4,000 bp 4,000 bp 20,000 bp 20,000 bp 40,000 bp · 2014-08-15 · bunyaviridae caliciviridae...
TRANSCRIPT
0
1000
2000
3000
0 50000 100000 150000 200000 250000genlens$len
count
Figure S1 Genome length histogram. The genome bin cutoff sizes (red lines) shown on ezVIR plots (data point circumferences) were chosen to separate the three major groups of virus genome lengths. These default values of 4,000 bp 20,000 bp and 40,000 bp can be changed by the user to match other custom databases if needed.
4,000 bp
20,000 bp
40,000 bp
Genome length (bp)
0
500
1000
1500
2000
0 5000 10000 15000 20000genlens$len
count
4,000 bp 20,000 bp
enlarged region: 0 – 20,000 bp
Herpes-‐2
Herpes-‐1
Herpes-‐1 coverage footprint
Herpes-‐2 coverage footprint
sliding window of [50 bp]
genome coverage (area under the curve)
genome
Figure S2 Sliding window calculation for maximum depth. The sliding window allows ezVIR to better highlight subtle differences in virus genome coverage (for the Y-axis values on ezVIR plots). Here, while the read coverage (red and blue curves) for two genomes have the same maximum ‘depth’ of coverage, Herpes-1 has a larger footprint and higher read count within the sliding window. The value used for the Y-axis in ezVIR plots is the maximum of the rolling mean in this 50 bp window. In other words, a 50 bp window is rolled along the genome. For each 50 bp window, the average number of reads (coverage) is computed. The maximum average coverage value that is found is used for the Y-axis value for that genome. This measure performs better than ‘average depth’ or ‘overall maximum depth’ calculations, where (for Herpes-1) a similar depth value would have to be divided by a relatively larger denominator.
dept
h of
cov
erag
e
maximum depth of coverage
020
4060
80
max
cov
erag
e de
pth
[50
bp w
indo
w]
●
●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Herpes_simplex_2
Herpes_simplex_1
Cytomegalovirus
JC_polyomavirus
specimen−01PHASE−1 | viruses with > 0 % genome coverage
specimen−01_cut−0_p1−plot.pdf | 2014−06−25 14:53
% genome coverage
020
000
4000
060
000
8000
0
max
cov
erag
e de
pth
[50
bp w
indo
w]
●
●
●
●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
BK_polyomavirus
Herpes_simplex_1Cytomegalovirus
JC_polyomavirus
TT_virus
specimen−02PHASE−1 | viruses with > 0 % genome coverage
specimen−02_cut−0_p1−plot.pdf | 2014−06−25 14:56
% genome coverage
02
46
810
max
cov
erag
e de
pth
[50
bp w
indo
w]
●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Herpes_simplex_1Herpesvirus_3Cytomegalovirus
Herpesvirus_6AHerpesvirus_6B
Herpesvirus_7
specimen−03PHASE−1 | viruses with > 0 % genome coverage
specimen−03_cut−0_p1−plot.pdf | 2014−06−25 14:57
% genome coverage
050
100
150
max
cov
erag
e de
pth
[50
bp w
indo
w]
●
●
●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Herpes_simplex_1Cytomegalovirus
Herpesvirus_6A
Herpesvirus_6BHerpesvirus_7
Papillomavirus
TT_virus
specimen−04PHASE−1 | viruses with > 0 % genome coverage
specimen−04_cut−0_p1−plot.pdf | 2014−06−25 14:58
% genome coverage
010
2030
4050
6070
max
cov
erag
e de
pth
[50
bp w
indo
w]
●
●
●
●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
BK_polyomavirus
Herpes_simplex_1Cytomegalovirus
Herpesvirus_6A
Herpesvirus_6BHerpesvirus_7
Micro_TT_virus
TT_virus
specimen−05PHASE−1 | viruses with > 0 % genome coverage
specimen−05_cut−0_p1−plot.pdf | 2014−06−25 14:59
% genome coverage
0e+
002e
+04
4e+
046e
+04
8e+
041e
+05
max
cov
erag
e de
pth
[50
bp w
indo
w]
●
●●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Epstein−Barr_virusHerpesvirus_6AHerpesvirus_6B
Micro_TT_virus
TT_virus
specimen−06PHASE−1 | viruses with > 0 % genome coverage
specimen−06_cut−0_p1−plot.pdf | 2014−06−25 15:00
% genome coverage
020
0040
0060
0080
0010
000
max
cov
erag
e de
pth
[50
bp w
indo
w]
●
●●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
CytomegalovirusHerpes_simplex_1
Herpesvirus_6AHerpesvirus_6B
Herpesvirus_7
Micro_TT_virus
TT_virus
specimen−07PHASE−1 | viruses with > 0 % genome coverage
specimen−07_cut−0_p1−plot.pdf | 2014−06−25 15:01
% genome coverage
010
2030
4050
max
cov
erag
e de
pth
[50
bp w
indo
w]
●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Herpes_simplex_2
Herpes_simplex_1
Cytomegalovirus
specimen−08PHASE−1 | viruses with > 0 % genome coverage
specimen−08_cut−0_p1−plot.pdf | 2014−06−25 15:20
% genome coverage
010
0020
0030
0040
0050
00
max
cov
erag
e de
pth
[50
bp w
indo
w]
●●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Parvovirus_B19
Herpes_simplex_1Cytomegalovirus
Herpesvirus_6AHerpesvirus_6B
Herpesvirus_7
specimen−09PHASE−1 | viruses with > 0 % genome coverage
specimen−09_cut−0_p1−plot.pdf | 2014−06−25 15:20
% genome coverage
05
1015
2025
30
max
cov
erag
e de
pth
[50
bp w
indo
w]
●
●●
●●
●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Coxsackievirus
EchovirusEnterovirus
Herpes_simplex_1
RhinovirusMerkel_cell_polyomavirus
specimen−10PHASE−1 | viruses with > 0 % genome coverage
specimen−10_cut−0_p1−plot.pdf | 2014−06−25 15:18
% genome coverage
020
040
060
080
010
00
max
cov
erag
e de
pth
[50
bp w
indo
w]
● ●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Rhinovirus
specimen−11PHASE−1 | viruses with > 0 % genome coverage
specimen−11_cut−0_p1−plot.pdf | 2014−06−25 15:19
% genome coverage
050
100
150
200
max
cov
erag
e de
pth
[50
bp w
indo
w]
●
●
●
●
●
●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Coxsackievirus−B
Echovirus
Enterovirus
Epstein−Barr_virus
Coxsackievirus
Herpes_simplex_1
CytomegalovirusMeasles
specimen−12PHASE−1 | viruses with > 0 % genome coverage
specimen−12_cut−0_p1−plot.pdf | 2014−06−25 15:02
% genome coverage
050
0010
000
1500
020
000
2500
0
max
cov
erag
e de
pth
[50
bp w
indo
w]
●
●●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Herpes_simplex_1Cytomegalovirus
Rhinovirus
Measles
specimen−13PHASE−1 | viruses with > 0 % genome coverage
specimen−13_cut−0_p1−plot.pdf | 2014−06−25 15:03
% genome coverage
050
000
1000
0015
0000
max
cov
erag
e de
pth
[50
bp w
indo
w]
●●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Herpes_simplex_1Cytomegalovirus
Metapneumovirus
specimen−14PHASE−1 | viruses with > 0 % genome coverage
specimen−14_cut−0_p1−plot.pdf | 2014−06−25 15:04
% genome coverage
050
100
150
200
250
max
cov
erag
e de
pth
[50
bp w
indo
w]
●
●
●
●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Herpes_simplex_1Metapneumovirus
Parainfluenza_3
Merkel_cell_polyomavirus
specimen−15PHASE−1 | viruses with > 0 % genome coverage
specimen−15_cut−0_p1−plot.pdf | 2014−06−25 15:05
% genome coverage
050
000
1000
0015
0000
2000
00
max
cov
erag
e de
pth
[50
bp w
indo
w]
●●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Herpes_simplex_1Cytomegalovirus
Rhinovirus
specimen−16PHASE−1 | viruses with > 0 % genome coverage
specimen−16_cut−0_p1−plot.pdf | 2014−06−25 15:07
% genome coverage
010
2030
4050
6070
max
cov
erag
e de
pth
[50
bp w
indo
w]
●
●
●
●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Epstein−Barr_virus
Hepatitis_G
Herpes_simplex_1Cytomegalovirus
Rhinovirus
Influenza_A
specimen−17PHASE−1 | viruses with > 0 % genome coverage
specimen−17_cut−0_p1−plot.pdf | 2014−06−25 15:10
% genome coverage
020
4060
8010
012
0
max
cov
erag
e de
pth
[50
bp w
indo
w]
●
●
●
●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Epstein−Barr_virus
HIV−1
Herpes_simplex_1Cytomegalovirus
Lymphadenopathy_virus
T_Cell_Lymphotropic_Virus
specimen−18PHASE−1 | viruses with > 0 % genome coverage
specimen−18_cut−0_p1−plot.pdf | 2014−06−25 15:15
% genome coverage
050
100
150
200
250
max
cov
erag
e de
pth
[50
bp w
indo
w]
● ●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Epstein−Barr_virus
Hepatitis_C
specimen−19PHASE−1 | viruses with > 0 % genome coverage
specimen−19_cut−0_p1−plot.pdf | 2014−06−25 15:16
% genome coverage
020
040
060
080
010
00
max
cov
erag
e de
pth
[50
bp w
indo
w]
●●
●
●
●
●
●
●●
Total covered length (bp):
< 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Parainfluenza_1
Parainfluenza_3Parainfluenza_4
Parechovirus
Rhinovirus
Measles
specimen−20PHASE−1 | viruses with > 0 % genome coverage
specimen−20_cut−0_p1−plot.pdf | 2014−06−25 15:21
% genome coverage
010
2030
4050
6070
max
cov
erag
e de
pth
[50
bp w
indo
w]
!
!
!
!
!
!
Total covered length (bp): < 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Epstein−Barr_virus
Hepatitis_G
Herpes_simplex_1Cytomegalovirus
Rhinovirus
Influenza_A
specimen−17PHASE−1 | viruses with > 0 % genome coverage
specimen−17_cut−0_p1−plot.pdf | 2014−03−04 11:54
% genome coverage
010
2030
4050
6070
max
cov
erag
e de
pth
[50
bp w
indo
w]
!
!
!
!
!
!
Total covered length (bp): < 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Epstein−Barr_virus
Hepatitis_G
Herpes_simplex_1Cytomegalovirus
Rhinovirus
Influenza_A
specimen−17PHASE−1 | viruses with > 0 % genome coverage
specimen−17_cut−0_p1−plot.pdf | 2014−06−25 15:10
% genome coverage
050
100
150
200
max
cov
erag
e de
pth
[50
bp w
indo
w]
!
!
!
!
!
!
!
!
Total covered length (bp): < 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Coxsackievirus−B
Echovirus
Enterovirus
Epstein−Barr_virus
CoxsackievirusHerpes_simplex_1
Cytomegalovirus Measles
specimen−12PHASE−1 | viruses with > 0 % genome coverage
specimen−12_cut−0_p1−plot.pdf | 2014−03−04 11:47
% genome coverage
050
100
150
200
max
cov
erag
e de
pth
[50
bp w
indo
w]
!
!
!
!
!
!
!
!
Total covered length (bp): < 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Coxsackievirus−B
Echovirus
Enterovirus
Epstein−Barr_virus
Coxsackievirus
Herpes_simplex_1
CytomegalovirusMeasles
specimen−12PHASE−1 | viruses with > 0 % genome coverage
specimen−12_cut−0_p1−plot.pdf | 2014−06−25 15:02
% genome coverage
05
1015
2025
30
max
cov
erag
e de
pth
[50
bp w
indo
w]
!
!!
!!
!
!
!
Total covered length (bp): < 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Coxsackievirus
EchovirusEnterovirus
Herpes_simplex_1
RhinovirusMerkel_cell_polyomavirus
specimen−10PHASE−1 | viruses with > 0 % genome coverage
specimen−10_cut−0_p1−plot.pdf | 2014−03−04 12:02
% genome coverage
05
1015
2025
30
max
cov
erag
e de
pth
[50
bp w
indo
w]
!
!!
!!
!
!
!
Total covered length (bp): < 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Coxsackievirus
EchovirusEnterovirus
Herpes_simplex_1
RhinovirusMerkel_cell_polyomavirus
specimen−10PHASE−1 | viruses with > 0 % genome coverage
specimen−10_cut−0_p1−plot.pdf | 2014−06−25 15:18
% genome coverage
65
6
197166
80
100
101
102
103
104
105
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20specimen ID
log
(max
cov
erag
e de
pth
[50
bp w
indo
w])
mappping to: Human rhinovirus 66 strain ATCC VR−1176− complete genomegenome ID: gi|217316426|gb|FJ445148.1| | May 02, 2014 at 02:12 PM
020
4060
80
max
cov
erag
e de
pth
[50
bp w
indo
w]
!
!
!
!
Total covered length (bp): < 4,000 > 4,000
> 20,000
> 40,000
AdenoviridaeArenaviridaeAstroviridaeBunyaviridaeCaliciviridaeCoronaviridaeFlaviviridaeHepadnaviridaeHepeviridaeHerpesviridaeOrthomyxoviridaePapillomaviridaeParamyxoviridaeParvoviridaePicornaviridaePolyomaviridaeReoviridaeRetroviridaeRhabdoviridaeTogaviridaeOtherpadding
0 25 50 75 100
Herpes_simplex_2
Herpes_simplex_1
Cytomegalovirus
JC_polyomavirus
specimen−01PHASE−1 | viruses with > 0 % genome coverage
specimen−01_cut−0_p1−plot.pdf | 2014−03−04 11:37
% genome coverage
Measles in specimen-12 C
JC polyomavirus in specimen-01 A
HRV in specimen-10 B
HRV in specimen-17 D
specimen shown positive for HRV *
*
2
79614
100
101
102
103
104
105
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20specimen ID
log
(max
cov
erag
e de
pth
[50
bp w
indo
w])
mappping to: JC polyomavirus strain JCVCPN1− complete genomegenome ID: gi|383932066|gb|JQ823124.1| | May 02, 2014 at 02:58 PM
2
1094
317
100
100.5
101
101.5
102
102.5
103
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20specimen ID
log
(max
cov
erag
e de
pth
[50
bp w
indo
w])
mappping to: Human rhinovirus 73− complete genomegenome ID: gi|95102499|gb|DQ473492.1| | May 02, 2014 at 03:03 PM
8
24159
199
100
101
102
103
104
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20specimen ID
log
(max
cov
erag
e de
pth
[50
bp w
indo
w])
mappping to: Measles virus strain MVi−New Jersey.USA−45.05− complete genomegenome ID: gi|347990581|gb|JN635408.1| | May 02, 2014 at 03:02 PM
specimen shown positive for Measles *
*
specimen shown positive for HRV *
*