
valves, blood vessels
Skin
Cornea
Dentin
Liver
Pancreas
Kidney
Bladder
Intestine
Nerves
Ureter
Urethra
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1.4. Obstacles of Tissue engineering Vascularisation: most tissues will not grow more than 2mm in diameter without a blood supply
Xenotransplantation: transplantation of cells/tissues/organs from one species to another.
Problems involve rejection, differences in physiology and lifespan, zoonosis (disease
transmission) and various ethical issues.
Gene therapy
Regulatory / low liability
Market need
Financial issue
1.5. Conclusion
Great potential exists for engineered tissues in the treatment of human disease.
As TE products begin to enter the clinic, their future remains unclear.
Justifying cost based on need or superior performance will be key factor in success
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2. Cell Biology — Structure and Function
2.1. Type of cells
Prokaryotes
Before nucleus
Small, relatively simple cells. Most between 1µm and 10 µm
Single cell organisms
May not require oxygen
No organelles (with membranes)
E.g. bacteria, E. coil
Eukaryotes
True nucleus
Larger: 10-100 microns
Often multicellular
Organelles surrounded by membranes
Usually need oxygen
E.g. animals, plants and fungi
Figure 2.1 Prokaryotic cells (a) and eukaryotic cells (b)
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2.2. Common cell structure Take in raw material: nutrient, water, salt
Produce energy
Synthesis molecules
Organise growth
Ability to respond to internal and external changes
2.2.1. Biomembranes
Phospholipids of the composition present in cells spontaneously form sheetlike phospholipid bilayers,
which are two molecules thick. The hydrocarbon chains of the phospholipids in each layer, or leaflet,
form a hydrophobic core that is 3–4 nm thick in most biomembranes. The plasma membrane is made up
of phospholipid bilayer, and each organelle is surrounded by one or more biomembranes.
The lipid bilayer has two important properties,
1. The hydrophobic core is an impermeable barrier that prevents the diffusion of water-soluble
(hydrophilic) solutes across the membrane. Importantly, this simple barrier function is
modulated by the presence of membrane proteins that mediate the transport of specific
molecules across this otherwise impermeable bilayer
2. Stability of the bilayer, the bilayer structure is maintained by hydrophobic and van der Waals
interactions between the lipid chains. Even though the exterior aqueous environment can vary
widely in ionic strength and pH, the bilayer has the strength to retain its characteristic
architecture.
2.2.2. Endosome
Transport protein on the cell plasma membrane mediate the movement of ions and small molecules
across the lipid bilayer, proteins and some other soluble macromolecules in the extracellular milieu are
internalized by endocytosis
2.2.3. Lysosome
Lysosomes are acidic organelles that contain a battery of degradative enzymes, degrading certain
components that have become obsolete for the cell or organism.
Sacs of digestive enzymes budded off the Golgi
Fuse with membrane around debris
2.2.4. Peroxisome
Peroxisomes are a class of roughly spherical organelles, 0.2–1.0μm in diameter. They contain several
oxidases that use molecular oxygen to oxidize organic substances, in the process forming hydrogen
peroxide (H2O2), a corrosive substance. Peroxisomes also contain copious amounts of the enzyme
catalase, which degrades hydrogen peroxide to yield water and oxygen.
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2.2.5. Endoplasmic reticulum (ER)
Smooth endoplasmic reticulum
Synthesis of fatty acids and phospholipids, abundant in hepatocytes to modify or detoxify hydrophobic
chemicals such as pesticides and carcinogens by chemically converting them into more water-soluble,
conjugated products that can be excreted from the body
Packages proteins for transport,
Synthesizes membrane phosolipids
Releases calcium
Detoxification of foreign substances
Rough endoplasmic reticulum
Ribosomes bound to the rough ER synthesize certain membrane and organelle proteins and virtually all
proteins to be secreted from the cell.
Rough due to the presence of ribosomes
Membrane protein synthesis
Extracellular protein synthesis
2.2.6. Golgi complex
Flattened stacks of interconnected membranes
For packaging and distribution of materials to different parts of the cell
2.2.7. Nucleus
The largest organelle in animal cells, is surrounded by two membranes, each one a phospholipid bilayer
containing many different types of proteins. The nucleus is metabolically active, replicating DNA and
synthesizing rRNA, tRNA, and mRNA. Within the nucleus mRNA binds to specific proteins, forming
ribonucleoprotein particles. Most of the cell’s ribosomal RNA is synthesized in the nucleolus. Nuclear
DNA is packaged into chromosomes.
2.2.8. Mitochondria
The main sites of ATP production during aerobic metabolism, it is surrounded by a double membrane,
generate ATP by oxidation of glucose and fatty acids.
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Figure 2.2 ATP is the most common molecule used by cells to capture and transfer energy
ATP production
Figure 2.3 The binding-change mechanism of ATP synthesis from ADP and Pi by the F0F1 complex
Each of the F1 subunits alternate between three conformational states that differ in their binding
affinities for ATP, ADP, and Pi.
Step 1: After ADP and Pi bind to one of the three β subunits (here, arbitrarily designated β1) whose
nucleotide-binding site is in the O (open) conformation, proton flux powers a 120° rotation of the
subunit (relative to the fixed β subunits). This causes an increase in the binding affinity of the β1 subunit
for ADP and Pi to L (low), an increase in the binding affinity of the β3 subunit for ADP and Pi from L to T
(tight), and a decrease in the binding affinity of the β2 subunit for ATP from T to O, causing release of
the bound ATP.
Step 2: The ADP and Pi in the T site (here the β subunit) form ATP, a reaction that does not require an
input of energy, and ADP and Pi bind to the β2 subunit, which is in the O state. This generates an F1
complex identical with that which started the process (left) except that it is rotated 120°.
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Step 3: Another 120° rotation of again causes the O ⟶ L ⟶T ⟶ O conformational changes in the β
subunits described above. Repetition of steps 1 and 2 leads to formation of three ATP molecules for
every 360° rotation of
2.2.9. The cytoskeleton: components and structural functions
The cytosol is a major site of cellular metabolism and contains a large number of different enzymes.
Because of the high concentration of cytosolic proteins, complexes of proteins can form even if the
energy that stabilizes them is weak. The cytosol is highly organized with protein filaments, most soluble
proteins either bound to filaments or otherwise localized in specific regions.
Three types of filaments compose the cytoskeleton
Actin filaments (microfilaments)
− 8–9 nm in diameter
− Have a twisted two-stranded structure
− Supports cell shape, contraction and motility
Microtubules
− Hollow tubelike structures
− 24nm in diameter, whose walls are formed by adjacent protofilaments
− For intracellular transport
Intermediate filaments (IFs)
− 10-nm-diameter rope like structure
− Lend lateral strength to tissue, helps connect cells to tissue
2.3. Cell cycle The simplest type of reproduction entails the division of a parent cell into two daughter cells. A series of
events that prepares a cell to divide followed by the actual division process, called mitosis. Cell cycle
commonly is represented as four stages. The chromosomes and the DNA they carry are copied during
the S (synthesis) phase. The replicated chromosomes separate during the M (mitotic) phase, with each
daughter cell getting a copy of each chromosome during cell division. The M and S phases are separated
by two gap stages, the G1 phase and G2 phase, during which mRNAs and proteins are made. In single-
celled organisms, both daughter cells often (though not always) resemble the parent cell.
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Figure 2.4 During growth, eukaryotic cells continually
progress through the four stages of the cell cycle, generating new daughter cells.
In most proliferating cells, the four phases of
the cell cycle proceed successively, taking from
10–20 hours depending on cell type and
developmental state. During interphase, which
consists of the G1, S, and G2 phases, the cell
roughly doubles its mass. Replication of DNA
during S leaves the cell with four copies of each
type of chromosome. In the mitotic (M) phase,
the chromosomes are evenly partitioned to two
daughter cells, and the cytoplasm divides
roughly in half in most cases. Under certain
conditions such as starvation or when a tissue
has reached its final size, cells will stop cycling
and remain in a waiting state called G0. Most
cells in G0 can reenter the cycle if conditions
change
Figure 2.5 Current model for regulation of the eukaryotic cell cycle
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Passage through the cycle is controlled by G1, S-phase, and mitotic cyclin-dependent kinase complexes
(green). These are composed of a regulatory cyclin subunit and a catalytic cyclin-dependent kinase (CDK)
subunit. Two ubiquitin ligase complexes (orange), SCF and APC, polyubiquitinate specific substrates
including S-phase inhibitors (step 5), securin (step 8), and mitotic cyclins (step 9), marking these
substrates for degradation by proteasomes. Proteolysis of the S-phase inhibitor activates S-phase cyclin-
CDK complexes, leading to chromosome replication. Proteolysis of securing results in degradation of
protein complexes that connect sister chromatids at metaphase, thereby initiating anaphase, the mitotic
period in which sister chromatids are separated and moved to the opposite spindle poles. Reduction in
the activity of mitotic cyclin-CDK complexes caused by proteolysis of mitotic cyclins permits late mitotic
events and cytokinesis to occur. These proteolytic cleavages drive the cycle in one direction because of
the irreversibility of protein degradation. See text for further discussion
2.3.1. Cell division
Figure 2.6 The stages of mitosis and cytokinesis in an animal cell
(a) Interphase (G2): DNA and centrosome replication. After DNA replication during the S phase, the
chromosomes, each containing a sister chromatid, are decondensed and not visible as distinct structures.
By G2 the centrioles have replicated to form daughter centrosomes. (b) Prophase: centrosome migration.
The centrosomes, each with a daughter centriole, begin moving toward opposite poles of the cell. The
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chromosomes begin to condense, appearing as long threads. (c) Prometaphase: spindle formation. The
nuclear envelope fragments into small vesicles and spindle microtubules enter the nuclear region.
Chromosome condensation is completed; each visible chromosome is composed of two chromatids held
together at their centromeres. Kinetochores at centromeres attach chromosomes to spindle
microtubules. (d) Metaphase: chromosome alignment. The chromosomes move toward the equator of
the cell, where they become aligned in the equatorial plane. (e) Anaphase: chromosome separation. The
two sister chromatids separate into independent chromosomes. Each chromosome, attached to a
kinetochore microtubule, moves toward one pole. Simultaneously, the poles move apart. (f) Telophase
and cytokinesis. Nuclear membranes re-form around the daughter nuclei; the chromosomes
decondense and become less distinct. The spindle disappears as the microtubules depolymerize, and cell
cleavage proceeds. (g) Interphase (G1): Following cleavage, the daughter cells enter G1 of interphase
2.3.2. Cell death
Apoptosis is programmed cell death and is essential in controlling multicellular development
(during morphogenesis of human hand, apoptosis mediates separation of developing digits from
a fin-like bud). It is different from necrosis and intimately coupled to cell proliferation.
Necrosis is cell death from injury resulted from external environmental insult, which is a
pathological process. cells that undergo this process swell and burst, releasing their intracellular
contents, which can damage surrounding cells and frequently cause inflammation
The genes involved in controlling cell death encode proteins with three distinct functions:
Killer proteins are required for a cell to begin the apoptotic process.
Destruction proteins do things like digest DNA in a dying cell.
Engulfment proteins are required for phagocytosis of the dying cell by another cell
2.4. Molecular motors and the mechanical work of cells
2.4.1. Molecular motors
Specialized enzymes, motor proteins generate the forces necessary for many cellular movements. These
mechanochemical enzymes convert energy released by the hydrolysis of ATP or from ion gradients into
a mechanical force. Motor proteins generate either linear or rotary motion. Some motor proteins are
components of macromolecular assemblies, but those that move along cytoskeletal fibers are not. This
latter group comprises the myosins, kinesins, and dyneins—linear motor proteins that carry attached
“cargo” with them as they proceed along either microfilaments or microtubules. DNA and RNA
polymerases also are linear motor proteins because they translocate along DNA during replication and
transcription.
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Properties of motor proteins
The ability to transduce a source of energy, either ATP or an ion gradient, into linear or rotary
movement
The ability to bind and translocate along a cytoskeletal filament, nucleic acid strand, or protein
complex
Net movement in a given direction
2.4.2. The mechanical work of cells
Figure 2.7 Operational model for the coupling of ATP hydrolysis to movement of myosin along an actin filament
The cycle for a myosin II head that is part of a
thick filament in muscle, but other myosins that
attach to other cargo (e.g., the membrane of a
vesicle) are thought to operate according to the
same cyclical mechanism. In the absence of
bound nucleotide, a myosin head binds actin
tightly in a rigor state.
Step 1: Binding of ATP opens the cleft in the
myosin head, disrupting the actin-binding site
and weakening the interaction with actin.
Step 2: Freed of actin, the myosin head
hydrolyzes ATP, causing a conformational
change in the head that moves it to a new
position, closer to the (+) end of the actin
filament, where it rebinds to the filament.
Step 3: As phosphate (Pi) dissociates from the
ATP-binding pocket, the myosin head
undergoes a second conformational change—
the power stroke— which restores myosin to its
rigor conformation. Because myosin is bound to
actin, this conformational change exerts a force
that causes myosin to move the actin filament.
Step 4: Release of ADP completes the cycle
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3. Essentials Biochemistry
3.1. Chemical building blocks of cells
3.1.1. Proteins
Proteins are linear polymers containing ten to several thousand amino acids linked by peptide bonds.
The monomeric building blocks of proteins are 20 amino acids, all of which have a characteristic
structure consisting of a central carbon atom (C) bonded to four different chemical groups: an amino
(NH2) group, a carboxyl (COOH) group, a hydrogen (H) atom, and one variable group, called a side chain,
or R group. Because of the carbon in all amino acids except glycine is asymmetric.
Figure 3.1 Common structure of amino acids
The carbon atom (C) of each amino acid is
bonded to four chemical groups. The side chain,
or R group, is unique to each type of amino acid.
Because the C in all amino acids, except glycine,
is asymmetric, these molecules have two mirror
image forms, designated L and D. Although the
chemical properties of such optical isomers are
identical, their biological activities are distinct.
Only L amino acids are found in proteins
Protein structures
Primary protein structure
− Linear or sequence arrangements of the amino acid residues
− Short chain of amino acids (20–30 amino acid residues) linked together to form peptide,
then peptide forms polypeptide (protein) contain as many as 4000 residues
− Average molecular weight of amino acids in proteins is 113
Secondary protein structure
− Various spatial arrangements resulting from the folding of localized parts of a polypeptide
chain
− Stabilized hydrogen bonds form between certain residues, parts of the backbone fold into
one or more well-defined periodic structures: the alpha (α) helix, the beta (β) pleated sheet,
or a short U-shaped turn
Tertiary protein structure
− Structure stabilized by hydrophobic interactions between the nonpolar side chains,
hydrogen bonds between polar side chains, and peptide bonds
− Compactly together in turns and random coils of the α helices and the β pleated sheet
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Quaternary protein structure
− Multimeric proteins consist of two or more polypeptides or subunits
− Very large, exceeding 1mDa in mass
− Approaching 30–300nm in size
Folding of Proteins
A polypeptide chain is synthesized by a complex process called translation in which the assembly of
amino acids in a particular sequence is dictated by messenger RNA (mRNA)
Two general families of chaperones are recognised for promoting protein folding probably:
Molecular chaperones, which bind and stabilize unfolded or partly folded proteins, thereby
preventing these proteins from aggregating and being degraded
Chaperonins, which directly facilitate the folding of proteins
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Figure 3.2 Chaperone- and chaperonin-mediated protein folding
(a) Many proteins fold into their proper three dimensional structures with the assistance of Hsp70-like
proteins (top). These molecular chaperones transiently bind to a nascent polypeptide as it emerges from
a ribosome. Proper folding of other proteins (bottom) depends on chaperonins such as the prokaryotic
GroEL, a hollow, barrel-shaped complex of 14 identical 60,000-MW subunits arranged in two stacked
rings. One end of GroEL is transiently blocked by the cochaperonin GroES, an assembly of 10,000-MW
subunits. (b) In the absence of ATP or presence of ADP, GroEL exists in a “tight” conformational state
that binds partly folded or misfolded proteins. Binding of ATP shifts GroEL to a more open, “relaxed”
state, which releases the folded protein
3.1.2. Nucleic acids
Nucleic acids are linear polymers containing hundreds to millions of nucleotides linked by
phosphodiester bonds. The monomers from which DNA and RNA are built, called nucleotides, all have a
common structure: a phosphate group linked by a phosphoester bond to a pentose (a five-carbon sugar
molecule) that in turn is linked to a nitrogen- and carbon-containing ring structure commonly referred to
as a base. The bases adenine, guanine, and cytosine are found in both DNA and RNA; thymine is found
only in DNA, and uracil is found only in RNA.
A single nucleic acid strand has a backbone composed of repeating pentose-phosphate units from which
the purine and pyrimidine bases extend as side groups. A nucleic acid strand has an end-to-end chemical
orientation: the 5’ end has a hydroxyl or phosphate group on the 5’ carbon of its terminal sugar; the 3’
end usually has a hydroxyl group on the 3’ carbon of its terminal sugar.
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Figure 3.3 Chemical structures of the principal bases in nucleic acids
DNA (deoxyribonucleic acid)
DNA contains all the information required to build the cells and tissues of an organism
DNA is arranged in hereditary units, now known as genes
In the process of transcription, the information stored in DNA is copied into ribonucleic acid
(RNA), which has three distinct roles in protein synthesis.
DNA consists of two associated polynucleotide strands that wind together to form a double helix.
The orientation of the two strands is antiparallel.
The strands are held in precise register by formation of base pairs between the two strands: A is
paired with T through two hydrogen bonds; G is paired with C through three hydrogen bonds.
DNA synthesis always proceeds in the 5’⟶3’ direction because chain growth results from
formation of a phosphoester bond between the 3’ oxygen of a growing strand and the α
phosphate of a deoxynucleoside 5’-triphosphate precursor (dNTP)
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Figure 3.4 The DNA double helix
(a) Space-filling model of B DNA, the most common form of DNA in cells. The bases (light shades) project
inward from the sugar-phosphate backbones (dark red and blue) of each strand, but their edges are
accessible through major and minor grooves. Arrows indicate the 5’⟶3’ direction of each strand.
Hydrogen bonds between the bases are in the center of the structure. The major and minor grooves are
lined by potential hydrogen bond donors and acceptors (highlighted in yellow). (b) Chemical structure of
DNA double helix. This extended schematic shows the two sugar-phosphate backbones and hydrogen
bonding between the Watson-Crick base pairs, A-T and G-C
Figure 3.5 Overview of four basic molecular genetic processes
26
During transcription of a protein-coding gene by RNA polymerase ( ), the four-base DNA code
specifying the amino acid sequence of a protein is copied into a precursor messenger RNA (premRNA) by
the polymerization of ribonucleoside triphosphate monomers (rNTPs). Removal of extraneous
sequences and other modifications to the pre-mRNA ( ), known as RNA processing produces a
functional mRNA, which is transported to the cytoplasm. During translation ( ), the four-base code of
the mRNA is decoded into the 20–amino acid “language” of proteins. Ribosomes, the macromolecular
machines that translate the mRNA code, are composed of two subunits assembled in the nucleolus from
ribosomal RNAs (rRNAs) and multiple proteins (left). After transport to the cytoplasm, ribosomal
subunits associate with an mRNA and carry out protein synthesis with the help of transfer RNAs (tRNAs)
and various translation factors. During DNA replication ( ), which occurs only in cells preparing to
divide, deoxyribonucleoside triphosphate monomers (dNTPs) are polymerized to yield two identical
copies of each chromosomal DNA molecule. Each daughter cell receives one of the identical copies.
RNA (ribonucleic acid)
Messenger RNA (mRNA) carries the genetic information transcribed from DNA in the form of a
series of three nucleotide sequences, called codons, each of which specifies a particular amino
acid
Translation of mRNA is interpreted by transfer RNA (tRNA) with the aid of ribosomal RNA (rRNA),
and its associated proteins. Each type of amino acid has its own subset of tRNAs, which bind the
amino acid and carry it to the growing end of a polypeptide chain if the next codon in the mRNA
calls for it. The correct tRNA with its attached amino acid is selected at each step because each
specific tRNA molecule contains a three-nucleotide sequence, an anticodon, that can base-pair
with its complementary codon in the mRNA.
Ribosomal RNA (rRNA) associates with a set of proteins to form ribosomes. These complex
structures, which physically move along an mRNA molecule, catalyse the assembly of amino
acids into polypeptide chains. They also bind tRNAs and various accessory proteins necessary for
protein synthesis. Ribosomes are composed of a large and a small subunit, each of which
contains its own rRNA molecule or molecules
27
28
Figure 3.6 Overview of RNA processing to produce
functional mRNA in eukaryotes
The β-globin gene contains three protein-coding
exons (coding region, red) and two intervening
noncoding introns (blue). The introns interrupt
the protein-coding sequence between the
codons for amino acids 31 and 32 and 105 and
106. Transcription of eukaryotic protein-coding
genes starts before the sequence that encodes
the first amino acid and extends beyond the
sequence encoding the last amino acid,
resulting in noncoding regions (gray) at the ends
of the primary transcript. These untranslated
regions (UTRs) are retained during processing.
The 5’ cap (m7Gppp) is added during formation
of the primary RNA transcript, which extends
beyond the poly(A) site. After cleavage at the
poly(A) site and addition of multiple A residues
to the 3’ end, splicing removes the introns and
joins the exons. The small numbers refer to
positions in the 147–amino acid sequence of β-
globin.
Figure 3.7 The three roles of RNA in protein synthesis
Messenger RNA (mRNA) is translated into
protein by the joint action of transfer RNA
(tRNA) and the ribosome, which is composed of
numerous proteins and two major ribosomal
RNA (rRNA) molecules (not shown). Note the
base pairing between tRNA anticodons and
complementary codons in the mRNA. Formation
of a peptide bond between the amino group N
on the incoming aa-tRNA and the carboxyl-
terminal C on the growing protein chain (purple)
is catalyzed by one of the rRNAs.
29
3.1.3. Polysaccharides
Polysaccharides are linear or branched polymers of monosaccharides (sugars) such as glucose linked by
glycosidic bonds. The building blocks of the polysaccharides are the simple sugars, or monosaccharides.
Monosaccharides are carbohydrates, which are literally covalently bonded combinations of carbon and
water in a one-to-one ratio (CH2O)n.
3.2. Membrane Transport
3.2.1. Passive diffusion
Molecules can diffuse across cellular membranes without the aid of transport proteins. No metabolic
energy is expended because movement is from a high to a low concentration of the molecule, down its
chemical concentration gradient. A simple membrane bilayer is permeable to small hydrophobic
molecules and small uncharged polar molecules, slightly permeable to water and urea, and essentially
impermeable to ions and to large polar molecules
Figure 3.8 Relative permeability of a pure phospholipid bilayer to various molecules
30
3.2.2. Membrane proteins mediate transport
Transport of most molecules into and out of cells requires the assistance of specialized membrane
proteins.
Figure 3.9 Membrane transport proteins
1. Pumps utilize the energy released by ATP hydrolysis to power movement of specific ions (red
circles) or small molecules against their electrochemical gradient
2. Channels permit movement of specific ions (or water) down their electrochemical gradient.
3. Transporters, which fall into three groups, facilitate movement of specific small molecules or
ions.
3a. Uniporters transport a single type of molecule down its concentration gradient.
3b, c. Cotransport proteins (symporters and antiporters) catalyze the movement of one
molecule against its concentration gradient (black circles), driven by movement of one or more
ions down an electrochemical gradient (red circles).
Active transport
ATP-powered pumps (or simply pumps) are ATPases that use the energy of ATP hydrolysis to move ions
or small molecules across a membrane against a chemical concentration gradient or electric potential or
both.
Facilitated diffusion
Channel proteins transport water or specific types of ions and hydrophilic small molecules down their
concentration or electric potential gradients
Co-transporters
Transporters (also called carriers) move a wide variety of ions and molecules across cell membranes.
Three types of transporters have been identified,
Uniporters transport a single type of molecule down its concentration gradient via facilitated
diffusion.
Antiporters and symporters couple the movement of one type of ion or molecule against its
concentration gradient with the movement of one or more different ions down its concentration
gradient
31
Rate of transport
Figure 3.10 Rate of transport versus concentration
difference plot
Lipid diffusion shows a linear
relationship. Rate of diffusion increases
with concentration gradient
Facilitated diffusion: maximum rate –
limited by number of transport proteins
(saturation)
Rate of active transport increases with
concentration gradient
− High rate even when no
concentration difference across the
membrane
− Stops if cellular respiration stops
(cells die)
3.2.3. Osmotic Pressure
The pressure that must be applied to a solution to prevent the inward flow of water across a semi-
permeable membrane
Hypertonicity is the presence of a solution that causes cells to shrink
Hypotonicity is the presence of a solution that causes cells to swell
Isotonic is the presence of a solution that produces no change in cell volume
32
4. Extracellular Matrix Scaffolds
Cells don’t end at their plasma membrane. Cells secrete, assemble and live in a matrix
ECM: meshwork of macromolecules outside plasma membrane
Facilitates communication into/out of cell
− Stores and presents regulatory molecules
− May be connected to the cytoplasm via integrin proteins present in the plasma membrane
− Binds cells together in tissues
Provides structural support and architecture
− Mechanical support – structural integrity, tissue architecture
− Cell differentiation cues
− Controls cell growth and migration
− Determines spatial orientation
Consists mainly of glycoprotein ( proteins with oligosaccharide chains), especially collagen
Some cells attach directly to ECM by bonding to collagen or fibrinogen
4.1. ECM components
4.1.1. Fibrous proteins
Collagen
Major scaffold protein of the ECM and most common forms are type I and III (Type XVIII is a
proteoglycan)
Responsible for functional integrity of tissues such as cartilage, skin, tendon
High tensile strength, equivalent to steel when compared on cross sectional area
General amino acid sequence: X - Gly – Pro – Hypro – Gly – X arranged in a triple helix
Figure 4.1 The collagen triple helix
(a) Side view of the crystal structure of a polypeptide
fragment whose sequence is based on repeating sets
of three amino acids, Gly-XY, characteristic of
collagen α chains. (Center ) Each chain is twisted into
a left-handed helix, and three chains wrap around
each other to form a right-handed triple helix. The
schematic model (right) clearly illustrates the triple
helical nature of the structure. (b) View down the
axis of the triple helix. The proton side chains of the
glycine residues (orange) point into the very narrow
space between the polypeptide chains in the center
of the triple helix. In mutations in collagen in which
other amino acids replace glycine, the proton in
glycine is replaced by larger groups that disrupt the
packing of the chains and destabilize the triple-
helical structure
33
Elastin
Provides elasticity to tissues
− Due to crosslinking of lysine residues
Produced by fibroblasts and smooth muscle cells
Important for skin, arteries, bladder
Laminin
Located in the basement membrane
Self associates – forms sheets
18 different forms – tissue specific
Binds to cells
34
Fibronectin
300 – 400μg/ml plasma
− Produced by many cells
− Homodimer – 220kD units
Multi domain
− Binds to cells and ECM
Figure 4.2 Organization of fibronectin chains
Vitronectin
Other major cell adhesion protein in blood plasma
− 200 – 400μg/ml in plasma
− Conformationally labile
Also has domain structure
− Binds to cells and ECM
4.1.2. Non-fibrous – Proteoglycans
Proteoglycans proteins with pendant sugar chains
4 families based on sugar structure (glycosaminoglycan)
− Chondroitin sulphate (glucosamine)
− Heparan sulfate (heparin)
− Keratan sulfate
Glycosylation occurs in the golgi
Sugars impart additional biological function – growth factor reservoirs
May contain up to 200 glycosaminoglycan chains
Glycosaminoglycans covalently bound to a core protein via serine side chains
35
Figure 4.3 The repeating disaccharides of glycosaminoglycans (GAGs), the polysaccharide components of proteoglycans
Hyaluronan
viscous, gel–like, compression-resistant
Found in the endothelial cell basement membrane, developing tissue, healing wounds, synovial
fluid
Made by fibroblasts
Degraded in vivo by hyaluronidase
36
Functions:
Lubricant
Shock absorber
Flexible cement
Attachment site
Path for cell migration
Crosslinks to other proteins for matrix stabilisation – heavy chain proteins
Heparin
Molecular weight approximately 1104
20 disaccharide units
Produced and released by mast cells in lungs and liver
Anticoagulant
− Forms a complex with antithrombin III which binds to thrombin and inactivates it
− This leads to limited clot formation
Aggrecan
Approximately 100 GAG chains/molecule, approximately 50 disaccharides/GAG chain
chondroitin sulfate or keratan sulfate
Major GAG–PG in cartilage
− Disperses shocks the joint
− Marker of joint degradation
Syndecans
Family of cell-surface PGs
Core protein domains
− Intracellular
− Transmembrane
− Extracellular
Functions:
Interactions
− Cell-cell
− Cell-matrix
Growth factor receptor
37
4.2. Integrin-containing adhesive structures Many nonepithelial cells have integrin-containing aggregates (e.g., focal adhesions, 3D
adhesions, podosomes) that physically and functionally connect cells to the extracellular matrix
and facilitate inside-out and outside-in signaling.
Integrins exist in two conformations that differ in the affinity for ligands and interactions with
cytosolic adapter proteins
4.3. Focal adhesion Cell adhesion mediated by a localized aggregation of receptors and linking proteins (referred to
as focal adhesion complexes or FACs)
FAC formation is dynamic, not static
KD for integrin-ECM protein binding approximately 10-6 to 10-7M
− Low affinity binding ⇒ easily reversible
− Facilitate cell migration by FAC formation/deformation
Cell signalling
Between cells and the body to coordinate the number of cells, their position and function
Cells communicate through chemical signals which direct cell proliferation, differentiation,
migration, cytokine production or ECM production
As the gene expression provided of every cell type is different, cells will response differently to
certain signals.
Complex as cells may be exposed to many signals at any one time
Signals may be
− Diffusible molecules
− Extracellular matrix proteins
− Membrane-bound ligands
Cells communicate by direct contact with
proteins expressed on the membrane of both
cells. One protein acts as a ligand and the other
as a receptor. Binding of the proteins causes a
change in conformation leading to activation
which transduces the signal into the cell e.g.
receptor tyrosine kinases, G proteins, integrins
38
4.4. Cell Junctions
4.4.1. Tight Junctions
Seals neighbouring cells together in an epithelial sheet
4.4.2. Anchoring junctions
Adheren junctions: Joins actin bundles between neighbouring cells
Focal adhesion: Attaches actin filaments in a cell to the ECM
Desmosome: Joins intermediate filaments between neighbouring cells
Hemidesmosome: Anchors intermediate filaments in a cell to the ECM
4.4.3. Communicating Junctions
Gap junctions: Cell-cell junction allows the passage of small water-soluble ions, molecules and
electrical signals.
Chemical synapse: Neurotransmission
Figure 4.4 The principal types of cell junctions that connect the columnar epithelial cells lining the small intestine
(a) Schematic cutaway drawing of intestinal epithelial cells. The basal surface of the cells rests on a basal
lamina, and the apical surface is packed with fingerlike microvilli that project into the intestinal lumen.
Tight junctions, lying just under the microvilli, prevent the diffusion of many substances between the
intestinal lumen and the blood through the extracellular space
39
4.5. Cell Locomotion
Cell locomotion results from the coordination of motions generated by different parts of a cell. These
motions are complex.
Membrane Extension: The network of actin filaments at the leading edge is a type of a cellular engine
that pushes the membrane forward by an actin polymerization–based mechanism. The concerted action
of numerous filaments undergoing similar movements and their cross-linkage into a mechanically strong
network generate sufficient force (several piconewtons) to push the membrane forward.
Cell–Substrate Adhesions: When the membrane has been extended and the cytoskeleton has been
assembled, the membrane becomes firmly attached to the substratum. Time-lapse microscopy shows
that actin bundles in the leading edge become anchored to the attachment site, which quickly develops
into a focal adhesion. The attachment serves two purposes: it prevents the leading lamella from
retracting and it attaches the cell to the substratum, allowing the cell to push forward.
Cell Body Translocation: After the forward attachments have been made, the bulk contents of the cell
body are translocated forward.
Breaking Cell Attachments: Finally, in the last step of movement (de-adhesion), the focal adhesions at
the rear of the cell are broken and the freed tail is brought forward.
Figure 4.5 Steps in keratinocyte movement
In a fast moving cell such as a fish epidermal cell, movement begins with the extension of one or more
lamellipodia from the leading edge of the cell (1); some lamellipodia adhere to the substratum by focal
adhesions (2). Then the bulk of the cytoplasm in the cell body flows forward (3). The trailing edge of the
cell remains attached to the substratum until the tail eventually detaches and retracts into the cell body
(4).
40
5. Cell Lineage Cell culture: cells (usually derived from multicellular eukaryote)are grown under controlled
conditions
Primary culture: growth of cells from explanted tissue
Passage: dispersing and moving cells to fresh vessels
“Contact inhibited” once cells cover entire surface because cells don’t need to grow anymore
Cell line: formed after the first passage
Monolayer culture: growth of cells on a solid substrate (common)
Suspension culture: growth of cells without support
Medium: liquid which supports cell growth- often contains calf serum
Medium provides control of pH, buffering components, glucose, etc
Issue with calf serum is that we don’t really know what’s in calf serum or how it changes from
batch to batch.
Confluence: growth area covered with a layer of touching cells
5.1. Evolution of a cell line: Within the first two weeks cell number drops due to the shock of the cells being removed from
in vivo environment
Exponential growth of the cell line until a plateau
Brought about through apoptosis, cells have a certain life cycle
In order to go past the plateau - transformation occurs:
− Tumours and cancerous cells - continuous cell line
− Vectors used to induce this type of cell line are viruses
Cell death
Figure 5.1 Evolution of a Cell Line
41
5.2. Advantages and disadvantage of tissue Culture
Advantages of tissue Culture
Control of Environment Temperature, pH, hormone and nutrient concentrations.
Control of Cellular Constitution Defined cellular identity and controlled cellular interactions.
Less Time Time measured in days to weeks, rather than months.
Scale: Less Reagent Required Distribution of compounds in milliliter volumes compared to systemic distribution.
Less Expensive Than In Vivo
Experiments
After initial equipment acquisition, the cost of consumables and media are
significantly less expensive than animal husbandry.
Replicates and Variability Traditionally easy to replicate and less variability than in vivo studies.
Reduction of Animal Use Treatment is administered to cell lines or primary cultures/tissue rather than in the
intact animal. Animals stress due to treatment is reduced.
Stocking Suspend cells in DMSO and cryogenically stocked down in liquid nitrogen for later
use
Disadvantages of tissue Culture
Lack of Systemic Input from the
Periphery
Brain pathology receives input from the peripheral system.
Sterile Technique/Expertise The process of cell culture requires knowledge about sterile technique and the cell
types of interest.
Potential for Dedifferentiation and
Selection
The cell types may not be identical to cells in the intact system.
Three Dimensional Structure Lost The effects of tissue and organ structure are not present.
5.3. Initiation of cell culture There are 3 common ways to start a tissue culture:
Organ culture: 3D architectural characteristics of the tissue are retained and cultured either on a
grid, in gel or on a raft at the gas-liquid interface. Cell proliferation is limited.
Primary explants culture: a piece of tissue is cultured on a solid substrate at either glass- or
plastic - liquid interface.
Cell culture: mechanically or enzymatically release the cells in suspension which can be cultured
as an adherent monolayer on a solid substrate or a suspension in culture medium. Good
proliferation is usually found for such tissue culture. Propagation of cells becomes feasible and
requires passage and culturing of the daughter cells. This forms the beginning of a cell line.
42
Figure 5.2 Types of tissue culture
43
6. Polymeric Scaffolds for Tissue Engineering
Biocompatibility: appreciate or suitable biological performance of a material in a specific
application
“The ability of a material to perform with an appropriate host response in a specific application”
— The Williams Definition of Biocompatibility
Biological performance: result of the interaction between biomaterials and living system;
encompasses both the host response and the material response
Host response: the local and systemic response, other than the intended therapeutic response
of living system to the material
Material response: the response of the biomaterial to the living system or how the biomaterial is
altered following contact with the living system
Polymers are macromolecules built up by linking large numbers of much smaller molecules
− Small molecules = Monomers
− Reactions of small molecules = Polymerization
Polymer scaffolds can be used in tissue engineering applications to:
Deliver cells and/or signals
Define or fill space for engineered tissues
Guide tissue development
Completely degrade in vivo
6.1. Biomaterials for tissue engineering Polymers
− Natural
− Synthetic
Metals
Ceramics
Composites
6.2. Properties/design criteria for polymers in tissue engineering Strength
Stiffness
Thermal
Surface
Electrical
Economics
Scale-up
Environmental
Aesthetic
Safety
44
When it comes to selecting an appropriate polymer for use as a TE scaffold (or any material for that
matter) it is important to realise that there are many properties that must be considered.
These include, but are not limited to the following:
Appropriate physical/mechanical properties
− Strength, elasticity, porosity, etc
Production properties
− Can it be purified, fabricated and sterilized easily
Does not induce undesirable host reactions
− Toxicity, thrombus, etc
Maintain properties during sterilization and use
− Indirect to direct contact
− Over time period form 1 hr, 1 day, 1 year, 10 years
"Ideal" OPEN scaffold design criteria
Biocompatible
Completely resorbable
Non-toxic degradation products
Support differentiated cell proliferation and function
Adequate shelf life
"Ideal" CLOSED scaffold design criteria
Biocompatible
Non-degradable
Non-toxic leachable products
Support differentiated cell proliferation and function
Prevent cell ingrowth/act as an immune-isolation barrier
Adequate shelf life
6.3. Classification of polymers
45
6.4. Crosslinking
Physical
Hydrogen Bonding
Freeze Thawing
− Inducing crystallinity
Entanglements
Chemical
Condensation
Free Radical
6.5. Polymer degradation
6.5.1. Degradation types
Chemical/Molecular
Hydrolysis
H2O attacks certain bonds in the chains,
causes chain cleavage
Oxidation
Enzymes/peroxides attack susceptible
bonds, causes chain cleavage
Macroscopic Bulk
Fatigue
Repeated movement of device causes
breakdown of device
Wear
Constant friction causes pieces of device to
break off
Stress
Constant stress can cause deep surface
cracks in the device
46
6.5.2. Results of Degradation
Decrease in molecular weight
Mechanical properties decline
Swelling
Network Deterioration
Weight Loss
Branching or crosslinking
Surface cracking
Embrittlement of polymer
6.5.3. Degradation Factors
Choice of polymer
− Chemistry, morphology
Processing
− Fabrication, geometry
Additives
− Stabilizers or leachables
Cleaning, packaging, sterilization and
transport
Moisture
− Possible leaching, swelling, softening or
hydrolysis
Proteins
− Attachment to the surface, fouling,
degradation
Temperature
− Thermal transitions, changes in
mechanics, degradation
pH
− Changes in mechanics, swelling,
degradation
Oxidation
Radiation
UV, gamma rays
Overuse / Wear / Fatigue
Stresses
Tensile, compressive, shear
Misuse
47
7. Clinical Application
7.1. Developing a clinical produce
7.1.1. Define the clinical problem
Understand what the current available technology is and where it might head in the future. Looking at
what is product available now and what can be available in the future. Also understand what the market
need is.
Knowledge about the tissue/organ
Gross anatomy (macroscopic anatomy): size, shape, location, structure
Histology (microscopic anatomy): morphology, microscopic structure, cellular level
Physiology: function (macroscopic, microscopic)
Pathology: abnormalities or diseases (long term or short term impact on the body)
Current clinical treatments (evaluating the need for tissue engineered products compare to the
current treatment method based on availability, complexity, functions, cost, ethics, side effect,
etc)
Key issues
Types of tissue/organ going to be engineered (major group of tissue e.g. connective tissue,
epithelium tissue, muscle tissue)
Location and specific features that distinguish it from other members of the same tissue
category
Function of where the tissue is located and degree of lost in function
The level of regeneration/regrowth that requires to regain meaningful function
7.1.2. Preclinical trial 1: tissue culture testing
Why use tissue culture?
Easy to control variables and its environment
Can run multiple samples
Fast results
To reduce the number of animal used (ethical reason, financial problems, complications rise
from using animal models, etc)
7.1.3. Preclinical trial 2: using animal models
Why use animal models?
Modeling in 3 dimensions
Dynamic system that has mechanical forces acting on it, complete endocrine/exocrine system
(e.g. hormone regulation), has paracrine signaling (cell signaling), complete nerve systems
48
Difference in vitro study and in vivo study (animal models)
Tissue culture Animal models
Use cell culture medium Vascularised Use cell culture medium Have lymphatic system
Not applicable Have cell signaling (paracrine) system Use cell culture medium Have blood Use cell culture medium Have WBC and RBC
Uses buffers Have regulation system (pH, electrochemical) Not applicable Have nervous system Not applicable Enable fibrous thrombus formation
Not grown under stress loading Complex mechanical loading for every
tissue/organ
7.1.4. Clinical trials
Applying the understanding from the animal models into the clinical situation
Understand the differences between human and animals
Difference between humans and animals
Difference in gross anatomy
Difference in tissue histology, need to know the human equivalent of the animal tissue
Difference in motion and movement, need to know the applied loading and function of the
animal to human equivalent
Sex differences of animal, different hormones in different sex may cause big effect responses in
animals
Animals have different time frame of age compare to human
Diseases in animals may have a different anomalies which may make it hard to interpret the
result correctly (e.g. genetic anomalies)
Different evaluation of pain responses compare to human
Studies can be done on animal models
Response of the normal or induced disease tissue to the implantation, conclusions can be drawn
from the control to the test samples (e.g. integration test by histology)
Functional effects (e.g. mechanical loadings, blood sample tests) on the implant
(Feedback from pain response is very hard as there are no indicators for pain response in animals)
Feedback from animal models
Safety issue
Local and systemic response to the construct (host response)
Material response caused host response
Toxicity responses (in vitro: cytotoxicity; in vivo: systemic toxicity)
49
Effectiveness of the treatment
Assessing the function of the tissue/organ regenerated (e.g. bone repair: testing the
strength of the bone, mineral density, cell distribution)
Wound healing time frame
Same as human
Accelerated response (faster than human, scale to human life span)
Regeneration assessment
Histopathological evaluation (e.g. section slide, H&E stain, etc)
Biochemical assessment (e.g. glucose level, insulin level, etc)
Functional properties (e.g. mechanical loading, regrowth, nervous transmission, etc) over
time
Assessing clinical trial data
Pain assessment (use an analogue scale to show the level of pain experienced)
Behavior assessment (adaption of the animal to the implant)
Psychological assessment
Function
Imaging
Non-destructive testing (e.g. indentation probes for mechanical testing)
Biopsies
7.2. Tissue regeneration
7.2.1. Factors limiting regeneration
Maintain cell viability and cell proliferation for thick tissue (problem with transporting nutrient
in and waste material out of the cells in the center of the tissue)
Laboratory engineered tissue lacks vascularisation (problem of transporting nutrient in and
waste product out when implanted in the body if developing vascular system for the implanted
tissue was not fast and sufficient enough)
Collapse of the surrounding tissue into the defect causing the surrounding tissue to be
disorganized and hard to repair structurally
Mechanical stress and strain on the engineered tissue that disestablished the structure during
cell repairing
7.2.2. Regenerative tissue
Tissue can substantially regenerate under certain given signals (e.g. hormones, neurotransmitters,
cytokines, growth factors, etc)
50
Tissue/ organ can regenerate
Bone
Epithelium tissue
Smooth muscle
Tissue/ organ have limited or no regenerate properties
Articular cartilage, ligament, articular disk (e.g. intervertebral disc)
Reason: non vascular, signals from plasma cannot reach the cell to stimulate cell division, low
cell density, low mitotic activity
Large area epithelium tissue damage
Reason: problem with cell migration, infection, exposure to external environment may lead to
dehydration which affects cell survival.
Cardiac, skeletal muscle
Reason: no mitotic activity
Nerve tissue
Reason: no mitotic activity, if nerves grow back function is limited and requires scaffold to
promote cells to connect with each other
7.3. Product development
7.3.1. Production issues
Cell sourcing (mammalian cells: human/animal, commercially bought, from patient)
Controlling cell function (control cell proliferation, retain cellular function:
chondrocyte/fibroblast without differentiating)
Developing interactive biomaterials (bioactive/resorbable material: hydroxyapatite, BioGlass®,
polylactic acid)
Engineering 3D constructs/healing response (tissue vascularisation, resembles the original tissue,
open system scaffold, close system scaffold, maintain cell viability)
Scaling up manufactured products (lab scale to manufacturing scale, batch to batch variation,
automation of the process, process control)
Preserving manufactured products (packaging, shelf life, preserving viable cells)
Controlling in vivo biological responses (response to degradation of product, inflammatory
response)
Engineering immune acceptance
Assessing post-implant viability (evaluating success rate of the implant, biopsies, biochemical
evaluations)
51
7.3.2. Examples of current tissue engineering products
Artificial skin (e.g. Dermagraft®)
Absence of hair follicles, sweat glands, and indentation, it doesn’t require much vascularisation. Product
is less complex, doesn’t have thick 3D tissue problems and much straight forward to produce. Products
provide wound covering and have cells and stimulation for cell proliferation.
Cartilage replacement (e.g. Carticel®)
Non vascular, doesn’t have same structure to normal articular cartilage structure. Used to repair
articular cartilage injuries in adults who have not responded to an arthroscopic or other surgical repair
procedure Autologous cartilage implantation (ACI) method, inject the cartilage into the defect and cover
with periosteal patch to keep chondrocytes in place or fibrous clot. The performance of the implant was
analyzed after a period of time for integration with the surrounding tissue.
Key issues
Cell source and source of type II collagen production
Scaffolds
Integration of the cells with the scaffold and the bone
Mimic mechanical properties of the bone
Cardiovascular
Small diameter blood vessels to carry out blood transport to the cardiac muscle
Heart valves control blood flow
Myocardial patches to repair damaged areas
Key issues
Myocardial repair (cell extraction and cell implantation in clinical trials)
Myocardial patches can only last for only 5 years
Small diameter blood vessel substitute (approx 6mm, none on market)
Current treatment for cardiac blood vessel by,
a) Replace blood vessel from the leg
b) Run out of blood vessel if it needed to be replaced again
c) Overall blood vessels in the body isn’t in good condition
Thrombus formation in small diameter blood vessels
Mechanical issues (continuous pulsation)
Regulatory approval for heart valve (degradation, fatigue, mechanical failure)
7.3.3. Market for tissue engineering products
Current clinical trials on tissue engineered artificial skin, cartilage, bone and bladder repair system
In 2004 the market for TE was USD$144.6m; it is predicted to be USD$2.1b in 2015, which covers skin,
bone, cartilage, dental, cardiovascular, and organ regeneration.
52
7.3.4. Obstacle/challenges of tissue engineering
Few commercialized products
High failure rate
High investment, low return
Long term expensive product
Cumbersome regulatory and maintenance requirement
Complex surgical/medical procedure required
Emerging technology, not mature
7.3.5. Future direction
Market going to increase as population ages
Long term focus
Improvement of regulation system to suit TE
Improvement of technology
Application specific material
Artificial scaffold have cues similar to biological systems
Advances in cell technology (e.g. stem cell technology, therapeutic cloning)
Understanding principles
Collaboration with medical society