non-mammalian metabonomics: an analysis of coffee bean ... · and sensitivity achievable with ultra...
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NON-MAMMALIAN METABONOMICS: AN ANALYSIS OF COFFEE BEAN EXTRACTS
Jennifer H. Granger, Robert S. Plumb, and James N. Willis Waters Corporation, Milford, MA , USA
LC ConditionsLC System: Waters® ACQUITY UPLC™ System Column: 2.1 x 100 mm, 1.7 µm ACQUITY
UPLC BEH C18 ColumnFlow Rate: 0.600 mL/min. (split to ~0.150
mL/min. into mass spectrometer)Gradient: 50–95% B in 30 min., where
A: 0.1% formic acid in water; B: 0.1% formic acid in acetonitrile)
Injection Volume: 10 µL
MS ConditionsMS System: Waters Micromass® LCT Premier™
Mass Spectrometer Ionization Mode: Positive ion Acquisition Range:100–950 m/z with Woptics™
resolutionCone Voltage: 60 VCapillary Voltage:3000 VScan Time: 0.3 sInterscan Delay: 0.05 sLockSpray™: Leucine Enkephalin 25 fmol/µL at
30 µL/min.
Data AnalysisAll UPLC/MS(TOF) data were processed using Waters MarkerLynx™ Application Manager for MassLynx™ Software. Partial least squares (PLS) analysis was performed using Pirouette Software (InfoMetrix) and an exported peak list from MarkerLynx.
RESULTS AND DISCUSSION
Representative total ion current chromatograms for an extract of Sumatran coffee beans is presented in Figure 1.
INTRODUCTION
Metabonomics and Food ScienceThe science of metabonomics has evolved into a useful strategy to facilitate the differentiation of small molecule profiles in complicated biological matrices such as plasma and urine. This methodology consists of four basic steps: 1) an information-rich analysis, such as LC/MS(TOF), 2) data reduction and alignment to convert acquired spectra into a “statistics-friendly”format, 3) multivariate statistical analysis (e.g., principal components analysis (PCA) or partial least squares (PLS)), and 4) user review and interpretation of chemometric results. However, the utility of this approach is not limited to the biological arena. In fact, the pattern recognition algorithms that are at the heart of metabonomics can be applied to several areas including industrial batch syntheses, cosmetics and food sciences. Additionally, the superior chromatographic and mass spectrometric resolution and sensitivity achievable with Ultra Performance LC™
(UPLC™) coupled with the Waters Micromass® LCT Premier™ orthogonal time-of-flight mass spectrometer ensures that the maximum amount of information contained in a sample is extracted. In this example, we will implement a UPLC/MS(TOF)-based metabonomics strategy to probe the regional differences of roasted coffee beans.
EXPERIMENTAL CONDITIONS
Sample PreparationCoffee beans from five geographic regions (Africa, Indonesia, and Central, South and North America) were selected for analysis. Five beans from each region were individually extracted with acetonitrile for twelve hours. The resulting extracts were diluted 1:4 with deionized water prior to analysis by UPLC/MS(TOF).
Probing Reasons for Regional DifferencesOne of the key ions contributing to the observed clustering in that of caffeine, m/z = 195.08. The abundances of this ion in each of the coffee bean extracts can be visualized from the trends plot for caffeine in Figure 3.
Figure 3. Trend line for m/z = 195.08 across all of the samples.
From this trend line, it can be noted that coffee beans from Sumatra and Kenya appear to have the highest caffeine content. The mass spectrum of caffeine from a Kenyan coffee bean extract is given in Figure 4. Both the calculated and observed exact mass value for caffeine (MH+ C8H11N4O2, m/z = 195.0882) are identical resulting in a mass error of zero.
Figure 4. Exact mass spectrum for caffeine.
Figure 1. Representative total ion current chromatogram of an extract of Sumatran coffee beans.
Chemometric AnalysisAlthough differences between each of the chromatograms in Figure 1 can be ascertained via visual inspection, a more complete comparison can be made through the use of a pattern recognition algorithm such as PLS. The resulting scores and loadings plots are presented in Figures 2a and 2b.
Figure 2. (a) scores and (b) loadings plots resulting from PLS analysis of UPLC/MS(TOF) data from coffee bean extracts.
Factor1
Factor2Factor3
Sumatra4
Kenya4
Panama2Panama4Panama5
Sumatra2
Sumatra3Sumatra5
Kenya1Kenya2Kenya3
Kenya5
Kona1
Kona2Kona3
Kona4
Brazil1
Brazil2Brazil3
Brazil4Brazil5
Panama1
Factor3
Factor1
Factor2.3_100.114.4_109.080.6_118.0668.2_569.4474.8_570.335.4_122.087.3_130.5305.1_570.42519.7_571.408.6_133.079.7_137.072.4_140.0779.4_572.4811.2_573.40119.9_143.061.6_149.0659.3_574.40419.7_575.41413.4_575.504.4_152.105.3_157.0839.4_576.449
12.0_577.425.4_160.084.9_163.0773.1_578.4113.1_579.4073.1_580.419.4_167.104.4_169.9787.0_581.42217.4_583.435.3_171.086.4_174.095.4_177.0936.1_585.4157.6_586.489.5_179.098
.7_181.1306.1_586.50315.9_587.448.6_187.089.6_191.092.5_193.10310.2_588.5031.2_590.425.3_195.034.6_195.1549.2_591.4059.2_592.4123.1_593.371.3_200.036.5_203.1139.6_593.42013.1_593.471.5_205.100.6_207.15513.8_593.5159.7_594.42813.4_594.516.3_212.019.3_214.0055.1_595.3877.4_595.437.5_216.110.6_219.113.6_222.1376.8_596.44019.8_597.457.4_224.095.3_226.14518.8_597.4539.7_598.448.7_229.139.6_231.117.5_234.15313.2_599.34510.2_599.492.9_236.116.4_238.01613.5_599.5217.8_600.49414.2_601.521.5_243.157.6_246.1245.1_602.4435.1_603.448.5_248.128.5_251.1633.5_605.4342.8_609.41419.8_610.186.4_255.129.5_257.1084.8_610.46615.4_610.542.6_258.12219.3_262.21714.0_611.5424.9_612.3462.1_263.2392.0_265.25113.5_612.54616.9_613.481.4_267.157.6_269.1261.2_270.26415.9_614.5246.2_615.414.5_272.130.6_274.14315.2_615.48613.3_615.50015.2_616.442.7_278.1751.0_279.17513.9_616.49915.7_618.45015.1_280.181.6_281.19015.8_619.4543.5_620.4513.5_621.455
2.0_282.275
.5_284.13215.0_622.41115.2_623.4103.3_285.303.6_289.125.5_292.15015.9_624.9272.9_625.458.6_295.2271.3_296.27914.1_625.53414.5_626.4901.9_297.291.5_299.1991.2_300.20611.4_627.52111.3_628.5251.6_301.296.4_306.1354.9_630.3446.2_631.41916.9_631.490.5_309.208.6_311.1544.0_632.4503.0_635.4173.0_312.29213.9_313.27319.8_635.54313.9_636.5543.0_637.463.5_317.1375.4_321.31615.7_638.4647.7_639.3732.8_322.3125.4_324.3281.7_326.30613.7_640.98710.0_642.481.5_328.1523.3_329.17819.7_644.46119.4_645.470.4_330.176.6_331.196.5_333.13712.5_648.4285.2_649.420.4_335.2202.9_336.2892.1_649.46313.7_650.53416.0_651.441.7_340.163.5_342.1403.3_652.4612.8_654.470.9_342.3051.1_345.2634.2_655.4707.7_657.36910.0_658.5022.2_348.322.5_350.17811.8_660.38413.5_662.9971.8_351.3124.0_352.336.5_355.15019.7_666.4933.0_668.4571.2_356.2811.2_357.27915.9_669.4404.2_674.445.5_358.2383.5_359.2785.0_361.2763.9_677.48512.4_679.3668.1_362.306.5_366.1609.2_680.46013.3_683.4843.0_684.495.5_369.1603.7_371.3163.0_686.4773.3_691.420.5_373.1942.1_375.30213.9_693.44015.7_695.3852.1_698.4572.1_379.2005.4_380.3746.5_701.3972.3_705.4648.5_381.38514.3_383.365.9_384.3852.2_714.46211.9_717.365.9_388.2126.3_391.33415.4_719.39016.0_722.3972.3_394.29915.1_395.3697.1_397.3857.2_728.3783.0_743.3921.0_398.40814.1_399.2952.1_750.3751.6_762.4761.1_766.5268.2_403.33413.7_407.2741.4_776.56711.3_792.65813.9_408.77412.5_410.74815.1_797.5993.3_804.5594.8_827.5362.1_415.2241.8_416.3382.0_850.82515.2_858.09313.1_417.3711.8_419.3332.0_423.2274.9_861.6661.6_875.72014.8_423.4322.1_425.23619.3_888.70511.9_893.0891.4_426.42715.3_429.374.6_431.3293.0_903.6783.0_912.612.6_432.24113.1_433.36713.9_917.22814.7_934.641
4.8_941.777
13.1_436.3043.0_437.2534.8_943.8524.9_947.7873.0_438.2353.0_440.2391.9_442.3522.9_444.3681.9_446.3443.2_450.260.6_453.16714.7_454.25719.3_454.3351.9_455.335.9_457.28013.1_457.393.8_459.3593.0_461.2122.1_462.2233.0_463.2243.1_464.2493.0_465.3474.0_467.3302.1_469.2574.3_470.2412.3_471.2325.7_471.3955.1_472.400.9_473.3753.0_474.3775.7_475.3895.1_476.3929.7_477.41413.1_479.37313.1_480.3781.1_482.3703.1_484.3361.4_485.1154.9_485.3761.3_486.380.6_487.3531.6_487.3911.2_488.3922.1_489.3424.9_489.4103.0_490.3913.0_491.3418.0_492.313.6_493.2878.1_494.3034.9_495.2208.2_495.3921.0_497.3425.0_498.4185.2_499.3928.2_499.428
7.7_500.426
.9_501.3688.1_501.4384.8_502.4274.5_503.3868.2_503.4237.7_504.42511.8_505.41411.8_506.41710.9_507.3843.0_509.3365.4_509.40011.4_510.4014.9_511.343
4.9_512.4132.3_513.2617.6_513.4075.3_513.4234.0_514.3743.1_514.4365.4_515.3864.9_515.4291.6_516.424
4.9_516.451
9.4_517.4373.3_518.41714.8_519.1404.9_519.4374.9_520.3927.7_521.408
7.7_522.4131.1_523.362.9_524.3551.5_525.3756.1_526.4388.2_527.4229.1_528.4193.0_529.3405.0_529.4463.0_530.37411.3_530.46319.8_531.3684.8_531.4387.6_532.4211.9_533.3893.7_533.3994.9_534.4045.1_535.406
14.6_535.41414.5_536.1634.9_536.41014.8_537.1666.2_537.39815.7_537.6706.1_538.40914.8_539.16615.7_539.43815.8_540.44714.9_541.1554.6_541.4264.6_542.4315.1_543.38610.2_543.45211.4_544.47110.2_545.431.9_546.4268.1_547.41510.2_547.4802.1_549.3849.9_550.6275.1_551.4106.1_552.42411.3_553.4349.6_554.46415.7_555.44212.7_556.4589.5_557.42014.8_558.10510.2_558.464
12.0_559.398
11.1_559.4164.8_559.48311.1_560.4204.9_560.48112.6_561.4283.1_561.43311.9_562.43213.1_562.4351.6_563.40515.4_563.4392.0_563.55112.6_564.4382.0_564.55719.5_565.4493.2_566.41919.8_567.4664.8_569.3386.8_569.420.4_104.10714.8_569.42214.2_569.4596.1_570.423.4_123.0851.0_131.05115.2_570.4336.5_571.429.4_134.077.5_137.110.4_141.10511.3_572.51315.6_573.463.4_144.069.4_149.08817.5_574.39711.4_575.450.3_151.047.4_153.103.3_158.11111.4_576.45113.5_577.507.5_161.073
12.0_578.42910.2_579.39419.4_580.448.3_167.983.4_170.08915.9_581.45417.0_583.480.7_171.150.7_174.0972.4_584.4735.1_585.4157.8_586.495.7_179.107.4_182.10817.4_586.51811.4_587.489.5_188.100.5_191.092.6_193.1187.8_588.51411.4_590.465.5_195.2311.2_591.42914.1_592.421.5_197.104.5_200.106.6_204.11311.4_593.42114.2_593.477.3_208.03913.4_593.51511.3_594.43113.8_594.518.4_212.116.4_214.0924.6_595.42512.6_595.438.4_216.120.5_220.11615.9_595.50115.4_596.44615.9_597.453.4_224.126.9_226.21910.3_597.4549.5_598.446.5_235.12112.0_599.4107.7_599.4921.5_236.117.6_238.12613.8_599.5227.7_600.495.5_241.113.5_244.117.5_246.15015.7_602.47517.4_603.541.6_248.131.7_251.1872.8_605.4414.3_609.4152.8_610.4191.7_255.214.6_257.0943.0_610.48515.7_610.542.5_258.174.3_261.1302.8_611.42313.8_611.5424.3_612.4621.6_263.2403.2_265.25319.3_613.18415.2_613.916.8_267.174.5_269.1272.2_270.28410.2_614.53114.1_615.429.6_272.1351.6_275.0342.1_615.4894.3_615.520.6_276.146.5_279.13115.2_279.17613.7_616.49915.8_618.44815.3_280.18216.1_281.1927.4_619.458.7_620.4631.5_621.472.5_283.127.6_284.13415.2_622.41215.8_623.427.5_286.138.5_289.13415.2_623.91315.7_624.92814.3_625.4851.3_295.276.5_297.13015.6_625.92414.3_626.491.5_298.141.6_299.1971.0_300.20816.5_627.5384.8_629.332.5_307.1224.8_630.4123.3_631.419.8_308.2011.6_309.292.5_311.22717.4_632.5601.1_635.4552.2_312.29913.7_313.2773.0_636.46215.4_636.55414.5_637.530.5_317.206.5_322.1233.6_638.4751.2_639.415.5_323.142.5_325.1447.7_640.37819.4_641.2138.2_642.5241.7_328.294.6_329.21219.4_644.46811.9_645.91215.5_330.221.6_331.227.5_333.1762.1_648.4564.0_649.4275.0_335.2781.6_336.2942.5_649.51513.5_650.5341.6_337.279.4_340.2295.5_342.1645.3_652.4594.2_654.472.5_343.1572.0_345.29119.8_655.4762.1_657.4344.3_658.5163.8_348.3281.9_350.3109.7_660.44613.7_663.0024.0_351.339.5_353.1392.5_664.4803.5_667.4342.1_668.5111.6_356.2902.4_357.3001.8_670.4663.1_674.4683.5_358.2763.9_359.3181.6_361.2921.7_678.3309.3_679.4457.3_363.2871.2_366.2272.5_681.5153.0_683.497.5_367.1551.2_369.3423.3_371.3193.1_686.54315.2_693.37311.3_373.244.5_376.1981.4_693.48015.7_696.3903.0_699.4711.0_379.295.6_381.1533.1_701.48510.3_705.473.5_382.16514.9_383.366.9_708.2952.1_715.3362.1_717.4591.7_388.2821.1_391.34012.6_719.39119.3_722.4166.5_394.726.5_396.17816.7_397.3871.7_731.5383.0_743.41115.7_398.74516.4_399.3903.0_751.3831.7_763.4781.7_401.4107.3_404.23413.5_407.77618.5_777.54911.3_793.6281.6_409.2064.0_411.26718.6_798.60818.6_804.5691.6_832.6071.8_415.33413.1_416.36613.1_853.70315.2_858.5952.1_418.2262.1_420.22715.7_860.61815.7_862.1154.9_883.6511.6_423.7701.3_425.23915.3_888.81311.9_893.5876.0_427.35810.2_429.3749.7_431.3543.0_905.6637.7_912.7043.0_432.25415.3_434.24619.3_917.66814.7_935.6768.1_434.32615.4_436.3275.1_437.3064.8_944.7884.8_948.7893.0_438.2653.0_440.2531.2_442.353.5_445.2092.9_446.3623.1_451.2643.0_453.2555.5_454.25914.8_454.3378.1_455.4013.0_457.2848.1_457.4088.1_459.394.6_461.2693.2_462.2652.1_463.2265.0_464.2813.9_465.3493.0_467.3362.9_469.2933.0_470.336.6_471.3201.7_471.3965.3_472.3993.3_473.385.9_474.3815.3_475.3914.9_476.393.6_478.2191.4_480.1611.4_481.1601.9_482.3744.0_484.3562.1_485.2121.3_485.3784.9_486.381.8_487.3553.0_487.3931.1_488.392.8_489.3542.9_489.4611.1_490.3993.0_491.3635.0_492.3668.1_493.3163.0_494.3671.6_495.2291.6_496.2274.9_497.4037.7_498.4226.1_499.3949.3_499.4281.1_501.368.5_502.2857.6_502.4344.9_503.3894.9_503.43113.1_504.4267.6_505.4241.2_507.3336.1_507.3945.0_509.35111.4_509.4003.1_510.4051.1_511.3802.1_512.4163.9_513.3217.7_513.4075.1_513.4246.8_514.4109.6_514.4402.0_515.4203.1_515.4406.1_516.4253.0_517.3675.1_517.4501.6_518.4249.4_519.4421.6_520.4197.6_521.4087.6_522.4133.0_523.3651.5_524.3717.7_525.41411.8_526.4679.0_527.4223.1_528.4231.4_529.3962.1_529.4434.8_530.3897.7_530.4641.3_531.40911.4_531.4533.8_532.4471.3_533.3945.4_533.4385.1_534.4036.8_535.38915.7_535.41514.8_536.1645.1_536.4112.1_537.3386.1_537.40514.5_538.16415.2_538.4293.0_539.35714.8_540.1638.1_540.453.5_541.29910.2_541.43714.2_541.46111.3_542.4428.5_543.4217.8_543.461
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.7_195.087
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12.5_561.423
8.1_561.4321.6_561.48215.4_562.434
6.1_562.45612.6_563.43715.9_563.445
10.2_564.42315.7_564.45010.2_565.42419.8_565.46119.8_566.46514.2_568.4387.2_569.419Y1.3_107.063.3_114.09217.5_569.43818.5_569.489.4_120.066.4_127.0447.2_570.42411.4_570.49115.8_571.440.6_136.077.4_139.07615.8_572.45317.4_573.393.3_143.0591.0_147.118.9_151.0469.2_575.388
13.8_575.503
.3_152.046.9_155.1193.6_576.41713.4_576.5074.9_160.078.7_162.094.3_164.1091.0_579.38212.5_579.441.6_166.091.4_169.0799.5_580.45119.4_582.4678.5_584.4461.1_173.089.5_176.0822.6_585.4144.0_586.418.6_178.091.5_181.09210.2_586.4942.9_587.4317.6_587.516.5_192.1536.6_588.46319.4_589.462.6_194.1171.3_195.092.3_197.02014.5_591.47614.5_592.479.5_199.105.5_202.0985.2_593.41915.4_593.456.4_205.019.5_207.112.5_209.1075.2_594.42416.0_594.497.6_211.092.5_213.1701.0_595.3686.8_595.43615.7_595.495.6_218.117.3_222.0197.7_596.37914.2_597.395.6_223.178.3_226.02619.4_597.4527.7_598.38018.8_598.4607.7_598.52115.9_599.474.7_237.119.5_240.11711.9_600.4667.4_601.444.5_243.1181.6_245.22912.4_602.430.9_603.441.5_247.155.5_250.135.6_252.17716.9_608.52416.9_609.5191.4_254.2521.7_256.2176.2_610.43913.8_610.5414.9_611.340.5_260.130.6_262.17916.0_611.48719.4_612.185.6_263.1331.6_264.24313.9_612.5436.5_613.4502.1_614.4041.6_268.266.5_270.12411.4_614.5212.1_615.405.6_271.114.5_274.099.5_276.14014.0_615.4962.1_616.416.6_277.21611.4_279.1741.6_616.49119.8_617.515.5_280.167.7_281.18515.9_281.19214.5_619.50814.9_621.4081.0_282.1952.0_283.28314.9_621.91515.2_622.91319.8_623.524.6_288.130.5_290.20215.8_624.42615.7_625.4281.6_294.2801.0_296.18014.5_625.4865.1_626.44316.9_626.535.5_299.094.6_300.1435.1_627.4454.8_628.456.5_301.128.5_304.149.3_308.1962.8_631.39813.7_631.474.5_309.1233.3_310.3122.8_632.39613.8_634.536.5_312.1447.2_313.181.6_315.12719.9_636.54615.8_636.942.5_316.210.6_321.13519.4_638.21619.3_639.21619.4_640.2173.2_324.292.5_326.14819.8_640.5027.1_641.4941.8_327.310.6_329.17315.6_643.96812.5_645.44412.4_647.428.5_331.134.5_332.17915.5_648.42412.4_648.9285.0_334.276.5_336.143.5_337.1532.9_650.450.7_651.2245.4_339.3471.5_341.17413.5_651.5373.3_653.465.6_342.259.5_345.1641.2_346.2742.1_656.4313.0_658.4431.2_348.2753.8_349.3339.0_659.48712.5_662.46215.9_664.4755.4_352.323.5_354.2133.0_666.46211.3_668.407.5_356.147.7_357.1447.1_668.5432.1_673.4455.4_675.6727.6_359.2295.2_360.2909.7_677.3652.1_678.5041.2_362.211.9_365.139.4_367.06013.8_683.48317.1_684.218.5_368.167.4_371.17317.3_685.2023.2_689.5003.5_372.2935.0_375.3022.1_377.19816.0_694.52215.8_697.4022.1_378.1982.1_380.1923.0_700.43110.0_704.48719.8_707.4852.1_383.1895.4_383.4021.7_709.5531.7_716.571.5_386.1823.0_391.2853.2_718.47915.9_721.39819.8_724.47215.0_395.3681.2_397.2943.0_727.4274.9_737.55516.4_398.386.6_399.2533.9_401.35314.6_759.5747.7_765.5811.7_402.7553.4_406.2961.1_771.47811.3_783.5731.6_408.1924.9_410.3303.9_412.2733.3_803.5531.1_811.55910.0_414.348.6_416.21513.1_838.72315.2_857.09515.7_860.1186.7_419.2732.1_422.21715.6_861.61815.4_870.6087.3_423.3267.3_424.3322.9_885.7203.0_891.70511.9_894.583.7_429.31915.4_430.38212.5_897.6187.7_911.68413.1_431.3543.0_433.2575.1_434.2933.0_918.7234.9_939.7752.1_436.231.6_437.1994.8_943.7833.0_946.588.6_438.1791.4_439.3331.9_441.3492.9_443.36415.3_445.3682.1_449.2485.0_452.27319.3_454.25616.1_454.3343.0_455.2451.8_456.3601.8_457.366.6_459.3211.8_460.3883.8_461.3731.8_462.378.8_463.3535.0_465.280.5_467.1972.1_468.3688.1_469.3815.0_470.386 4.9_471.3842.3_472.2342.9_473.340.7_474.3343.0_475.36113.7_475.8628.1_477.3825.4_479.2953.0_480.3217.1_482.32612.0_483.43311.9_484.4361.1_485.3745.4_485.8612.1_487.3213.8_487.389.8_488.3561.9_489.3291.1_489.3962.1_490.3208.1_491.31310.5_491.8613.0_492.3655.1_493.3774.9_494.3824.9_495.3843.0_497.3311.6_498.239.8_499.3538.1_499.4273.0_500.35710.5_500.8597.7_501.4341.3_502.415.9_503.3777.6_503.4224.9_504.393.9_505.3643.0_506.3723.0_507.3706.1_508.3951.1_509.3721.1_510.3762.1_511.15916.0_511.46316.0_512.4675.6_513.4058.3_513.4119.6_513.4435.0_514.426.9_515.3497.7_515.4225.4_516.3907.7_516.4426.1_517.4201.1_518.3731.6_518.4504.9_519.393.8_520.3553.9_521.39313.1_522.4042.1_523.32913.6_523.4213.3_525.3626.0_526.3715.1_527.387
11.4_527.455
11.9_528.4881.6_529.4014.0_530.2965.0_530.439.9_531.3457.6_531.4195.4_532.4193.0_533.32717.5_533.3972.1_534.3763.0_535.382
15.5_535.4144.9_535.8381.6_536.39614.2_536.4207.6_537.38716.0_537.4307.7_538.39116.1_538.4359.5_539.41415.7_540.4447.4_540.4781.6_541.3978.5_541.454.5_542.3134.9_542.47210.2_543.4449.4_544.4371.6_545.3958.1_545.4891.6_547.40910.2_547.4467.6_548.42517.3_550.4366.8_551.36515.2_552.4189.2_553.40115.2_554.43015.1_555.4285.4_556.4123.6_557.3997.7_557.47911.3_558.4431.7_559.3819.7_559.4151.6_559.4659.7_560.4196.1_560.4779.7_561.42414.8_561.43311.8_562.36115.2_562.4351.6_562.4807.6_563.437
19.8_563.447
15.5_564.42919.4_564.4503.2_565.42411.1_565.46311.0_566.4678.2_568.4476.3_569.419Y2.3_108.081.3_116.1073.1_569.4442.0_569.564.4_121.077.3_128.14414.5_570.4254.9_571.3774.9_571.459.4_137.072.7_139.0774.9_572.46314.2_573.39519.3_143.061.4_148.08411.4_573.5193.6_575.40914.0_575.503.3_156.13512.0_576.4191.3_577.385.7_160.079.4_162.105.5_165.0879.2_579.40410.2_580.397.4_166.115.8_169.97815.9_580.45013.4_582.501.3_171.0361.0_173.097.6_176.0925.7_585.4156.1_586.421.6_178.128.5_181.12911.3_586.5041.1_587.44817.5_587.523.6_190.094.3_193.06710.2_588.49212.0_589.464.4_194.122.4_195.1049.2_591.3995.1_592.4061.0_593.369.3_199.113.6_202.10512.0_593.4194.8_593.468.6_205.098.3_207.155.5_209.1643.6_594.42416.0_594.501.4_211.137.6_213.1961.2_595.3761.0_595.437.4_215.123.5_219.110.5_222.1177.4_596.4397.4_597.443.3_224.010.6_226.09510.8_597.45214.2_598.41119.4_598.465.5_231.116.6_234.1197.6_598.52219.9_599.490
.7_236.114
1.9_237.22314.1_599.51919.9_600.4907.8_601.491.6_243.1194.0_602.4424.0_603.449.5_248.09715.1_251.158.4_253.1073.0_609.37219.4_610.184.7_255.1161.9_256.2658.2_610.44613.4_610.541.5_258.124.6_260.13315.3_262.21213.3_611.54119.8_612.1861.4_263.238.5_265.12913.7_612.5474.3_613.46514.1_614.419.5_269.094.4_270.15814.2_614.5223.6_615.403.5_272.0953.9_615.48615.5_615.497.8_616.435.5_278.14112.0_279.17513.5_616.4981.0_618.449.9_280.1791.0_281.1892.1_281.24914.3_619.51115.2_621.41015.7_282.198.5_284.097.9_622.3869.2_623.396.5_285.129
.5_288.138
.5_291.13115.7_624.4286.2_625.446.5_295.1581.9_296.26114.7_625.48714.5_626.44611.3_626.560.5_299.131.5_300.1404.0_627.4447.4_628.457.6_301.210.5_305.1374.8_629.4602.1_631.39716.5_631.489.7_309.205.5_311.1485.1_632.429
19.8_634.540
.6_312.1581.4_313.182.6_315.18319.7_636.5442.1_637.3881.0_316.2851.4_321.29215.5_638.4647.6_639.3711.4_322.2922.0_324.3101.3_326.2733.0_640.5151.2_642.4422.0_327.3394.8_329.1773.5_644.4504.0_645.4568.1_647.481.4_331.1812.3_332.2925.1_648.42712.5_648.9292.8_334.312.5_336.2211.4_649.45515.9_650.4412.8_651.444.5_340.1561.6_341.31816.0_651.9531.7_654.3351.6_342.3044.9_345.2146.1_346.7142.8_656.4562.1_658.4785.1_348.291.5_350.1384.4_659.49819.8_662.5742.1_351.220.5_352.3245.4_354.35719.9_666.492.6_668.403.5_356.216.5_357.21211.3_669.4132.1_674.44012.0_676.3517.7_359.2302.1_360.2908.9_677.4421.7_679.3385.0_362.2795.4_365.35312.5_680.37513.5_683.48419.3_684.2401.2_368.316.5_371.2149.2_686.4246.1_690.4381.6_372.3133.2_375.3011.6_377.26815.8_695.3852.1_697.4531.6_378.2741.5_380.3303.1_700.4775.0_704.5115.4_381.3763.0_383.26614.6_384.3725.1_711.3642.1_717.3346.3_387.3493.3_391.2872.1_719.33415.9_722.4081.1_724.5156.3_395.36916.4_397.3837.2_728.3464.8_738.5587.1_398.38715.8_399.2543.0_749.3878.1_760.5711.1_766.4881.2_403.2312.1_407.21719.7_775.47114.7_784.5842.1_408.22112.6_410.42014.5_412.37118.5_803.5631.3_820.595.6_415.2112.1_416.2264.9_850.61315.2_857.59411.8_417.2281.2_419.2793.0_422.28815.7_861.61915.3_871.11716.0_423.40016.0_424.4042.9_886.72711.9_892.59612.5_896.1122.3_429.351.5_431.16615.9_899.7613.0_912.58915.2_431.3822.1_433.26319.3_913.8182.9_930.7704.9_940.7713.0_436.2492.1_437.2114.8_943.8114.9_946.778.6_438.2178.3_439.39316.0_441.410.9_444.312.5_446.2172.9_449.3654.0_452.29413.5_454.25614.0_454.3353.0_455.2628.1_456.4043.8_457.3782.9_459.3588.1_460.4021.8_461.3821.4_463.1331.4_464.1342.1_465.3445.1_467.2741.5_468.3813.3_469.3824.9_470.3885.1_471.3953.1_472.3793.1_473.3742.9_474.34013.7_475.3622.9_476.3534.9_477.4003.0_479.3271.3_480.3633.0_482.33510.5_483.85612.0_484.4365.1_485.3753.0_486.273.8_487.3484.9_487.3903.0_488.3843.0_489.3356.1_489.4063.0_490.335.8_491.3468.1_492.3111.1_492.3891.1_493.3951.0_494.4005.1_495.3882.1_497.3313.8_498.4091.3_499.3892.8_499.428.7_500.3714.9_501.3717.8_501.4342.9_502.4173.3_503.3857.6_504.4253.3_505.3943.9_506.375.9_507.376.5_509.2473.7_509.3723.0_510.3783.0_511.3414.0_512.3874.9_512.6436.8_513.406
4.9_513.422
8.1_513.4634.9_514.4291.1_515.3845.0_515.4265.4_516.4045.1_516.4511.6_517.4268.1_518.4074.8_518.4751.6_519.4165.0_520.39713.1_521.4028.0_522.411.9_523.35111.9_523.4276.0_525.3714.9_526.4366.8_527.40811.9_527.45812.0_528.4891.9_529.4034.0_530.3404.9_530.4443.0_531.3647.7_531.4194.0_532.420.9_533.3615.1_533.3991.3_534.3992.1_535.384
14.2_535.4142.1_535.8386.8_536.39314.6_536.4201.6_537.40415.3_537.4721.6_538.40715.9_538.47715.8_539.438
7.7_540.44614.8_541.13711.1_541.402
7.7_541.454
10.9_542.395.5_543.30811.4_543.4486.1_544.4521.1_545.4251.2_546.4001.2_547.4037.8_547.479.9_549.35511.4_550.4443.7_551.40215.0_552.41915.2_553.42515.7_554.43515.8_555.44115.7_556.4469.2_557.3997.6_557.4806.8_558.4643.6_559.40911.8_559.4156.8_559.46511.4_560.4191.6_560.47811.9_561.42415.7_561.4338.1_562.3937.7_562.4352.1_562.48312.5_563.4386.1_563.4627.7_564.43715.9_564.44916.1_565.44614.7_566.1923.8_567.407
11.4_568.481
7.4_569.420
.5_261.122
7.8_541.455
.4_110.060.5_163.082
.5_195.079
.5_206.110.4_229.140
.5_232.116
.5_302.141
7.8_500.427
.5_519.315
12.0_559.408
.5_204.105.5_259.123
7.8_540.448
7.8_544.482
.4_138.064.5_180.107.5_196.092.5_233.114
.5_313.178
.5_370.194
7.8_499.418
.5_218.108
.5_237.118
15.8_537.428
15.8_538.43312.0_560.418
.5_190.091.5_230.127.5_234.120
.5_236.110
.4_152.073.5_246.121.5_274.1327.7_503.422
Samples5 10 15 20 25
%
0
100
4.470e+004
Kenya
Brazil Kona
Sumatra
Panama
Samples5 10 15 20 25
%
0
100
4.470e+004
Kenya
Brazil Kona
Sumatra
Panama
Other Components in CoffeeAlthough caffeine is one of the more dominant compounds, it is but a small fraction of the other classes of compounds found in coffee bean extracts. Using this metabonomic approach we have been able detect many other markers of geographic origin including plant sterols, an example of which is m/z = 535.40. The trend line for this marker (Figure 5) indicates that, like caffeine, it is present at higher levels in Sumatran coffee.
Figure 5. Trend line for m/z = 535.40, a proposed sterol derivative in coffee bean extracts.
Samples
CONCLUSION
The application of metabonomics to non-mammalian samples has been successfully illustrated by the analysis of whole, roasted coffee bean extracts from different areas of the world. We have demonstrated that the UPLC/MS(TOF)-based approach allows for a rapid and sensitive analysis. The high mass accuracy of the LCT Premier coupled with the superior chromatographic resolution afforded by the ACQUITY UPLC System has facilitated the identification of several markers of interest, such as caffeine and sterol derivatives, which has been successfully confirmed by exact mass.
5 10 15 20 25
%
0
100
2.492e+005
Kenya
BrazilKona
Sumatra
Panama
Samples5 10 15 20 25
%
0
100
2.492e+005
Kenya
BrazilKona
Sumatra
Panama
Waters, Micromass, Ultra Performance LC, UPLC, LCT Premier, Woptics, LockSpray, MarkerLynx, and MassLynx are trademarks of Waters Corporation.All other trademarks are property of their respective owners. ©2004 Waters Corporation Produced in the U.S.A.Nov. 2004 720001058EN KJ-PDF