neon aquatic program
DESCRIPTION
NEON aquatic designTRANSCRIPT
04/12/2023
The Aquatic Program at NEONCharlotte Roehm
Assistant Director of Aquatics and STREON
July 14th 2014 http://www.neoninc.org
Aquatic STREON Team
Brandon McLaughlin – Aquatic Design Technician Jenna Stewart – Science Technician – Training and Databases Brandon Jensen – Associate Scientist - Permitting - Aquatic Ecologist Charles Bohall – Instrumentation Engineer - Hydrologist Jesse Vance – Instrumentation Engineer - Oceanographer Michael Fitzgerald – Groundwater Hydrologist - Engineer Keli Goodman - Aquatic Biogeochemist Stephanie Parker – Aquatic Ecologist Charlotte Roehm – Limnologist/Assistant Director Ryan Utz – STREON Aquatic Ecologist
Aquatic STREON Team
Observing Ecological Change
• Representative sampling
• Standardized methods across domains
• Standardized and transparent protocols
• Continental in scope – distributed over 20 domains
• Detecting/attributing change over decades
• Comprehensive set of observations
• Field and lab analyses state-of-the-art
• QA/QC -- data quality and uncertainty
NEON’s Scientific/Systems Engineering Approach
Environmental Science Questions(Hypothesis Based Questions)
Identify Needed Information(What are the Data Products?)
Science Requirements(Science Sub-System Requirements)
Technical and Design Requirements (e.g., for Engineering, CyberInfrastructure)
REQUIREMENTS
I NFORMA T I ON
Grand Challenge Science Questions
Raw Data Collection
NEON Observation PlatformsAirborne Observations
Terrestrial Instruments
Terrestrial Observations
Aquatic Instruments & Observations
Aquatic Program at NEON
36 Aquatic Sites
25 Wadeable Streams
3 Large Rivers
8 Lakes
10 STREON sites
*~2/3 of AQU sites co-located with terrestrial sites.
Aquatic Program at NEON
Aquatic Organismal & Biogeochemical Observations
Biomass
Species% Cover
AbundanceBiomassChemistry
AbundanceBiomassChemistry
BiogeochemistryEcohydrology
Pools/fluxes
Invertebrates
Phytoplankton
Aquatic Plants DiversityPhenologyDiversity
Diversity
Riparian
Microorganisms
Zooplankton
AbundanceBiomass
FishDensityDiversity
AbundanceDiversity
PhenologyDiversityAbundanceFunction Sediment
Chemistry
GroundwaterChemistry
Stream Site Layout
Lake Site Layout
Site Layout Overview – STREON
Chemistry – Isotopes/Dissolved gases– Surface water– Groundwater – Reaeration– Sediment
Biology– Riparian vegetation– Invertebrates– Aquatic Plants– Algae– Zooplankton– Fish– Microbes
Stream Discharge Morphology
In-stream/In lake– Pressure Transducers– Multisonde: Twater, DO, Turbidity,
pH, Conductivity, fDOM– Nutrient Analyzer (NO3-)– PAR (streams only) and PARu (lakes only)
Near-Stream/buoy – Micrometeorology– Tair, Precipitation, BP, PAR, Net Radiation– Wind speed and direction– Camera
Inlet/Outlet Lakes– Level, PARu, Temperature
Groundwater– Temperature, Level, Conductivity
Aquatic Measurements Observational ComponentInstrumentation Component
Aquatic Microbial Measurements and Associated Data Products
Protocol Analysis Analyte Data ProductMicrobes (Water)
Genetic/Pathogen - Surface Water
16S/ITS rDNA
Taxonomic diversity indices for microbes
qpcr
Abundance of microbes
mRNA/functional assay
mRNA sequence data functional composition
DNA (metagenome)
DNA sequence data
Biomass (cell counts)
Quantitative abundance of different groups of microbes in surface water
Genetic/Pathogen - Benthic Biofilm
16S/ITS rDNA
Taxonomic diversity indices for microbes
qpcr
Abundance of microbes
mRNA/functional assay
mRNA sequence data functional composition
DNA (metagenome)
DNA sequence data
Biomass (cell counts)
Quantitative abundance of different groups of microbes in benthic samples
Microbes (Water) DNA Extract Museum Services
Chemistry – Isotopes/dissolved gases 26 x/yr 12 x/yr – Surface water 26 x/yr 12 x/yr – Groundwater 2 x/yr 2 x/yr– Sediment Chemistry 3 x/yr 3 x/yr– Reaeration 6 x/yr NA
Biology– Riparian vegetation 1 x/yr 1 x/yr– Invertebrates 3 x/yr 3 x/yr– Aquatic Plants 3 x/yr 3 x/yr– Algae 3 x/yr 3 x/yr– Zooplankton NA 3 x/yr– Fish 2 x/yr 2 x/yr– Microbes 12 x/yr 6 x/yr
Stream Discharge 12 x/yr NA Morphology 1 x/yr 1 x/yr
Sampling FrequencyStreams Lakes
Aquatic Sensors
• Thermometrics PRT Temperature• Gill - WindObserver II 2D Wind speed and direction• Viasala – PTB330 Barometric Pressure • Hukesflux – NR01 Net Radiation SW/LW IR• Kipp & Zonen PQS1 Above water PAR• StarDot Netcam SE Camera
• YSI Multisonde (EXO2) pH/ORP, water temperature, spec. conductivity, dissolved oxygen, turbidity, chlorophyll, fDOM
• Thermometrics PRT Water temperature • In-Situ LevelTroll 500 Water temperature, pressure (level)• Kipp & Zonen PQS-1 Above water PAR• Li-Cor LI-192SA Underwater PAR – 1 upward and 1 downward looking• Satlantic SUNA V2 Nutrient Analyzer NO3
• In-Situ AquaTROLL 200 Water Temperature, Pressure (level), Spec. Conductance• In-Situ LevelTROLL Water Temperature, Pressure (level)
Arikaree River, CO
Prototype deployment
Aquatic Sensor Infrastructure Designs
18ASLO Feb 20th 2013
Major AQU Tasks
SCI TEAMS, DPS, SYS ENG THROUGHOUT
• CVAL: Calibration/Validation Group• ENG: Engineering Team• CI: Cyberinfrastructure• IT: Information Technology• ATBD: Algorithm Theoretical Basis Document
19ASLO Feb 20th 2013
Key AQU InterfacesDivision Key Interfaces
ENG/SYS ENG Assembly level requirements Capture, C^3, V+V test approaches, process
Permitting and Safety Safety, permitting, Soft Site Resolution
Science/Data Products Quality assurance; algorithm revision / development; support data product development; publications and community engagement
Calibration/Validation Design Traceability and Uncertainty approaches and processes; analyze results
Cyber-Infrastructure Algorithm Development and Data Management tools
Education & Outreach Provide scientific and technical support as needed
• Standardized sensor sets and sampling methods to use at all sites
• Standardized temporal sampling strategy to use at all sites
• Continuous monitoring (sensors), consistent terminology
• Quantifying uncertainty, data quality standards, metadata standards
• Consistent QA/QC, verification, NIST traceable calibrations
Blacktail Deer Creek, WY
Challenges
Science Validation
What is Science Commissioning?
Essential Function of Project Science Office
Crucial Coordination with Systems Engineering
Steve Berukoff
22ASLO Feb 20th 2013
Thank You
QUESTIONS?
What is Science Commissioning?• Science Commissioning & Validation (SCV)
– Ensure that a system that functions at an engineering level (SYE-accepted) moves to a system that meets the scientific requirements for • Robustness• Sensitivity• Uncertaintyas quantitatively traceable to higher-level science questions.
– Answers the question: “Does NEON’s as-built implementation satisfy its scientific goals?”
– Test• every measurement & data product against scientific design• within systems engineering framework• under schedule/budget/external deadlines
Steve Berukoff
PARTNERSHIP CLIMATECZ.1.07/2.4.00/31.0056
1. Science Requirements/Questions
2. Traceability of Measurements
3. Data Product Algorithms
4. Enviro-Informatics (e-infrastructures)
Extensibility - Science ScopeSpatial and Temporal InferenceEmergent Community PracticesUncertainty budgets
Community Best Practices“consistent and compatible”Joint data assimilation intercomparisonUncertainty budgets
Use of Recognized StandardsIntercomparisonsUncertainty budgets
Standards - Data FormatsStandards - Metadata formats Spatial and temporal reference tags**Controlled vocabularies
Interoperability– Information Infrastructure
PARTNERSHIP CLIMATECZ.1.07/2.4.00/31.0056