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title soil, lateral gene transfer, and hybrid genomes robert beiko 20 october 2015 a. microbe lateral gene transfer http://genome.cbs.dtu.dk/staff/dave/mscourse/lekt_11feb2003c.html…
1. is it time for a (community) efforttowards a soil referencedatabase?erick cardenas, james cole, maude david, aarongaroutte, adina howe, janet jansson, davemyrold, james…
submitted 9 june 2014 accepted 9 september 2014 published 30 september 2014 corresponding authors michael imelfort michaelimelfort@gmailcom gene w tyson gtyson@uqeduau academic…
1. (an example of) computing the microbial world rob beiko june 25, 2014 2. siddique et al. (2014) front microbiol 3. lawley et al., plos genet (2012) 4. the breakfast organisms…
1. classifying biological information the promise and perils of dna sequences rob beiko september 19 dcsi 2013 norm macdonald donovan parks 1 2. from francis crick’s letter…
1. hanggliding.org 2. http://www.merrittcartographic.co.uk/earth_structure.html 3. ‘‘the lower the organization of the body is, the more generally it is distributed.”…
metagenomics* ii: what are they doing? * [actual metagenomics this time] ribosomal rna genes in context tang et al. (2011) bmc genomics rrna genes possibly interesting too?…
1. ...conor meehan & rob beiko 2. meet the lachnospiraceae bryant and small, 1956 fao.org wooly coil+ 3. meet the lachnospiraceae bacteria archaea pigeon: fir0002/flagstaffotos…
1. when trees can’t agreerobert beiko 2. - the human microbiome -an ecosystem unlike any other2 3. human gut microbiome: 2-3 million genestypically > 160 “species”…
common assumptions and pitfalls of microbiome analysis âwe made too many wrong mistakes.â - yogi berra rob beiko november 3, 2016 2 an illustrative example â frailty,…
1. microbiome analysis 16s and metagenomics ‘ 2. welcome! your tutorial team: me (16s theory) mike hall (16s practical) morgan langille (metagenomics theory and practical)…
1. a network of everything??rob beiko 2. the basis of microbial taxonomywoese et al (1990) pnas 3. contrasting 16s trees trimmed & ry-recodedmorgan langille, conor meehan…
1. gènes sans frontières in the evolving human microbiome robert beiko faculty of computer science dalhousie university thursday, april 17, 2014 è slideshare: http://www.slideshare.net/beiko/2014-04beikobiology…
gengis 2.0 rob beiko new approaches to understand the geography of our microbial world gengis 2 1 donovan parks mike porter brett o`donnell timothy mankowski 2 demo: the…
1. 1 2. “all of your answers are approximate, you might as well live with it…” 2 andrew rau-chaplin, 1½ hours ago 3. integrated rapid infectious disease analysis www.irida.ca…
1. http://www.nimr.mrc.ac.uk/images/multimedia/news/large/cake-large.jpg 2. robert beiko faculty of computer science* dalhousie university halifax, 2 feet of snow last week,…
1. phylotastic!metagenomics use cases holly bik, uc davis 2. -omic dictionary• marker gene studies – amplification of a conserved homologous gene (18s, 16s rrna) from…
quantitative metagenomics lea benedicte skov hansen, phd ngs course 13th of june 2016 13/06/2016 quantitative metagenomics 2 dtu sytems biology, technical university of denmark…
ion 16s™ metagenomics kit and ion reporter™ metagenomics workfl ow solution culture-free rapid identifi cation of polybacterial research samples using the ion pgm™…
aina maria mas calafell genomics metagenomics introduction microbial communities primary role in biogeochemical systems study of microbial communities 1- culture-based methodologies…