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bcb 444/544#26 - gene prediction * * gene prediction chp 8 - pp 97 - 112 wed oct 24 - lecture 27 (will not be covered on exam 2) regulatory element prediction thurs oct 25
powerpoint presentationlecture 4 sequence alignment #4 - sequence alignment * pairwise sequence alignment dynamic programming databases, isu resources,& pairwise sequence
powerpoint presentation#11 - multiple sequence alignment * chp 4 - pp 51-62 multiple sequence alignment (msa) chp 5 - pp 63-74 position specific scoring matrices & profiles
bcb 444/544bcb 444/544 f07 isu terribilini #24 - rna secondary structure prediction #23 - protein tertiary structure prediction bcb 444/544 fall 07 dobbs * * protein tertiary
bcb 444/544#32 - machine learning * * phylogenetic – distance-based methods phylogenetics – parsimony and ml machine learning functional and comparative genomics
bcb 444/544#25_oct19 bcb 444/544 f07 isu dobbs #25 - more rna structure & bcb 544 projects #25 - more rna structure & bcb 544 projects bcb 444/544 fall 07 dobbs *
bcb 444/544#29 - phylogenetics * * promoter & regulatory element prediction phylogenetics basics gene & regulatory element prediction bcb 444/544 f07 isu terribilini
bcb 444/544bcb 444/544 f07 isu dobbs #20 - protein structure basics & classification #20 - protein structure basics & classification bcb 444/544 fall 07 dobbs * protein
powerpoint presentationlab 3 - blast * section v structural bioinformatics coiled-coil prediction lab 3 - blast * usually 3 (or 4) state predictions: h = -helix e = -strand
powerpoint presentation& eric green (nih) lecture 1 #1 - what is bioinformatics * #1 - what is bioinformatics * #1 - what is bioinformatics * #1 - what is bioinformatics
powerpoint presentationblast #8_sept7 bcb 444/544 f07 isu dobbs #8 - finish dp, scoring matrices, stats & blast #8 finish dp, scoring matrices, stats & blast bcb
bcb 444/544secondary structure prediction bcb 444/544 f07 isu dobbs #21 - protein secondary structure prediction #21 - protein secondary structure prediction bcb 444/544
bcb 444/544#14_sept24 bcb 444/544 f07 isu dobbs #14 - review: nucleus, chromosomes, genes, rna, protein #14 - review: nucleus, chromosomes, genes, rna, protein bcb 444/544
bcb 444/544#34 - comparative genomics * * comparative genomics chp 17 functional genomics chp 18 microarray analysis proteomics #34 - comparative genomics * * fri nov 9 -
bcb 444/544#27 - gene prediction ii * * gene prediction chp 8 - pp 97 - 112 wed oct 24 - lecture 27 (will not be covered on exam 2) promoter & regulatory element prediction
powerpoint presentationbcb 444/544 f07 isu dobbs #6 - scoring matrices & alignment stats #6 -scoring matrices & alignment statistics bcb 444/544 fall 07 dobbs * pairwise
bcb 444/544next time: profiles & bcb 444/544 f07 isu dobbs #15 - rna, proteins, promoters, tfs #15 - rna, proteins, promoters, tfs bcb 444/544 fall 07 dobbs * review:
powerpoint presentation#10_sept12 bcb 444/544 f07 isu dobbs #10 - blast details + some gene jargon #10 blast details + some gene jargon bcb 444/544 fall 07 dobbs * chp 4
bcb 444/544protein structure visualization, classification & comparison #19_oct05 bcb 444/544 f07 isu dobbs #19- protein structure basics & classification #19 - protein
bcb 444/544#30 - phylogenetics distance-based methods * * phylogenetics basics gene & regulatory element prediction phylogenetic – distance-based methods phylogenetics