royal society of chemistry projects underpinning open innovation

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Royal Society of Chemistry projects underpinning Open Innovation Open Innovation Event June 2013

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This is a presentation I gave at Burlington House in London regarding some of the RSC projects we conduct that support Open Innovation

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Page 1: Royal Society of Chemistry projects underpinning open innovation

Royal Society of Chemistry projects underpinning Open Innovation

Open Innovation EventJune 2013

Page 2: Royal Society of Chemistry projects underpinning open innovation

Open Innovation as an Ecosystem

Page 3: Royal Society of Chemistry projects underpinning open innovation

RSC as an Intermediary

• We contribute to the science community as a reporter and distributor of scientific content, as a networker of scientists and the community, and as an innovator

• We facilitate access to– Data– Technology– Communities

Page 4: Royal Society of Chemistry projects underpinning open innovation

RSC InnovationAn example from eScience…

• Development of a compound centric data hub:– Aggregation of publicly accessible data sources– Exposing chemistry data directly from RSC articles– Crowd sourced deposition– Access to data and services for the community via

software programming interfaces

Page 5: Royal Society of Chemistry projects underpinning open innovation

PublicationsPublications summarise data acquisition, analysis and conclusions.– Much detail in the data– Improved navigation

should include data access– Reanalysis and reuse of

data is limited in PDFs

Page 6: Royal Society of Chemistry projects underpinning open innovation

Manage data in publications

Page 7: Royal Society of Chemistry projects underpinning open innovation

ChemSpider

• >28.5 million unique chemicals updated daily• Aggregated from >450 data sources• Focus on improving data quality, enhancing

functionality, integrating and enabling• Facilitating access to “data on the web” rather

than abstracting

Page 8: Royal Society of Chemistry projects underpinning open innovation

Building a Chemical Data Repository• Scientific publications are a summary of work– Is all work reported? Make Supp Info more valuable– What of value sits in notebooks and is lost?

• How much data is lost?– How many compounds never reported?– How many syntheses fail or succeed?– How many characterization measurements?

• The need to support “micropublications”

Page 9: Royal Society of Chemistry projects underpinning open innovation

Micropublishing Syntheses

Page 10: Royal Society of Chemistry projects underpinning open innovation

ChemSpider SyntheticPages

Page 11: Royal Society of Chemistry projects underpinning open innovation

A Data Repository as a Foundation

• Provide access to data and services:– Funded Consortia projects access the system– Billion dollar organizations integrate – • Agilent, Bruker, Thermo, Waters

– Software systems proliferate the data– Mobile Apps delivered – Data access, downloads, reuse, licensing

Page 12: Royal Society of Chemistry projects underpinning open innovation

• FP7 Initiative. PharmaSea: increasing value and flow in the marine biodiscovery pipeline (2012-2017)

Page 13: Royal Society of Chemistry projects underpinning open innovation

PharmaSea

• Dereplication via ChemSpider

• Segregation of natural products datasets

• Analytical data algorithms & integration– Computer-assisted structure elucidation

Page 14: Royal Society of Chemistry projects underpinning open innovation

It is so difficult to navigate…

What’s the structure?What’s the structure?

Are they in our file?

Are they in our file?

What’s similar?What’s similar?

What’s the target?

What’s the target?Pharmacology

data?Pharmacology

data?

Known Pathways?

Known Pathways?

Working On Now?

Working On Now?Connections to

disease?Connections to

disease?

Expressed in right cell type?

Expressed in right cell type?

Competitors?Competitors?

IP?IP?

Page 15: Royal Society of Chemistry projects underpinning open innovation

• 3-year Innovative Medicines Initiative project

• Integrating chemistry and biology data using semantic web technologies

• Open source code, open data and open standards

• Academics, Pharma companies, Publishers….

Page 16: Royal Society of Chemistry projects underpinning open innovation

Chemical Database Service• National Chemical Database

Service for UK Academics

• Integrating Commercial Databases and Services

• Chemicals, analytical data, prediction algorithms

• Development of data repository

Page 17: Royal Society of Chemistry projects underpinning open innovation

Community Repository for Data• Funding agencies encourage sharing of data• Increasing availability of “Open Data”• Develop a community repository for chemistry

data – private, public, embargoed• National services feeding the repository –

crystallography, mass spectrometry• Integrate to social networking tools for chemistry• Integrate to Electronic Lab Notebooks

Page 18: Royal Society of Chemistry projects underpinning open innovation

Model Building with Community Data

• Community data as a basis of model building– Consume data from available databases, community

data, new publications and build predictive algorithms for the community

– How many algorithms are reported and lost? How much repeat work is done in the domain of algorithmic development?

Page 19: Royal Society of Chemistry projects underpinning open innovation

As Part of the BIG Data Map

Page 20: Royal Society of Chemistry projects underpinning open innovation

Encourage Participation with Rewards and Recognition

Page 21: Royal Society of Chemistry projects underpinning open innovation

RSC Emerging Technologies Competition• “…support research intensive small companies

and academics on the path to commercialising technology in the chemical sciences”

• The Prize– Bespoke programme of mentoring and support– introduction to investors– Marketing and PR

Page 22: Royal Society of Chemistry projects underpinning open innovation

2013 WINNERS: University of Oxford, AQDOT and Biogelx

Page 23: Royal Society of Chemistry projects underpinning open innovation

RSC and the Global Chemistry Network