chytrid fungus testing in southeast oklahoma...

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a Elizabeth Marhanka University of Oklahoma Chytrid Fungus Testing in Southeast Oklahoma Amphibians HYPOTHESIS Batrachochytrium dendrobatidis (Bd) has been present in North America for at least 50 years, but has been poorly studied. Many studies have been recently done in the nearby states of Oklahoma with the results showing that the chytrid fungus was present in all of them. Once we expand this study to multiple counties of southeastern Oklahoma, I believe that an abundance of chytrid infected amphibians will be found. From March to May 2015, the Herpetology Department of the Sam Noble Museum completed five field sampling trips to Southeast Oklahoma to collect live amphibian specimens, in order to sample for the presence of the amphibian infectious disease, Batrachochytrium dendrobatidis. Animals were caught by hand, net, or seine in ponds and streams in Wildlife Management Areas (WMAs) in SE Oklahoma. They were then brought back to the Sam Noble Museum to swab their skin for chytrid; then the animals were euthanized via chlorotone, preserved in formalin, and then transferred to 70% Ethanol for long term storage. Using a PrepMan Ultra method to extract the DNA from the swabs, DNA was collected and then shipped to the Disease Testing Center at the University of South Dakota (Cheng et al 2011). The lab performed DNA analysis via quantitative PCR to estimate the abundance of the fungus found in each individual. INTRODUCTION DISCUSSION METHODS RESULTS REFERENCES Cheng TL, Rovito SM, Wake DB, Vreenburg VT (2011) Coincident mass extirpation of neotropical amphibians with the emergence of the infectious fungal pathogen Batrachochytrium dendrobatidis. National Academy of Science, 108, 9502–9507. Jancovich JK, Davidson EW, Parameswaran N, Mao J, Chinchar JG, Collins JP, Jacobs BL, Storfer A (2005) Evidence for Emergence of an Amphibian Iridoviral Disease Because of Human-enhanced Spread. Molecular Ecology, 14.1, 213–124. McFadden M. 2007 May 18. Amphibian Photos: Litoria spenceri, Spotted Tree Frog 2, Being chytrid swabbed [Internet]. Amphibian Ark; [2009 Oct 11, cited 2016 Jan 31] . Available from: https://aark.portal.isis.org/Amphibian%20photos/Forms/ DispForm.aspx?ID=124 St-Amour V, Lesbarrères D (2007) Genetic Evidence of Ranavirus in Toe Clips: An Alternative to Lethal Sampling Methods. Conserv Genet, 8.5, 1247– 250. Sievert G, Sievert L (2001) A Field Guide to Oklahoma's Amphibians and Reptiles. Oklahoma City, OK. Third. Oklahoma City (OK): Oklahoma Department of Wildlife Conservation. Amphibians; p. 15– 86. ACKNOWLEDGEMENTS Amphibian populations worldwide are undergoing a rapid decline due to several factors: climate change, habitat loss, pet trade, pollution, and emergent infectious diseases (St. Amour and Lesbarrères 2006). In particular, two pathogens, the Ranaviruses and the chytrid fungus Batrachochytrium dendrobatidis (Bd), are the main culprits for amphibian declines in the United States (Janovich et al 2005). The chytrid fungus causes loss of skin function and often death in infected amphibians (Cheng et al 2011). Oklahoma alone is home to 31 species of frogs and 23 species of salamanders (Sievert and Sievert 2011), all of which are susceptible to chytrid fungus. Therefore, there is a great need to sample for the disease, in order to understand the pattern of this pathogen’s presence and implement conservation efforts for the amphibians of Oklahoma. The importance behind understanding the abundance of this emergent infectious disease can help us understand the effect humans have on the spread of diseases and how to implement new techniques that slow the spread of emergent infectious diseases that affect both humans and other species. County Sample Size Bd+ individuals Bd+ prevalence (%) Atoka 43 24 55.8 Latimer 48 27 56.3 Le Flore 70 35 50.0 McCurtain 108 73 67.6 Pushmataha 49 35 71.4 Total 319 194 60.82 Family, Species Number of individuals Bd+ (Prevalence) Ambystomatidae 2 1 (100%) Ambystoma opacum 1 1 (100%) Bufonidae 5 1 (20%) Anaxyrus americanus 2 1 (50%) Anaxyrus woodhousii 2 0 (N/A) Anaxyrus sp. 1 0 (N/A) Hylidae 137 85 (60%) Acris blanchardi 71 57 (80%) Hyla cinerea 32 15 (47%) Hyla chrysoscelis/versicolor 21 8 (38%) Hyla versicolor 8 2 (25%) Pseudacris fouquettei 1 1 (100%) Pseudacris streckeri 2 2 (100%) Pseudacris crucifer 1 0 (N/A) Unidentified species 1 0 (N/A) Microhylidae 7 7 (100%) Gastrophryne carolenensis 7 7 (100%) Ranidae 112 61 (54%) Lithobates catesbeianus 59 39 (66%) Lithobates clamitans 22 7 (32%) Lithobates sphenocephalus 11 10 (91%) Lithobates sp. 20 5 (25%) Salamandridae 54 39 (72%) Notophthalmus viridescens 54 40 (72%) Figure 1: Geographic distribution of sites where Bd individuals were sampled in Southeast Oklahoma. Red dots indicate sites where Bd + individuals were detected with the qPCR. Yellow dots indicate sites where Bd+ and – individuals were found. Blue dots indicate sites where Bd- individuals were found. The grey shadowing indicates WMA areas. A higher percentage of Batrachochytrium dendrobatidis (Bd) positive individuals were found than originally expected. With an overall 60% of amphibians caught in Southeastern Oklahoma positive with the chytrid fungus, the spread of this emergent infectious disease is wider than originally thought. With the help of grants from the Oklahoma Department of Wildlife Conservation (ODWC) and Oklahoma City Zoo Conservation Action Now (CAN), sampling of other regions of Oklahoma are being made currently through the Siler lab at the Sam Noble Museum and will continue through the next three years. Also, citizen science kits are currently being made by the Herpetology Department of the Sam Noble Museum that will be sent to various Oklahoma schools. These kits allow teachers and students to capture, identify, and swab amphibians in local ponds and streams. These kits will then be sent back to the Sam Noble Museum where the swabs will be tested for the presence of chytrid fungus. The conservation of Oklahoma and the United States’ amphibians from these emergent infectious diseases will be greatly helped by these results and help us understand the importance of saving our wildlife now. (McFadden 2007) (Siler Lab 2015) (Siler Lab 2015) Figure 1

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Page 1: Chytrid Fungus Testing in Southeast Oklahoma Amphibianscuriosity2creativity.net/sites/default/files/Chytrid Research Poster... · 23 species of salamanders (Sievert and Sievert 2011),

a

ElizabethMarhankaUniversityofOklahoma

ChytridFungusTestinginSoutheastOklahomaAmphibians

HYPOTHESIS

Batrachochytrium dendrobatidis (Bd) has been present in North America for at least 50 years, but has been poorly studied. Many studies have been recently done in the nearby states of Oklahoma with the results showing that the chytrid fungus was present in all of them. Once we expand this study to multiple counties of southeastern Oklahoma, I believe that an abundance of chytrid infected amphibians will be found.

From March to May 2015, the Herpetology Department of the Sam Noble Museum completed five field sampling trips to Southeast Oklahoma to collect live amphibian specimens, in order to sample for the presence of the amphibian infectious disease, Batrachochytrium dendrobatidis. Animals were caught by hand, net, or seine in ponds and streams in Wildlife Management Areas (WMAs) in SE Oklahoma. They were then brought back to the Sam Noble Museum to swab their skin for chytrid; then the animals were euthanized via chlorotone, preserved in formalin, and then transferred to 70% Ethanol for long term storage. Using a PrepMan Ultra method to extract the DNA from the swabs, DNA was collected and then shipped to the Disease Testing Center at the University of South Dakota (Cheng et al 2011). The lab performed DNA analysis via quantitative PCR to estimate the abundance of the fungus found in each individual.

INTRODUCTION DISCUSSIONMETHODS

RESULTS

REFERENCES

Cheng TL, Rovito SM, Wake DB, Vreenburg VT (2011) Coincident mass extirpation of neotropical amphibians with the emergence of the infectious fungal pathogen Batrachochytrium dendrobatidis. National Academy of Science, 108, 9502–9507.

Jancovich JK, Davidson EW, Parameswaran N, Mao J, Chinchar JG, Collins JP, Jacobs BL, Storfer A (2005) Evidence for Emergence of an Amphibian Iridoviral Disease Because of Human-enhanced Spread. Molecular Ecology, 14.1, 213–124.

McFadden M. 2007 May 18. Amphibian Photos: Litoria spenceri, Spotted Tree Frog 2, Being chytrid swabbed [Internet]. Amphibian Ark; [2009 Oct 11, cited 2016 Jan 31] . Available from: https://aark.portal.isis.org/Amphibian%20photos/Forms/DispForm.aspx?ID=124

St-Amour V, Lesbarrères D (2007) Genetic Evidence of Ranavirus in Toe Clips: An Alternative to Lethal Sampling Methods. Conserv Genet, 8.5, 1247– 250.

Sievert G, Sievert L (2001) A Field Guide to Oklahoma's Amphibians and Reptiles. Oklahoma City, OK. Third. Oklahoma City (OK): Oklahoma Department of Wildlife Conservation. Amphibians; p. 15– 86.

ACKNOWLEDGEMENTS

Amphibian populations worldwide are undergoing a rapid decline due to several factors: climate change, habitat loss, pet trade, pollution, and emergent infectious diseases (St. Amour and Lesbarrères 2006). In particular, two pathogens, the Ranaviruses and the chytrid fungus Batrachochytrium dendrobatidis (Bd), are the main culprits for amphibian declines in the United States (Janovich et al 2005). The chytrid fungus causes loss of skin function and often death in infected amphibians (Cheng et al 2011). Oklahoma alone is home to 31 species of frogs and 23 species of salamanders (Sievert and Sievert 2011), all of which are susceptible to chytrid fungus. Therefore, there is a great need to sample for the disease, in order to understand the pattern of this pathogen’s presence and implement conservation efforts for the amphibians of Oklahoma. The importance behind understanding the abundance of this emergent infectious disease can help us understand the effect humans have on the spread of diseases and how to implement new techniques that slow the spread of emergent infectious diseases that affect both humans and other species.

County Sample Size Bd+ individuals Bd+ prevalence (%)

Atoka 43 24 55.8

Latimer 48 27 56.3

Le Flore 70 35 50.0

McCurtain 108 73 67.6

Pushmataha 49 35 71.4

Total 319 194 60.82

Family, Species Number of individuals Bd+ (Prevalence)

Ambystomatidae 2 1 (100%)Ambystoma opacum 1 1 (100%)Bufonidae 5 1 (20%)Anaxyrus americanus 2 1 (50%)Anaxyrus woodhousii 2 0 (N/A)Anaxyrus sp. 1 0 (N/A)Hylidae 137 85 (60%)Acris blanchardi 71 57 (80%)Hyla cinerea 32 15 (47%)Hyla chrysoscelis/versicolor 21 8 (38%)Hyla versicolor 8 2 (25%)Pseudacris fouquettei 1 1 (100%)Pseudacris streckeri 2 2 (100%)Pseudacris crucifer 1 0 (N/A)Unidentified species 1 0 (N/A)Microhylidae 7 7 (100%)Gastrophryne carolenensis 7 7 (100%)Ranidae 112 61 (54%)Lithobates catesbeianus 59 39 (66%)Lithobates clamitans 22 7 (32%)Lithobates sphenocephalus 11 10 (91%)Lithobates sp. 20 5 (25%)Salamandridae 54 39 (72%)Notophthalmus viridescens 54 40 (72%)

Figure 1: Geographic distribution of sites where Bd individuals were sampled in Southeast Oklahoma. Red dots indicate sites where Bd + individuals were detected with the qPCR. Yellow dots indicate sites where Bd+ and – individuals were found. Blue dots indicate sites where Bd- individuals were found. The grey shadowing indicates WMA areas.

A higher percentage of Batrachochytrium dendrobatidis (Bd) positive individuals were found than originally expected. With an overall 60% of amphibians caught in Southeastern Oklahoma positive with the chytrid fungus, the spread of this emergent infectious disease is wider than originally thought. With the help of grants from the Oklahoma Department of Wildlife Conservation (ODWC) and Oklahoma City Zoo Conservation Action Now (CAN), sampling of other regions of Oklahoma are being made currently through the Siler lab at the Sam Noble Museum and will continue through the next three years. Also, citizen science kits are currently being made by the Herpetology Department of the Sam Noble Museum that will be sent to various Oklahoma schools. These kits allow teachers and students to capture, identify, and swab amphibians in local ponds and streams. These kits will then be sent back to the Sam Noble Museum where the swabs will be tested for the presence of chytrid fungus. The conservation of Oklahoma and the United States’ amphibians from these emergent infectious diseases will be greatly helped by these results and help us understand the importance of saving our wildlife now.

(McFadden 2007) (Siler Lab 2015) (Siler Lab 2015)

Figure 1