b12 synporter another brick in the wall - igem 2016...

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B 12 S YNPORTER ANOTHER BRICK IN THE W ALL iGEM Team Göttingen 2016 Department for Genomic and Applied Microbiology, University of Göttingen SPONSORS iGEM GÖTTINGEN ONLINE Homepage igem2016.uni-goettingen.de E-mail [email protected] Facebook iGEM Team Goettingen OUR TEAM Gregor Hoffmann, Tobias Schilling, Tobias Krammer, Alexander Bräuer Miriam Schüler, Ines Friedrich, Marieke Enders, Nora Eulig, Larissa Krüger Supervisors: Prof. Dr. Rolf Daniel, Dr. Anja Poehlein, Dr. Andrea Thürmer, Genis Andres Castillo Villamizar BACKGROUND Since the chemical production of vitamin B 12 is very elaborate, production is facilitated by genetically engineered microorganisms. However, the produced Vitamin B 12 is not exported out of the organism and must be harvested by cell lysis. This prevents a cost efficient production. To date, a natural cellular Vitamin B 12 exporter is unknown. Vitamin B 12 (Fig. 1) is an essential nutrient for almost all organisms. However, its biosynthesis is confined to micro- organisms. Humans can mainly take it up via animal products or food supplements. Figure 1: Structure of Vitamin B 12 (Hydroxycobalamin) AIM We intend to design, construct and introduce a synthetic Vitamin B 12 exporter (“Synporter”, Fig. 2) into a production organism. Thereby, we aim for higher yields in the industrial Vitamin B 12 production without a required cell lysis. ABOUT iGEM The annual iGEM (international Genetically Engineered Machines) competition is the largest in the field of synthetic biology. It is operated by the iGEM Foundation that was established by the Massachusetts Institute of Technology. The participants are interdisciplinary student teams from all over the world who have to prove themselves in organizing and executing the entire project as well as finding financial support. COURSE OF OUR PROJECT The B 12 Synporter consists of a signal for a twin arginine translocation (Tat)-mediated export that is linked to a B 12 -binding protein. Three different constructs are being tested (Tab. 1). Table 1: Buildup of the B 12 Synporter constructs. Sequence Original Peptide ( Species): Function Amino acids Export signal T orA ( E. coli ) 39 Linker 5 aminoacids post TorA export signal 5 B 12 binding protein α-subunit MutB (P. shermanii) : Methylmalonyl-CoA-Mutase; B 12 co-factor 727 BtuF (E. coli K12) :B 12 import 265 small subunit GlmS (C. cochlearium) : Glutamate mutase; B 12 co-factor 136 What has been done already… After checking their identity, the production strains S. typhimurium TA100, S. blattae and R. planticola were cultivated and their natural antibiotic resistances were determined. The vector pBAD202 was chosen for expression and the strains were made electrocompetent. The three different constructs for the B 12 Synporter were designed and synthesized. (Fig. 3) Figure 2: Model of the „Synporter“ bound to Vitamin B 12 inside a Gram-negative production organism. Figure 3: Course of our project. Check marks ( ) indicate completed tasks. How we will proceed… The constructs will be cloned into the vector (Fig. 4) and introduced into E. coli via electroporation to check for expression. This will be followed by the transformation of the production strains. The success of the Vitamin B 12 export will be tested using a microbiological assay as well as spectrophotometry. Finally, we will present our results at the Giant Jamborée in Boston. Figure 4: Model for a B 12 Synporter construct inserted into the pBAD202 plasmid vector. The vector includes the origin of replication (ori), a kanamycin resistance gene (kanR), the promoter of an L-arabinose operon (araBAD promotor) and the L-arabinose regulatory gene (araC).

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Page 1: B12 SYNPORTER ANOTHER BRICK IN THE WALL - iGEM 2016 …igem2016.uni-goettingen.de/wp-content/uploads/2016/07/Poster_iGEM_A0.pdf · B 12 SYNPORTER ANOTHER BRICK IN THE WALL iGEM Team

B12 SYNPORTERANOTHER BRICK IN THE WALL

iGEM TeamGöttingen 2016DepartmentforGenomicandAppliedMicrobiology,UniversityofGöttingen

SPONSORS iGEM GÖTTINGEN ONLINE

Homepageigem2016.uni-goettingen.de

[email protected]

FacebookiGEM TeamGoettingen

OUR TEAM

GregorHoffmann,TobiasSchilling,TobiasKrammer,AlexanderBräuerMiriamSchüler,InesFriedrich,MariekeEnders,NoraEulig,LarissaKrüger

Supervisors:Prof.Dr.RolfDaniel,Dr.AnjaPoehlein,Dr.AndreaThürmer,Genis AndresCastilloVillamizar

BACKGROUND

Since the chemical production of vitamin B12 isvery elaborate, production is facilitated bygenetically engineered microorganisms.However, the produced Vitamin B12 is notexported out of the organism and must beharvested by cell lysis. This prevents a costefficient production. To date, a natural cellularVitamin B12 exporter is unknown.

Vitamin B12 (Fig. 1) is anessential nutrient foralmost all organisms.However, its biosynthesisis confined to micro-organisms. Humans canmainly take it up viaanimal products or foodsupplements.

Figure 1:Structure ofVitaminB12(Hydroxycobalamin)

AIM

We intend to design, construct and introduce asynthetic Vitamin B12 exporter (“Synporter”,Fig. 2) into a production organism. Thereby, weaim for higher yields in the industrial VitaminB12 production without a required cell lysis.

ABOUT iGEM

TheannualiGEM (internationalGeneticallyEngineeredMachines)competitionisthelargestinthefieldofsyntheticbiology.ItisoperatedbytheiGEM FoundationthatwasestablishedbytheMassachusettsInstituteofTechnology.Theparticipantsareinterdisciplinarystudentteamsfromallovertheworldwhohavetoprovethemselvesinorganizingandexecutingtheentireprojectaswellasfindingfinancialsupport.

COURSE OF OUR PROJECTTheB12 Synporter consists of asignal for atwin arginine translocation (Tat)-mediatedexport that is linked to aB12-bindingprotein.Three differentconstructs are being tested(Tab.1).Table 1:Buildup of the B12 Synporter constructs.

Sequence OriginalPeptide(Species): Function Amino acids

Export signal TorA (E.coli) 39Linker 5aminoacids post TorA export signal 5

B12 binding proteinα-subunit MutB (P.shermanii): Methylmalonyl-CoA-Mutase;B12 co-factor 727BtuF (E.coliK12):B12import 265small subunit GlmS (C.cochlearium): Glutamatemutase; B12 co-factor 136

What has been done already…

After checking their identity, theproduction strains S. typhimurium TA100,S. blattae and R. planticola were cultivatedand their natural antibiotic resistanceswere determined. The vector pBAD202was chosen for expression and the strainswere made electrocompetent. The threedifferent constructs for the B12 Synporterwere designed and synthesized. (Fig. 3)

Figure 2: Model of the „Synporter“ bound to Vitamin B12 inside aGram-negative production organism.

Figure 3: Course of our project. Checkmarks ( ) indicate completed tasks.

How we will proceed…

The constructs will be cloned into thevector (Fig. 4) and introduced into E. colivia electroporation to check forexpression. This will be followed by thetransformation of the production strains.The success of the Vitamin B12 export willbe tested using a microbiological assay aswell as spectrophotometry. Finally, we willpresent our results at the Giant Jamboréein Boston.

Figure 4: Model for a B12 Synporter constructinserted into the pBAD202 plasmid vector.The vector includes the origin of replication (ori), akanamycin resistance gene (kanR), the promoter ofan L-arabinose operon (araBAD promotor) and theL-arabinose regulatory gene (araC).