eukaryotic microorganisms and viruses - pmbio.icbm.de · pdf fileeukaryotic microorganisms and...
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Katarzyna A.Katarzyna A. PaliPalińskańskaGeomicrobiology,
ICBM,CvO University of Oldenburg, Germany
Email: k.palinska@uniEmail: [email protected]
Eukaryotic microorganismsEukaryotic microorganismsand virusesand viruses
--AlgaeAlgae--
3.45 bya =
Cyanobacteria appear and introduce photosynthesis
1.5 bya =
first Eukaryotes appeared
400-500 mya = plants on land
Brief history of photosynthetic Brief history of photosynthetic organisms on earth…organisms on earth…
BotanyBotany = study of plants
PhycologyPhycology = study of algae (Latin)
AlgologyAlgology = less correct (close to the study of pain)(Greek)
alga (singular)
algae (plural)
algal (adj.)
“algaes” (wrong!)
•Photosynthesis (photoautotropic, usually), using Chl a asprimary pigmentBUT: Limited cellular differentiation compared toterrestrial plants
•no “real” vascular system
•sex organs unicellular or if multicellular -> “naked”“naked” reproductive structures (no sterile layer ofcells surrounding sex organs)
•In some cases: all cells capable of reproduction
•MUCH greater diversity of photosynthetic pigments
Defining characteristics of Defining characteristics of algaealgae
• several groups of relatively simple living aquatic organisms that capture light energy through photosynthesis, using it to convert inorganic substances into organic matter.
• polyphyletic group = different ancestors, differentevolutionary histories
•algae group includes prokaryotes (cyanobacteria) AND eukaryotes (green, brown, red algae) – traditional approach
• green, red, and brown algae are now thought to be in different kingdoms (some biologists place greens in Plantae)
What are algae?What are algae?
Separated from animalsSeparated from animals
• Algae produce spores (asexual reproductive • Algae produce spores (asexual reproductive cells) as wellcells) as well aas gametes (sexual cells).s gametes (sexual cells).
• Animals produce only gametes.• Animals produce only gametes.
LevelLevel: : suffixsuffix:: exampleexample::
Kingdom Kingdom ProtistaProtistaPhylum/Division Phylum/Division --phyta phyta ChlorophytaChlorophytaClass Class --phyceaephyceae ChlorophyceaeChlorophyceaeOrder Order --ales ales UlotrichalesUlotrichalesFamily Family --aceae aceae UlvaceaeUlvaceaeGenus Genus UlvaUlvaSpecies Species fenestratafenestrata
Algal taxonomyAlgal taxonomy• • KKing ing PPhillip hillip CCame ame OOverver FFor or GGood ood SSpaghettipaghetti• • KKeep eep DDishes ishes CClean lean OOr r FFamilyamily GGets ets SSickick
Hierarchical system of Hierarchical system of classification…classification…
Taxonomy/Taxonomy/systematicssystematicsconstantly underconstantly under
revisionrevision
-- depending on whodepending on whomm you ask, between 50,000 andyou ask, between 50,000 and10 million different algal 10 million different algal sppspp!!
How to define species???How to define species???
-- Biological species concept?Biological species concept?--Morphology?Morphology?
--Genetics?Genetics?
EUKARYOTES
PROKARYOTES
Five Kingdoms
“Crown species”
Monera
Protoctista
fungi
Animals pl
ants
1 23
4
5
4
1
2
3
5
The CellThe Cell
Prokaryotic Eukaryotic
AutofluorescenceAutofluorescence of algal and of algal and cyanobacterialcyanobacterial cellscells
Classification of Classification of phototrophicphototrophic organisms organisms in terms of energy and carbon sources. in terms of energy and carbon sources.
Types Types of of algal bodyalgal body
unicellular colonial filamentous
foliar tubular Blade-like, kelp
Leafy axis
Bold, HC and Wynne, MJ. Introduction to the algae, Prentice-Hall, Inc.New Jersey.
Sexual Sexual reproduction reproduction of of algae algae and and nonalgal plantsnonalgal plants
Uniting gametsgamets of a unicellular alga
Unicellular gametangiagametangiaof a filamentous alga
Multicellular gametangiumgametangium
ArchegoniumArchegonium(liverwort)
AntheridiumAntheridium(liverwort)
Bold, HC and Wynne, MJ. Introduction to the algae, Prentice-Hall, Inc.New Jersey.
Sexual Sexual reproductionreproduction
Isogamy (zygote)
Oogamy (oospore)
Conjugation (zygospore)
Bold, HC and Wynne, MJ. Introduction to the algae, Prentice-Hall, Inc.New Jersey.
Algal Algal life life cyclescycles
CyanobacteriaCyanobacteria
From: Margulis, L & Schwartz, K.V. 1998 Five Kingdoms. Freeman, NYStaley, J. T. et al 1989 Bergey’s manual of Systematic bacteriology. William & Wilkins, Baltimore
S external layer (slime)OM outer memebranePL peptidoglycan layerCM cytoplasmic membraneCW cell wallCY cytoplasmaE cell envelopeGV gas vesicle
N nucleoplasmic regionC carboxysomePP polyphosphate granuleCP cyanophycin granuleGG glycogen granulesTH thylakoidPB phycobilisome
CyanobacteriaCyanobacteria -- Form Form diversitydiversity
0.5 0.5 -- 6060 µmµm
PigmentsPigments
Cayanobacterial TaxonomyCayanobacterial Taxonomy: :
RippkaRippka et al. 1979et al. 1979
Group Group II
+
Gloeobacter
-
+
Gloeocapsa+
Gloeothece
+
-
Synechocystis-
Synechococcus
+
+
Chamaesiphon
+
ScheathScheathSlimeSlimeThylakoidsThylakoids
Binary fission in 2-3 planes
Binary fission in one plane
UnicellularUnicellularGloeothece PCC 6909
Merismopedia punctata
Chroococcus PCC 9340
Cyanothece PCC 7418
GroupGroup IIIIUnicellular, division in multiple planesUnicellular, division in multiple planes
Motile baeocytesMotile baeocytes,,PseudofilamentsPseudofilaments
Unmotile Unmotile baeocytesbaeocytes
Motile Motile baeocytesbaeocytes
PleurocapsaPleurocapsaXenococcusXenococcusStanieriaStanieria
Stanieria PCC 7301
Pleurocapsa
GroupGroup IIIIIIFilamentous, division in one plane
MotileMotile, , sheathsheath absent absent oror veryvery thinthin, , SpirulinaSpirulina
MotileMotile,, sheathsheath absentabsent or very thinor very thinOscillatoriaOscillatoria
Non Non motilemotile, , very thick sheathvery thick sheathLPP ALPP A
MotileMotile, , sheathsheath absent; absent; constrictionsconstrictions; polar gas ; polar gas vesiclesvesiclesPseudanabaenaPseudanabaena
MotileMotile and noand no--motilemotile, , withwith oror withoutwithout sheathsheathLPP BLPP B
Spirulina PCC 9445
Oscillatoria sp.
Lyngbya sp.
Phormidium sp.
Pseudanabaena PCC9716
GroupGroup IVIVFilamentous, withFilamentous, with heterocystsheterocysts and division in one and division in one
planeplaneHormo-gonia
Heterocysts and Akinets
Cell form Typical genera
Spherical or Spherical or ovaloval
AnabaenaHeterocystsHeterocystsintercalary or terminal, intercalary or terminal,
AkinetenAkineten changeablechangeable cylindricalcylindrical Nodularia
--
HeterocystsHeterocysts terminal, terminal, AkinetenAkineten next next to to heterocystsheterocysts
Isodiametric or Isodiametric or cylindricalcylindrical
Cylindrospermum
HeterocystsHeterocysts terminal, terminal, AkinetenAkineten several several in in the the rowrow
Spherical orSpherical orovaloval
Nostoc
HeterocystsHeterocystsintercalary intercalary
cylindricalcylindrical Scytonema
HeterocystsHeterocysts basalbasal cylindricalcylindrical Calothrix
++
GroupGroup VVFilamentous, with Filamentous, with heterocystsheterocysts, division in more than one , division in more than one
planeplane
Reproduction Hetero-cysts
Adult-stage Typical genera
Terminal or intercalary
Breakage of the trichome results in formation of Gloeocapsa-like aggregates, containing heterocysts, from which later hormogonia are created
ChlorogloeopsisChlorogloeopsis
Intercalary Trichoms with lateral branching from which later hormogonia are created
Fischerella Fischerella
Through breakage of the trichome, hormogonia or akinets
Stigonema
ProchloralesProchlorales((propro--primitiveprimitive, , chloroschloros--grgrüünn))
ProchlorococcusProchlorococcus
chlorophyll a und b, Phycobiliproteins
Prochloron (Lewin 1977)
Prochlorothrix (Burger-Wiersma et al. 1986)
Prochlorococcus (Chisholm et al.1992)
(5x104 - 2x105 Zellen ml-1)
PhylogenyPhylogenySequencing Sequencing of of several gene several gene fragments including: fragments including: 16S 16S rRNArRNA, , rpoC1rpoC1, , psbApsbA, , glnBglnB, , UreABCDEFGUreABCDEFG and and ITS approved the ITS approved the statement that statement that ProchlorococcusProchlorococcusemerges within the emerges within the ““classicalclassical””cyanobacteria cladecyanobacteria clade
No No phylogeneticphylogeneticuniformityuniformity in in ProchlorophytesProchlorophytes
Close phylogenetic relation with cyanobacteriaClose phylogenetic relation with cyanobacteria
Partensky et al. (1999)
Phylum Phylum ChlorophytaChlorophyta: : green algaegreen algae
Life Cycle of Chlamydomonas, a unicellular green algae
Sexual reproduction:
•fusion of identical cells (isogamy)
•fertilization of a large non-motile cell by a smaller motile one (oogamy).
Phylum Phylum ChlorophytaChlorophyta: green algae : green algae ("chlor" - green, "phyta" - plant).
•The most closely related to plants,
•Includes unicellular, colonial and multicellularforms.
•Inhabit aquatic (mostly freshwater) and damp terrestrial environments.
•Many of the simpler forms are symbionts, e.g. some lichens,
•Alternation between haploid (asexual) and diploid (sexual) multicellular generations.
Phylum Phylum BacilariophytaBacilariophyta: the diatoms: the diatoms(" a little stick plant") -
•Unicellular aquatic forms, some of the most abundant protistan plant organisms in the oceans
•shells of SiO2.
•Cells comprised of two separate valves (shells).
Diatomaceous earth—dead diatoms settle to seafloor, collected and used in abrasives
Plankton—abundant food source for marine organisms
Reproduction: vegetative and sexual (auxospore)
Diatoms are traditionally divided Diatoms are traditionally divided into two orders:into two orders:
Centric diatoms (Centrales), which are radially symmetric
Pennate diatoms (Pennales), which are bilaterally symmetric.
Phylum Phylum PhaeophytaPhaeophyta: brown algae: brown algae("("phaeophaeo" " -- brown, "brown, "phytaphyta" " -- plant).plant).
Multicellular, mostly marine
Underwater forests—habitats
Most contain the pigment fucoxanthin, responsible for the distinctive greenish-brown color
Kelp—food, habitats for aquatic organisms
Reproduce by means of flagellate spores
Of commercial importance to humans (Pectin, alginin)
Phylum Phylum RhodophytaRhodophyta: red algae : red algae ("("rhodrhod" " -- red, "red, "phytaphyta" " -- plant).plant).
Mostly multicellular,marine,
Most of the coralline algae, which secrete calcium carbonateand play a major role in building coral reefs,
Commercial importance : Agar, carrageen, sushi
Sexual reproduction: non-motile larger female and smaller male gametes
Phylum Phylum PyrrophytaPyrrophyta: the : the dinoflagellatesdinoflagellatesFlagellate protists with two dissimilar flagella(longitudinal and transverse), mostly in marine plankton
Most are unicellular forms
About half of all are photosynthetic
Some species, called zooxanthellae, are endosymbionts of marine animals and protozoa (coral reefs).
Colorless predators on other protozoa, and a few forms are parasitic (e.g. Oodinium, Pfisteria).
Some are bioluminescent
Red tide—population explosion of certain types of dinoflagellates. Kills large amounts of fish. Depletes water of oxygen and releases toxins into the water.
Reproduction: vegetative through fission or sexual