facs diva training garvan mlc flow cytometry facility

49
MLC Flow Cytometry Facility BD FACS DiVa Training Flow Cytometry

Upload: robert-salomon

Post on 02-Jul-2015

1.106 views

Category:

Education


1 download

DESCRIPTION

Garvan MLC flow Cytometry Facility guide to using Facs DiVa

TRANSCRIPT

Page 1: Facs DiVa training Garvan MLC Flow Cytometry Facility

MLC Flow Cytometry Facility

BD FACS DiVa

Training

Flow Cytometry

Page 2: Facs DiVa training Garvan MLC Flow Cytometry Facility

Login

• Windows Login • User - Administrator

• Password – BDIS or bdis

• DiVa Login• Username - 3 letters first name + 3 letters last name

• Password – as user name

YOUR DISCIPLINE HERE

Page 3: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Overview

Page 4: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Overview

Browser

Window

Page 5: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Overview

Browser

Window

Cytometer

Window

Page 6: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Overview

Browser

Window

Cytometer

Window

Worksheet

Window

Page 7: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Overview

Browser

Window

Cytometer

Window

Worksheet

Window

Acquisition

Dashboard

Page 8: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Overview

Browser

Window

Cytometer

Window

Worksheet

Window

Acquisition

Dashboard

Inspector

Page 9: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Overview

Browser

Window

Cytometer

Window

Worksheet

Window

Acquisition

Dashboard

Inspector

Page 10: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Overview

Browser

Window

Cytometer

Window

Worksheet

Window

Acquisition

Dashboard

Inspector

File menu

Page 11: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows -Browser

Organises

data in a

hierarchical

and ordered

manner

Page 12: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows - Browser

Page 13: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows - Browser

Page 14: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows - Cytometer

Status - instrument errors

( turns red)

Parameters – controls PMT

amplification and signal

collection

Threshold – controls triggering

Laser – Laser delays and

scaling

Compensation – acquisition

defined compensation

matrix

Ratio - ???

Page 15: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows - Cytometer

Page 16: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows -Cytometer

Parameter

name

Page 17: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows - Cytometer

Page 18: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows - Cytometer

Page 19: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows - Cytometer

Page 20: Facs DiVa training Garvan MLC Flow Cytometry Facility

Worksheets• Global worksheet

• Is not linked to specific data source

• Reloads data on tube selection

• Used when batching

• Different global worksheets can be linked to different

specimens

• Sheet • Is linked to data

• Does not refresh upon tube selection

• Compensation • Is linked to compensation tubes

• Must be used to perform acquisition compensation

Page 21: Facs DiVa training Garvan MLC Flow Cytometry Facility

Worksheets

Page 22: Facs DiVa training Garvan MLC Flow Cytometry Facility

Visualising Signal Data

Dot

plot

Histogram

Density

plot

Contour

plot

Statistical

measures are

also used to

identify

changes

Page 23: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows - Acquisition

Dashboard

Page 24: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows - Acquisition

Dashboard

Page 25: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows - Acquisition

Dashboard

Page 26: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows - Acquisition

Dashboard

Page 27: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows – Inspector

Page 28: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows – Inspector

Page 29: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows – Inspector

Page 30: Facs DiVa training Garvan MLC Flow Cytometry Facility

DiVa Windows – Inspector

Page 31: Facs DiVa training Garvan MLC Flow Cytometry Facility

Creating a New Experiment

Page 32: Facs DiVa training Garvan MLC Flow Cytometry Facility

Creating a New Experiment

Page 33: Facs DiVa training Garvan MLC Flow Cytometry Facility

Creating a New Experiment

Page 34: Facs DiVa training Garvan MLC Flow Cytometry Facility

Compensation Workflow

Page 35: Facs DiVa training Garvan MLC Flow Cytometry Facility

Compensation Workflow

Page 36: Facs DiVa training Garvan MLC Flow Cytometry Facility

Compensation Workflow

Page 37: Facs DiVa training Garvan MLC Flow Cytometry Facility

Using the Layout editor

Page 38: Facs DiVa training Garvan MLC Flow Cytometry Facility

Using the Layout editor

Page 39: Facs DiVa training Garvan MLC Flow Cytometry Facility

Using the Layout editor

Page 40: Facs DiVa training Garvan MLC Flow Cytometry Facility

Fluidics Startup/Shutdown

Canto I, Canto II and Aria only

Page 41: Facs DiVa training Garvan MLC Flow Cytometry Facility

Fluidics Startup/Shutdown

Canto I, Canto II and Aria only

Page 42: Facs DiVa training Garvan MLC Flow Cytometry Facility

Fluidics Startup/Shutdown

Canto I, Canto II and Aria only

Page 43: Facs DiVa training Garvan MLC Flow Cytometry Facility

Acquiring data

• Activate tube to collect data

• Hit acquire

• Check stopping gate and numbers

• Hit record

• Hit remove tube

• Remove tube and flick aspirator arm to left

• repeate

Page 44: Facs DiVa training Garvan MLC Flow Cytometry Facility

Exporting Data

Page 45: Facs DiVa training Garvan MLC Flow Cytometry Facility

Exporting Data

Page 46: Facs DiVa training Garvan MLC Flow Cytometry Facility

Exporting Data

Page 47: Facs DiVa training Garvan MLC Flow Cytometry Facility

Cleaning Instrument

1. Run 10 % fresh bleach soln. – 5 mins*

2. Run 4 % extran – 5 mins

3. Run distilled water – 5 mins

4. Shutdown if no other users in the day

* For Biohazardous samples

Page 48: Facs DiVa training Garvan MLC Flow Cytometry Facility

Troubleshooting

Page 49: Facs DiVa training Garvan MLC Flow Cytometry Facility

Troubleshooting